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LOCUS XM_017143103 4155 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017143103 VERSION XM_017143103.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143103.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4155 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4155 /gene="Dsp1" /note="Dorsal switch protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058404" CDS 699..1865 /gene="Dsp1" /codon_start=1 /product="high mobility group protein DSP1 isoform X3" /protein_id="XP_016998592.1" /db_xref="GeneID:108058404" /translation="MEHFHQIQQLAAQQQQQVQQQQLQQHQVQVVQQNQQQAHQNSSN TTAGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVPG SQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQQQQNVINSA ASPMIRGGKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMV DKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWF CNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYK TSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQQHQLEEQHDDDDGDGDDDENQ" misc_feature 1215..1421 /gene="Dsp1" /note="first high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family; Region: HMG-box_HMGB_rpt1; cd21978" /db_xref="CDD:438794" misc_feature order(1215..1223,1230..1232,1239..1244,1248..1256, 1266..1268,1275..1277,1296..1301,1305..1310,1314..1322, 1326..1331,1341..1343) /gene="Dsp1" /note="p53 binding site [polypeptide binding]; other site" /db_xref="CDD:438794" misc_feature order(1215..1217,1221..1226,1230..1244,1251..1256, 1299..1301,1305..1310,1314..1322,1329..1331,1338..1340) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438794" misc_feature 1455..1697 /gene="Dsp1" /note="high mobility group (HMG)-box domain superfamily; Region: HMG-box_SF; cl00082" /db_xref="CDD:469606" misc_feature order(1500..1502,1506..1520,1527..1532,1551..1553, 1587..1592,1599..1601,1608..1613,1632..1634,1644..1646, 1653..1655,1665..1667,1674..1676) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438792" polyA_site 4155 /gene="Dsp1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acagtaagca gagacggcaa ttcaattcat ttcattcgtt gttggtactc tctgtgtgtg 61 ttttcaataa agcgagcggc gcgcgaacgg gccatatatt ctgtattctg ttctgtattt 121 tccgcatcgc attcgcattg atacgacacc gtactgtgtg ctgttgtgta tagtgtatgt 181 accacaccaa caaaacacag gcgatacgac acgatacaaa gcgtatgcag cgctgtttgt 241 ttatttttta caagttaaaa caaacgacaa aacaaatcag ccaagccgcc cgcgtttcgc 301 gctgcaaata ataatagaaa aaacaagcga aaaacaaaaa cgtgtgcatt gtgaatttga 361 aattttcgaa ttttgagttt cgaatttttg gcttgtatcg tcgtacacca ccgtacatac 421 atacatacat tttcgtattc gtgtgcaata atcaatacaa tacaacgtac aacaaactgc 481 gtagaacagt attaaaaaaa aagaaacgga aaaaagacaa aactggctca agacttgcgt 541 tcgtgtgcgt tttacataca catacaacat agatttctgt gcaagaagaa agaaagttac 601 taatttgtgg actaaaagtg aaggaaatag accagaggac taactataaa gccaatccac 661 actgaaaaca atcggactcg atccgatacc gcacagttat ggaacacttt catcaaatac 721 agcaactggc tgctcagcaa caacaacaag tacaacagca acagttgcaa caacaccagg 781 tgcaggtcgt gcagcagaat cagcagcagg cgcatcagaa tagctccaat acgacagccg 841 gcgtgggcac ccaacagctg ttcacataca aaatggccag cagttttccg aatccggcca 901 caacgatggc ccaagtggtg gccacatcga atgccgccgg caccacgggc tatgactatc 961 gcctaaatat ggcacaagcg gccgcagcag cagccgttcc agggtcccaa tggtggtact 1021 cggccgccaa tcagggccag gtcgatgcca atacagcggc gcaactgcag caccagcagc 1081 agcaacagca gcagcagcag caacagcagc agcaacagca ccagcagcaa caacagatgc 1141 aacagcagca acagcaacag aatgtcatca attcggcagc gagcccaatg atcagaggtg 1201 gcaaggccga tgccaagccc agaggccgaa tgaccgccta cgcatacttt gtacaaactt 1261 gcagagagga gcacaaaaag aagcatcccg atgagacggt gatattcgcc gagttctcac 1321 gaaagtgtgc cgagaggtgg aagacaatgg tcgacaagga gaagaagcgt ttccacgaaa 1381 tggccgagaa ggacaagcag cgatacgagg cggaaatgca gaactatgtg ccgcccaagg 1441 gagcggttgt gggacgcggc aagaagagga aacaaatcaa ggatcccaat gctccaaaac 1501 gttcattgtc tgcgttcttc tggttctgca atgacgaaag aaataaggtg aaggcactca 1561 atcccgagtt cggagtgggc gacattgcca aggagctggg acgaaagtgg tcggatgtgg 1621 atcccgaggt caagcagaag tacgagtcga tggcagaacg ggacaaggct cgatatgaac 1681 gcgagatgac cgagtacaag acgagcggga aaatagccat gtccgcaccg tcgatgcagg 1741 cgtcgatgca ggcgcaggca cagaaagccg cgttacttgc cgccgctgcc cagcagcagc 1801 aacaccagct ggaagagcag cacgacgacg acgacggcga tggagatgat gacgagaacc 1861 aataggttta gcagtaaata ctcttcacta tttatacaca cgcggtcgtt gtcacgagcg 1921 aaggagcgaa ggagaaatga acatgataac gttggtcgat ctattatcag gttggcgcca 1981 atgtgtgttg aatatatatt tatatatata agggtgtttt ctttttagag gttccgtttt 2041 ccgctagcgc taaaactatc acaatttgtt cagtagttca tctggcaatg ctgtataatc 2101 aattataaaa tataccaatt ataaattttt tttcaaaagc agtcgtgtga atctcgaatg 2161 gactttatta aacttactcc cattaaaaaa acaaagaacg gtgttagtgc ctctttcaaa 2221 atgatttttc aaccagccaa aagtccagcc aaaaatccaa ctggcacaga aatctcttga 2281 actttcaaag taggttttca aataaaaaca ttgttcctag tgtatttcga aaaaacaaca 2341 cgaaatctca agagattctg tgaaatttgt ggatttctct taggcaaggg caaaatctct 2401 acagatttct gtgattgaaa aaccaaagca aagcacaaat tgtttttttt ttacctttct 2461 taattgtgaa aattttcgat ggttagcggg taatggaacc tctaaaatac acctattata 2521 tatatgtaaa tgcatatata taaataatat ataatttttt ttttttaaca taagtaatca 2581 aatttccatg aattatgaag ataaatcaca aagaaacctt ttataagttc tatgttaaga 2641 tgaatacgat taagtatggt tagattaaaa gtgacactca tctgtctgca aaccttattt 2701 gtgcgcttca gtgctaagtt tctcttctcc taaagtaata agaagaatta ttttataaat 2761 tgaagataaa gagaaagaag aaattcatca ttatgtcatt cgttcgttct cagcaactat 2821 gaagaaggtt accactacat ttataaatat tggtacatat ttcccattta ttaaagttag 2881 attcaccata atgaaactac aattaatgcg ttcgagttta tgtatgtccc ccagcaagcg 2941 aaaagaaagc gaaacaaact caatcaaacg tgataatgtg aaatacttaa ctcagtggcg 3001 ggtgatatct cgatctatgt ttattttttg actctctaaa acacaaatat ttaaaaacat 3061 ttttaaaaaa ttcatttcat atttgaatta cttcatttac cagttcagtt tgcgattctt 3121 gaatttagag atcctcggag agatttttgg gtttgtgttc atttgtaaat atatacatca 3181 actataatat agccaccatc aagagatttg gaaactagat cttaggttgt tcaacgtttt 3241 gagaagggag aaaggagggg aaaggaaaaa cgatatcgga cattgcaaca attgttgact 3301 tggccatgta catactattt gaagtattat ttagatgaga ctacgtagaa attaacgaga 3361 atcgagagca aataaaaaat acaagcctaa tatctaatat tctaatatag agtatagagc 3421 gtagatttca gcgggactgc aaagtaatgt aaaaattgcg tagtaagttt gaagggcgaa 3481 gtggaaacta gtttttacac gtcggtcttg agaaccaaac caaaccccaa tgttccaggc 3541 acacagaaga agtgtttatg cagatataaa gggagacgtt cctccggctc ttgttttata 3601 ttgtattatt atcaattgtc aatcggttgg atggatgttt ctctttatat cgcatgtata 3661 agctaagtag tggttagata ttataacgtg ataagagagg agctgaaact atgtctaagg 3721 acgctgtacc cctaacttcg ctctccccac gttatgagtg cgcgacgata tgtatatgta 3781 tctgtatatc tatatctatt tttttagcat catttttgat agagaataac tcgccaccga 3841 gattatattc attaaagtgt ttaggttaaa cctttaaatc ctaattttcc aatcgccaca 3901 cataataaat tactatgaaa attccagttc ccctgtgcgc tttgttataa gaactaaact 3961 aaaactaaac tattataaaa taaactttta gaaatgagat tctttttttt accatggaat 4021 ggaatgatgt gatgtgtgtg ttcttcaaat ccatttgtct tttctattat aatttgaatg 4081 attaatggct cttggtacat acatattaga tgacaaactt ttatgttaca aataataaaa 4141 atccctataa acagc