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LOCUS XM_017143102 4156 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017143102 VERSION XM_017143102.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143102.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4156 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4156 /gene="Dsp1" /note="Dorsal switch protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058404" CDS 697..1866 /gene="Dsp1" /codon_start=1 /product="high mobility group protein DSP1 isoform X2" /protein_id="XP_016998591.1" /db_xref="GeneID:108058404" /translation="MEHFHQIQQQLAAQQQQQVQQQQLQQHQVQVVQQNQQQAHQNSS NTTAGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVP GSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQQQQNVINS AASPMIRGGKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTM VDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFW FCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEY KTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQQHQLEEQHDDDDGDGDDDENQ" misc_feature 1216..1422 /gene="Dsp1" /note="first high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family; Region: HMG-box_HMGB_rpt1; cd21978" /db_xref="CDD:438794" misc_feature order(1216..1224,1231..1233,1240..1245,1249..1257, 1267..1269,1276..1278,1297..1302,1306..1311,1315..1323, 1327..1332,1342..1344) /gene="Dsp1" /note="p53 binding site [polypeptide binding]; other site" /db_xref="CDD:438794" misc_feature order(1216..1218,1222..1227,1231..1245,1252..1257, 1300..1302,1306..1311,1315..1323,1330..1332,1339..1341) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438794" misc_feature 1456..1698 /gene="Dsp1" /note="high mobility group (HMG)-box domain superfamily; Region: HMG-box_SF; cl00082" /db_xref="CDD:469606" misc_feature order(1501..1503,1507..1521,1528..1533,1552..1554, 1588..1593,1600..1602,1609..1614,1633..1635,1645..1647, 1654..1656,1666..1668,1675..1677) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438792" polyA_site 4156 /gene="Dsp1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtaagcaga gacggcaatt caattcattt cattcgttgt tggtactctc tgtgtgtgtt 61 ttcaataaag cgagcggcgc gcgaacgggc catatattct gtattctgtt ctgtattttc 121 cgcatcgcat tcgcattgat acgacaccgt actgtgtgct gttgtgtata gtgtatgtac 181 cacaccaaca aaacacaggc gatacgacac gatacaaagc gtatgcagcg ctgtttgttt 241 attttttaca agttaaaaca aacgacaaaa caaatcagcc aagccgcccg cgtttcgcgc 301 tgcaaataat aatagaaaaa acaagcgaaa aacaaaaacg tgtgcattgt gaatttgaaa 361 ttttcgaatt ttgagtttcg aatttttggc ttgtatcgtc gtacaccacc gtacatacat 421 acatacattt tcgtattcgt gtgcaataat caatacaata caacgtacaa caaactgcgt 481 agaacagtat taaaaaaaaa gaaacggaaa aaagacaaaa ctggctcaag acttgcgttc 541 gtgtgcgttt tacatacaca tacaacatag atttctgtgc aagaagaaag aaagttacta 601 atttgtggac taaaagtgaa ggaaatagac cagaggacta actataaagc caatccacac 661 tgaaaacaat cggactcgat ccgataccgc acagttatgg aacactttca tcaaatacag 721 cagcaactgg ctgctcagca acaacaacaa gtacaacagc aacagttgca acaacaccag 781 gtgcaggtcg tgcagcagaa tcagcagcag gcgcatcaga atagctccaa tacgacagcc 841 ggcgtgggca cccaacagct gttcacatac aaaatggcca gcagttttcc gaatccggcc 901 acaacgatgg cccaagtggt ggccacatcg aatgccgccg gcaccacggg ctatgactat 961 cgcctaaata tggcacaagc ggccgcagca gcagccgttc cagggtccca atggtggtac 1021 tcggccgcca atcagggcca ggtcgatgcc aatacagcgg cgcaactgca gcaccagcag 1081 cagcaacagc agcagcagca gcaacagcag cagcaacagc accagcagca acaacagatg 1141 caacagcagc aacagcaaca gaatgtcatc aattcggcag cgagcccaat gatcagaggt 1201 ggcaaggccg atgccaagcc cagaggccga atgaccgcct acgcatactt tgtacaaact 1261 tgcagagagg agcacaaaaa gaagcatccc gatgagacgg tgatattcgc cgagttctca 1321 cgaaagtgtg ccgagaggtg gaagacaatg gtcgacaagg agaagaagcg tttccacgaa 1381 atggccgaga aggacaagca gcgatacgag gcggaaatgc agaactatgt gccgcccaag 1441 ggagcggttg tgggacgcgg caagaagagg aaacaaatca aggatcccaa tgctccaaaa 1501 cgttcattgt ctgcgttctt ctggttctgc aatgacgaaa gaaataaggt gaaggcactc 1561 aatcccgagt tcggagtggg cgacattgcc aaggagctgg gacgaaagtg gtcggatgtg 1621 gatcccgagg tcaagcagaa gtacgagtcg atggcagaac gggacaaggc tcgatatgaa 1681 cgcgagatga ccgagtacaa gacgagcggg aaaatagcca tgtccgcacc gtcgatgcag 1741 gcgtcgatgc aggcgcaggc acagaaagcc gcgttacttg ccgccgctgc ccagcagcag 1801 caacaccagc tggaagagca gcacgacgac gacgacggcg atggagatga tgacgagaac 1861 caataggttt agcagtaaat actcttcact atttatacac acgcggtcgt tgtcacgagc 1921 gaaggagcga aggagaaatg aacatgataa cgttggtcga tctattatca ggttggcgcc 1981 aatgtgtgtt gaatatatat ttatatatat aagggtgttt tctttttaga ggttccgttt 2041 tccgctagcg ctaaaactat cacaatttgt tcagtagttc atctggcaat gctgtataat 2101 caattataaa atataccaat tataaatttt ttttcaaaag cagtcgtgtg aatctcgaat 2161 ggactttatt aaacttactc ccattaaaaa aacaaagaac ggtgttagtg cctctttcaa 2221 aatgattttt caaccagcca aaagtccagc caaaaatcca actggcacag aaatctcttg 2281 aactttcaaa gtaggttttc aaataaaaac attgttccta gtgtatttcg aaaaaacaac 2341 acgaaatctc aagagattct gtgaaatttg tggatttctc ttaggcaagg gcaaaatctc 2401 tacagatttc tgtgattgaa aaaccaaagc aaagcacaaa ttgttttttt tttacctttc 2461 ttaattgtga aaattttcga tggttagcgg gtaatggaac ctctaaaata cacctattat 2521 atatatgtaa atgcatatat ataaataata tataattttt tttttttaac ataagtaatc 2581 aaatttccat gaattatgaa gataaatcac aaagaaacct tttataagtt ctatgttaag 2641 atgaatacga ttaagtatgg ttagattaaa agtgacactc atctgtctgc aaaccttatt 2701 tgtgcgcttc agtgctaagt ttctcttctc ctaaagtaat aagaagaatt attttataaa 2761 ttgaagataa agagaaagaa gaaattcatc attatgtcat tcgttcgttc tcagcaacta 2821 tgaagaaggt taccactaca tttataaata ttggtacata tttcccattt attaaagtta 2881 gattcaccat aatgaaacta caattaatgc gttcgagttt atgtatgtcc cccagcaagc 2941 gaaaagaaag cgaaacaaac tcaatcaaac gtgataatgt gaaatactta actcagtggc 3001 gggtgatatc tcgatctatg tttatttttt gactctctaa aacacaaata tttaaaaaca 3061 tttttaaaaa attcatttca tatttgaatt acttcattta ccagttcagt ttgcgattct 3121 tgaatttaga gatcctcgga gagatttttg ggtttgtgtt catttgtaaa tatatacatc 3181 aactataata tagccaccat caagagattt ggaaactaga tcttaggttg ttcaacgttt 3241 tgagaaggga gaaaggaggg gaaaggaaaa acgatatcgg acattgcaac aattgttgac 3301 ttggccatgt acatactatt tgaagtatta tttagatgag actacgtaga aattaacgag 3361 aatcgagagc aaataaaaaa tacaagccta atatctaata ttctaatata gagtatagag 3421 cgtagatttc agcgggactg caaagtaatg taaaaattgc gtagtaagtt tgaagggcga 3481 agtggaaact agtttttaca cgtcggtctt gagaaccaaa ccaaacccca atgttccagg 3541 cacacagaag aagtgtttat gcagatataa agggagacgt tcctccggct cttgttttat 3601 attgtattat tatcaattgt caatcggttg gatggatgtt tctctttata tcgcatgtat 3661 aagctaagta gtggttagat attataacgt gataagagag gagctgaaac tatgtctaag 3721 gacgctgtac ccctaacttc gctctcccca cgttatgagt gcgcgacgat atgtatatgt 3781 atctgtatat ctatatctat ttttttagca tcatttttga tagagaataa ctcgccaccg 3841 agattatatt cattaaagtg tttaggttaa acctttaaat cctaattttc caatcgccac 3901 acataataaa ttactatgaa aattccagtt cccctgtgcg ctttgttata agaactaaac 3961 taaaactaaa ctattataaa ataaactttt agaaatgaga ttcttttttt taccatggaa 4021 tggaatgatg tgatgtgtgt gttcttcaaa tccatttgtc ttttctatta taatttgaat 4081 gattaatggc tcttggtaca tacatattag atgacaaact tttatgttac aaataataaa 4141 aatccctata aacagc