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LOCUS XM_017143092 4451 bp mRNA linear INV 09-DEC-2024 (LOC108058399), mRNA. ACCESSION XM_017143092 VERSION XM_017143092.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143092.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4451 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4451 /gene="LOC108058399" /note="AF4/FMR2 family member lilli; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058399" CDS 326..4171 /gene="LOC108058399" /codon_start=1 /product="AF4/FMR2 family member lilli" /protein_id="XP_016998581.2" /db_xref="GeneID:108058399" /translation="MFRWDGCLALIVLLQLGGVTLALPNIQGVNVQQQLDKSFFQPPE IEQTIDEVQKILANDPALPRLTRGEIEELYEKVTREEYEKSLEAGDMSRADSMRALML VLPFNTDNNTEENLQELYTRKPVTRVIDAYTPPDPVKFLTPDPSALPRSTVPGGNPAV AATTYKPAYSIQQNHPLQQQQFRPMPQATTYHPPAPPPVVYQDFKPVTAVAPPPPAAA RFSSHYSAKNAQFLRKPKPKSTSSSTVKPVADILESLGIVSGGKSDSSGAAHKRYALD DYYLPAESAPQPSVVAVADLRGLQGARIRPEAYSNFKPLNIGEELRVKPEVEGYLTRF GIVKKAPKALKKEVVKPTEEPTGAHTELSTATARLPSANSNPTGNAELAKLLENLQEL ERLQLQTKRKSTPTKSSTTRSTTTSTTTPSTTTSSTSTSSTTTTTTPSPLPLITHGEP LLIEAKKPRRRIDPNIDLNFASAGNHQTTASSSDELSKLLQNLQELEKLKINPENVIK AASPSVQELSRGFTTTTSSTTTTTTPSPAQNEARELQRILKQLQQLEQQQTISRKTST TSTTVKPTRSQGLGLGAADLLQLQRLLSDDRELEKLYEQARNGKKKQQPKVTTSSTST STTSTTTTPRPTPSVNHEQFAALITRVQQLEQLQQPSSTTPPNFLTRNVAGSGIFESL PSNDFAHLQELSPTSSSRGGGDLLQVEISTAASTSKQRQRPLSHFERSNGLARQDEVH PQDYVQLQKLLSKVQELERVQLVTQSQSQLPSQLVTAASVRTPNVKTLNGAHIVYAEP AKEQQVDPEPELKLDLPVYQKPQQTASQSSSEELRELAMSQPAHPSASSPDFREFQQF FGSLEDTGERQSYQHMQPIYKQAVTPPAPPRFVPARRMPSTTPPRKADLEELQKLLYN TQQLQKLGVALPHELSQQLESQLQATSTTSSSTTSTTTSTTPAPVQIHDTSSPAVFSL TTSRPREAKPKPQTTESSLQLPVFSATKIIEAAIKRAANRIGVSTELAPKQQGNLLKG LGVGFRRRSDEGDDEMENLHEDEEREGELDGDLMAEFSELNYQLAKPETTLKEKREDQ GGSGGKSQLSELQRLISNLQELQQLNVSLDQVATVPPPPVSPDAAYLQSLQNGQDETL KSRRQSEGNGTASTEENKEDTTTQSPTKISLNLGLDDGDTKGAGEEVEDSSSTSSSST TTTTEESRNGSLDDLADSFGPDPVSEEPPPPKKKNGFYFLADWNSFLEVGDGDDQVVV RLSPKIGDPRLFLPVKIPS" polyA_site 4451 /gene="LOC108058399" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acgctcattg aaaatggtct gcaggccgcg catgcgcttc agtccgaaaa cgaaacaaaa 61 tcaaaaccaa aaaccaaacc gattccgata taaaagccaa gcgacagtcg cgtgttcgcg 121 ttttgcttcg ttttaatttc ggtttttctt tcttttaata ttttttttaa ctgtgtaaaa 181 aataaagtgt tgtgtgtgct gtgctctgtg tgcattggaa gtttgacgcc tctgagagtt 241 gtgaaaaagc ctctcgattt taaatcgatt ttaaaatttg gaaggcgaac gtgagcggcc 301 gaaaattgaa aattcctcga tcaggatgtt ccgttgggat gggtgcctgg cgctgatcgt 361 cctcctgcag ctgggaggcg tgacgctcgc cctgccaaac atccagggcg tgaacgtgca 421 gcagcagctg gacaagagct tctttcagcc gccggaaatc gagcagacga tcgacgaggt 481 gcagaagata ctggccaatg atccagccct gccaagactg acgcggggcg aaatcgagga 541 gctgtacgag aaggtgaccc gcgaggagta cgaaaagagc ctggaggcgg gcgacatgag 601 ccgggcggac agcatgcgcg ccctgatgct cgtcctgccc ttcaacacgg acaacaacac 661 ggaggagaat ctccaggagc tgtacacccg gaagccagtc acccgggtca tcgatgcgta 721 taccccgccg gatccagtga agttcctcac accagatccc tctgctctgc caaggagtac 781 ggtgcctggt ggaaatcctg ccgtggcagc gaccacctac aagccagcct acagcataca 841 gcagaatcat cctctccagc agcagcagtt tagacccatg ccgcaggcca ccacctacca 901 tccgccggct ccaccaccgg tggtctatca ggatttcaag ccagtcactg ctgttgctcc 961 acctcctcca gccgccgcta ggtttagctc ccactacagt gccaagaatg cgcagttcct 1021 gaggaaaccc aaaccgaagt caacctcctc cagtacagtg aagcccgtgg cggacatact 1081 cgagagtttg ggcatcgttt cgggtgggaa aagcgattct tccggtgccg cacacaagcg 1141 atatgccttg gatgactatt atctcccagc ggagagtgcc ccgcagcctt cggtggtggc 1201 ggtggcggat ctgaggggcc tccagggagc acgcatccga ccagaggcct actcgaactt 1261 caagcccttg aatattggcg aggagctgag ggttaaaccc gaggtggagg gctatctcac 1321 aagatttggg attgttaaaa aagcacccaa ggcgctgaag aaggaggtgg tcaagccaac 1381 ggaggagccc actggtgccc atacggagct gtccacggca acggccaggt tacccagtgc 1441 caattccaat cccacgggca acgccgagtt ggccaagctg ctggagaatc tccaggaact 1501 ggagcgactt cagttgcaga caaaaagaaa aagtactcct acgaaaagca gcactaccag 1561 aagtactact accagtacta ctactcccag cactactact tctagtacct ccaccagtag 1621 tactactact acaactactc cttctccttt acccctcatc acccatggcg aaccactgct 1681 catcgaggcc aagaagccgc gccgacgcat cgatcccaat atagacttga actttgccag 1741 tgcgggcaac caccagacga cggccagcag ctccgatgag ctgtccaagc tgctgcagaa 1801 cctccaggag ctggagaagc tgaagatcaa tccggagaat gtgatcaagg cggccagtcc 1861 gagtgtgcag gagttaagca ggggttttac tactactact agtagtacta ccaccaccac 1921 tactccttct cccgcccaaa atgaagcaag ggagctgcag cgaatcctca agcagctgca 1981 gcagttggag cagcagcaaa ccatcagcag gaagaccagc acaacgagca ccacggtgaa 2041 gccgacgagg agtcagggct tgggcctggg tgccgccgat cttctccagc tgcagcgact 2101 cctgagcgac gatcgcgagc tggagaagct gtacgagcag gccaggaatg ggaaaaagaa 2161 gcagcagccg aaggtgacca ccagtagcac ctccacttca accacctcta caaccaccac 2221 gccacgaccc actccctcgg tgaatcatga gcaattcgcc gccttgatta cccgcgtcca 2281 gcagttggag caactgcagc agcccagcag caccacgccg cctaatttcc ttaccagaaa 2341 tgtggcggga tcggggatct ttgaatctct gcccagcaac gattttgccc atctgcaaga 2401 gctctcacca acctcttcct cccgaggagg aggagacctg ctccaggtgg agatctccac 2461 ggcggcatcg acttccaagc aaagacaacg acctctgagt cactttgagc gtagcaatgg 2521 cctcgcccgg caggacgaag tgcatccgca ggactatgtg cagctgcaga agctgctgag 2581 caaagtgcag gaactggaga gggtgcaact ggtgacccaa tcgcagtcgc agcttccatc 2641 tcagctggta accgccgcct cggtgcgcac gcccaatgtg aagacgctca atggagcgca 2701 cattgtctac gctgagccgg cgaaggagca gcaggtggat cccgaacctg agctcaagct 2761 ggatctaccc gtttaccaga agcctcaaca gacagcctct caatcctcca gcgaggagct 2821 gcgtgaactg gccatgagcc agcccgccca tcccagcgca tcctcgccag actttcggga 2881 gttccagcag ttctttggca gcctggagga tacgggcgaa aggcagagct accagcatat 2941 gcagcccatt tataagcagg ctgtgactcc tcctgctccg cctcgttttg tgcccgccag 3001 gagaatgcct agtactactc cacctagaaa agcagatctc gaggagctgc agaagctgct 3061 gtacaacacc cagcagctgc agaaactggg cgtggccctg ccccacgagc tctcgcagca 3121 gttggagagc cagctgcagg ccacctccac cacatcctcc tccacaacta gcactacaac 3181 tagcacaact cctgctcccg ttcaaatcca tgatacctcc tcgccggctg tcttctcgct 3241 gaccaccagt cgtcccaggg aggcgaaacc caagccccag acgacggaga gcagcctgca 3301 gctgcccgtt ttcagtgcca ccaagattat agaggcggcc atcaaaaggg cggccaatag 3361 gattggtgtg agcactgaac tggcgcccaa gcagcaggga aatctgctca agggtttggg 3421 cgtgggtttc aggcgacgca gcgatgaggg ggatgatgag atggagaatc tccatgagga 3481 tgaggaaaga gagggcgaac tggatggcga tctaatggca gagttcagtg agctcaacta 3541 tcagctggcc aaaccggaga cgacgcttaa ggaaaagagg gaggatcaag gaggatcagg 3601 aggcaagagt cagctgagcg aactgcagcg cttgattagc aatctccagg agctgcagca 3661 gctcaatgtg agcctggatc aggtggctac agttcctcct cctcctgttt caccagatgc 3721 cgcctatctg cagtccctgc aaaatggtca ggatgagacc ttaaaatcaa gacgacagag 3781 cgagggaaat ggaactgcta gtacagagga gaataaggag gatacaacca cccaatcccc 3841 caccaaaatc agcttgaatt tgggcttgga tgatggtgac accaaaggag caggcgagga 3901 agtggaggat agtagtagta ctagtagttc tagtaccacc acaacgacag aagaatcccg 3961 taatggttcg ctagacgacc tggccgactc ttttggaccc gatcccgtca gcgaggagcc 4021 accgccgccg aagaagaaaa acggcttcta cttcctggcc gactggaact cgttcctcga 4081 agtgggcgac ggcgatgatc aggtggtggt gcgtctgagc cctaagatcg gggatccgcg 4141 actctttctg cccgtcaaga ttccctcgta ggagtggctg tactccctaa gctgtacata 4201 tgttatccct ccttctaatt cctcattcca atacctcgat tgtaacccct tccgtaatgt 4261 gtgtgtattt attgtagtca ctatcccact ctccattcgg atcccgaatt ctgaatctga 4321 atcccccgta gtcgtaagct gggcctaggc tgtaagagtc aatcaccaat cactgtcacc 4381 gagtcgtggt taatgctatg tatatgtgta actagagctc tcgaaataaa gatatatcta 4441 cttagttaaa a