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LOCUS XM_017143101 4179 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017143101 VERSION XM_017143101.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143101.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4179 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4179 /gene="Dsp1" /note="Dorsal switch protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058404" CDS 699..1889 /gene="Dsp1" /codon_start=1 /product="high mobility group protein DSP1 isoform X1" /protein_id="XP_016998590.1" /db_xref="GeneID:108058404" /translation="MEHFHQIQQTIQHYQQQLAAQQQQQVQQQQLQQHQVQVVQQNQQ QAHQNSSNTTAGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQA AAAAAVPGSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQQ QQNVINSAASPMIRGGKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKC AERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKR SLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARY EREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQQHQLEEQHDDDDGDGDD DENQ" misc_feature 1239..1445 /gene="Dsp1" /note="first high mobility group (HMG)-box found in the high mobility group protein B (HMGB) family; Region: HMG-box_HMGB_rpt1; cd21978" /db_xref="CDD:438794" misc_feature order(1239..1247,1254..1256,1263..1268,1272..1280, 1290..1292,1299..1301,1320..1325,1329..1334,1338..1346, 1350..1355,1365..1367) /gene="Dsp1" /note="p53 binding site [polypeptide binding]; other site" /db_xref="CDD:438794" misc_feature order(1239..1241,1245..1250,1254..1268,1275..1280, 1323..1325,1329..1334,1338..1346,1353..1355,1362..1364) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438794" misc_feature 1479..1721 /gene="Dsp1" /note="high mobility group (HMG)-box domain superfamily; Region: HMG-box_SF; cl00082" /db_xref="CDD:469606" misc_feature order(1524..1526,1530..1544,1551..1556,1575..1577, 1611..1616,1623..1625,1632..1637,1656..1658,1668..1670, 1677..1679,1689..1691,1698..1700) /gene="Dsp1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:438792" polyA_site 4179 /gene="Dsp1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acagtaagca gagacggcaa ttcaattcat ttcattcgtt gttggtactc tctgtgtgtg 61 ttttcaataa agcgagcggc gcgcgaacgg gccatatatt ctgtattctg ttctgtattt 121 tccgcatcgc attcgcattg atacgacacc gtactgtgtg ctgttgtgta tagtgtatgt 181 accacaccaa caaaacacag gcgatacgac acgatacaaa gcgtatgcag cgctgtttgt 241 ttatttttta caagttaaaa caaacgacaa aacaaatcag ccaagccgcc cgcgtttcgc 301 gctgcaaata ataatagaaa aaacaagcga aaaacaaaaa cgtgtgcatt gtgaatttga 361 aattttcgaa ttttgagttt cgaatttttg gcttgtatcg tcgtacacca ccgtacatac 421 atacatacat tttcgtattc gtgtgcaata atcaatacaa tacaacgtac aacaaactgc 481 gtagaacagt attaaaaaaa aagaaacgga aaaaagacaa aactggctca agacttgcgt 541 tcgtgtgcgt tttacataca catacaacat agatttctgt gcaagaagaa agaaagttac 601 taatttgtgg actaaaagtg aaggaaatag accagaggac taactataaa gccaatccac 661 actgaaaaca atcggactcg atccgatacc gcacagttat ggaacacttt catcaaatac 721 agcaaacaat tcaacactat cagcagcaac tggctgctca gcaacaacaa caagtacaac 781 agcaacagtt gcaacaacac caggtgcagg tcgtgcagca gaatcagcag caggcgcatc 841 agaatagctc caatacgaca gccggcgtgg gcacccaaca gctgttcaca tacaaaatgg 901 ccagcagttt tccgaatccg gccacaacga tggcccaagt ggtggccaca tcgaatgccg 961 ccggcaccac gggctatgac tatcgcctaa atatggcaca agcggccgca gcagcagccg 1021 ttccagggtc ccaatggtgg tactcggccg ccaatcaggg ccaggtcgat gccaatacag 1081 cggcgcaact gcagcaccag cagcagcaac agcagcagca gcagcaacag cagcagcaac 1141 agcaccagca gcaacaacag atgcaacagc agcaacagca acagaatgtc atcaattcgg 1201 cagcgagccc aatgatcaga ggtggcaagg ccgatgccaa gcccagaggc cgaatgaccg 1261 cctacgcata ctttgtacaa acttgcagag aggagcacaa aaagaagcat cccgatgaga 1321 cggtgatatt cgccgagttc tcacgaaagt gtgccgagag gtggaagaca atggtcgaca 1381 aggagaagaa gcgtttccac gaaatggccg agaaggacaa gcagcgatac gaggcggaaa 1441 tgcagaacta tgtgccgccc aagggagcgg ttgtgggacg cggcaagaag aggaaacaaa 1501 tcaaggatcc caatgctcca aaacgttcat tgtctgcgtt cttctggttc tgcaatgacg 1561 aaagaaataa ggtgaaggca ctcaatcccg agttcggagt gggcgacatt gccaaggagc 1621 tgggacgaaa gtggtcggat gtggatcccg aggtcaagca gaagtacgag tcgatggcag 1681 aacgggacaa ggctcgatat gaacgcgaga tgaccgagta caagacgagc gggaaaatag 1741 ccatgtccgc accgtcgatg caggcgtcga tgcaggcgca ggcacagaaa gccgcgttac 1801 ttgccgccgc tgcccagcag cagcaacacc agctggaaga gcagcacgac gacgacgacg 1861 gcgatggaga tgatgacgag aaccaatagg tttagcagta aatactcttc actatttata 1921 cacacgcggt cgttgtcacg agcgaaggag cgaaggagaa atgaacatga taacgttggt 1981 cgatctatta tcaggttggc gccaatgtgt gttgaatata tatttatata tataagggtg 2041 ttttcttttt agaggttccg ttttccgcta gcgctaaaac tatcacaatt tgttcagtag 2101 ttcatctggc aatgctgtat aatcaattat aaaatatacc aattataaat tttttttcaa 2161 aagcagtcgt gtgaatctcg aatggacttt attaaactta ctcccattaa aaaaacaaag 2221 aacggtgtta gtgcctcttt caaaatgatt tttcaaccag ccaaaagtcc agccaaaaat 2281 ccaactggca cagaaatctc ttgaactttc aaagtaggtt ttcaaataaa aacattgttc 2341 ctagtgtatt tcgaaaaaac aacacgaaat ctcaagagat tctgtgaaat ttgtggattt 2401 ctcttaggca agggcaaaat ctctacagat ttctgtgatt gaaaaaccaa agcaaagcac 2461 aaattgtttt ttttttacct ttcttaattg tgaaaatttt cgatggttag cgggtaatgg 2521 aacctctaaa atacacctat tatatatatg taaatgcata tatataaata atatataatt 2581 tttttttttt aacataagta atcaaatttc catgaattat gaagataaat cacaaagaaa 2641 ccttttataa gttctatgtt aagatgaata cgattaagta tggttagatt aaaagtgaca 2701 ctcatctgtc tgcaaacctt atttgtgcgc ttcagtgcta agtttctctt ctcctaaagt 2761 aataagaaga attattttat aaattgaaga taaagagaaa gaagaaattc atcattatgt 2821 cattcgttcg ttctcagcaa ctatgaagaa ggttaccact acatttataa atattggtac 2881 atatttccca tttattaaag ttagattcac cataatgaaa ctacaattaa tgcgttcgag 2941 tttatgtatg tcccccagca agcgaaaaga aagcgaaaca aactcaatca aacgtgataa 3001 tgtgaaatac ttaactcagt ggcgggtgat atctcgatct atgtttattt tttgactctc 3061 taaaacacaa atatttaaaa acatttttaa aaaattcatt tcatatttga attacttcat 3121 ttaccagttc agtttgcgat tcttgaattt agagatcctc ggagagattt ttgggtttgt 3181 gttcatttgt aaatatatac atcaactata atatagccac catcaagaga tttggaaact 3241 agatcttagg ttgttcaacg ttttgagaag ggagaaagga ggggaaagga aaaacgatat 3301 cggacattgc aacaattgtt gacttggcca tgtacatact atttgaagta ttatttagat 3361 gagactacgt agaaattaac gagaatcgag agcaaataaa aaatacaagc ctaatatcta 3421 atattctaat atagagtata gagcgtagat ttcagcggga ctgcaaagta atgtaaaaat 3481 tgcgtagtaa gtttgaaggg cgaagtggaa actagttttt acacgtcggt cttgagaacc 3541 aaaccaaacc ccaatgttcc aggcacacag aagaagtgtt tatgcagata taaagggaga 3601 cgttcctccg gctcttgttt tatattgtat tattatcaat tgtcaatcgg ttggatggat 3661 gtttctcttt atatcgcatg tataagctaa gtagtggtta gatattataa cgtgataaga 3721 gaggagctga aactatgtct aaggacgctg tacccctaac ttcgctctcc ccacgttatg 3781 agtgcgcgac gatatgtata tgtatctgta tatctatatc tattttttta gcatcatttt 3841 tgatagagaa taactcgcca ccgagattat attcattaaa gtgtttaggt taaaccttta 3901 aatcctaatt ttccaatcgc cacacataat aaattactat gaaaattcca gttcccctgt 3961 gcgctttgtt ataagaacta aactaaaact aaactattat aaaataaact tttagaaatg 4021 agattctttt ttttaccatg gaatggaatg atgtgatgtg tgtgttcttc aaatccattt 4081 gtcttttcta ttataatttg aatgattaat ggctcttggt acatacatat tagatgacaa 4141 acttttatgt tacaaataat aaaaatccct ataaacagc