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LOCUS XM_017143088 5817 bp mRNA linear INV 09-DEC-2024 (Atf3), mRNA. ACCESSION XM_017143088 VERSION XM_017143088.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143088.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5817 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5817 /gene="Atf3" /note="Activating transcription factor 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058396" CDS 240..2099 /gene="Atf3" /codon_start=1 /product="activating transcription factor 3" /protein_id="XP_016998577.2" /db_xref="GeneID:108058396" /translation="MFNSNIPASSLLGLDQSGLLMGGHTPKTPEILNSLIAMTNPLDN FSFSSAAAAAVSAAVSASAASSASCSAASTPVVTVRHFNGGHPNGQSHSQDSSHSSCS GSPLDSPAGTATTPSVQQTCSRLIKEGLKLSIQSKRKLSTCDSSSGSEQPHSKYSRRS NHNGGGGGHSGSSSNNNYSGSLSNANDLDDDCGLEEESSDEDSETKSSQPKGLTPEDE DRRRRRRERNKIAATKCRMKKRERTQNLIKESEVLDTQNVELKSQVRLLETERRKLMD MLQSHGCQRAGGCQLPNQLLQSPAQKYLSELELETANEVANSGCSSNNQRLQSIPSIA TFKYGSKTAAAMAQQLPNGYCKPSPSAQEFEHAGYQQSLNTADQQQQQGNPIPIPSPS LISDYVPNCEGLTTTSSSSNPNSSNASSSSSNISTSNNNISNATSNNTSATTPTAIAS TTSSSSAIEFVKNELVDSQSPYTTALSAERFLFEPSDGFPDIKHACVLPSPCGINSLS MVHTNQGASANGNINNNVNQNNNNNNNNNNNNNHLMDFHHGGLQHGNHNIGVGVGVGV GVGVMTPYDDEQLLLMKNGCYASDLMSQLVEDCGEYVDLDTATAFMNNGSCLA" misc_feature 921..1082 /gene="Atf3" /note="Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain; Region: bZIP_ATF3; cd14722" /db_xref="CDD:269870" misc_feature 921..1073 /gene="Atf3" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:269870" misc_feature order(954..956,963..968,975..980,984..989,996..1001, 1005..1010,1017..1022,1026..1031,1038..1043,1047..1052, 1059..1064,1068..1073) /gene="Atf3" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:269870" polyA_site 5817 /gene="Atf3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaaaagtgtg tgcctccaga aacctaaaat atataaatat atatatacaa aaaagaatac 61 tttttggaca gtccaaacaa ccaatgcaac gcgtaggcct tcaactgtga tttaagaata 121 tataacaaaa aaagaagaag aaaaataaga aaaaaccaac cccgtttgtt aacattaagt 181 tttattagtt tgtattatta ttaacttacc gcgtgtgcaa ctgctaacag ctaaccaaca 241 tgttcaactc caacataccg gcctcctcgc tgctcggcct cgaccaaagc ggcctgctga 301 tgggcggcca tacgcccaag acgcccgaga tcctcaactc gctgatcgcc atgaccaatc 361 cgctggacaa ctttagtttc agttcggcgg cagcggcggc cgtttcggcg gccgtttccg 421 catccgccgc ctcgtcggca tcctgcagtg ccgcctccac gccggtagtt accgtgcgtc 481 acttcaacgg cggtcatccc aacggccagt cgcactcgca ggacagcagt cattccagtt 541 gctccggatc gccgctcgac tcgccagcgg gcacggccac cacgcccagc gtccaacaga 601 cctgctcgcg tttaatcaag gagggcctca agctgtccat ccagagcaag cgcaagctct 661 ccacctgcga ctccagctcc ggttcggagc agccgcactc caagtactcg cggcgcagca 721 accacaacgg cggcggcggc ggacacagcg gcagcagcag caacaacaac tacagcggca 781 gcctgagcaa cgccaacgat ctggacgatg actgcggcct ggaggaggag tccagtgacg 841 aggatagcga aacgaagtcg tcgcagccca agggactgac gccggaggac gaggaccgca 901 ggcggcggcg tcgcgagcgc aacaagattg cggccaccaa gtgccggatg aagaagcgcg 961 aacgcaccca gaatctgatc aaggaatcgg aggtgttgga cacccagaat gtggagctga 1021 agagccaggt gcgtctgctg gaaacggagc gccggaagct gatggacatg ctgcaatcgc 1081 atggttgcca acgcgccgga ggctgtcaat tgcccaatca gctgcttcaa tcgccggccc 1141 agaaatatct aagtgaattg gagctagaaa cggcgaacga ggtggcaaat tccggctgca 1201 gcagcaacaa ccagcggcta cagagcatac cctcgatagc cacgtttaag tacggttcca 1261 aaacggcggc agcgatggct cagcaactgc ccaatggcta ttgcaagccc tcgccgagcg 1321 cccaggagtt tgagcatgcc ggctaccagc aatcgttgaa taccgccgat cagcagcagc 1381 agcaggggaa tcccattccc attcccagtc ccagtctgat ttccgactat gtgcccaact 1441 gcgaaggcct gaccaccacc agcagcagca gcaatccaaa cagcagcaac gccagcagca 1501 gcagcagcaa tatcagtacc agcaacaaca acatcagcaa tgccactagc aacaacacca 1561 gtgcaacaac gcccaccgca atagccagca ccaccagcag cagtagcgcc attgagtttg 1621 tcaagaacga actggtggac tcgcagagtc cctacaccac cgccttgagt gccgagaggt 1681 tcctttttga gcccagcgat ggttttccgg acatcaagca tgcctgtgtt ctgccctcgc 1741 cctgcggtat caatagcctc agcatggttc acacgaatca aggcgccagt gctaacggaa 1801 atataaacaa taatgttaat cagaataata ataataataa caataacaat aataacaaca 1861 atcacctgat ggacttccac catggtggcc tgcagcatgg taaccacaac attggcgtgg 1921 gcgttggagt aggtgtaggt gtgggtgtga tgacgcccta cgacgatgag cagttgctgc 1981 tgatgaagaa cggctgctat gccagcgatt tgatgtccca actggtggag gattgcggcg 2041 agtatgtgga tttggacacg gccaccgcct ttatgaacaa cggcagttgc ctggcgtgag 2101 gaagggcgcc ggacagggag cgggatcgag aaagggaccg cgacctgctg ctcctagcct 2161 tcgatcagcc gcagcaacag caacagcggg agcaacctac tgcagagaag gaggagccac 2221 cagcacaact tgatcggcag gtggaactcg aactcgaaat ggagctgcaa ttgggagagg 2281 agcaagatcc gccggcctgg gcccacgtag actactggtg ctaggccatc atcgtaaacc 2341 ctatataaac taataatgtt aatcctaatc gccactcatt gactaagcaa aagcaggagt 2401 aggagtacag acaaagataa agaaacagaa gccgcagtca gtccccctaa gacaacccat 2461 aacccataac aatccggccc tattatttcc caaataattt acccaaaaat tctaactttt 2521 tctgatattt atttgcactc aacatttttc aagtcacctc tttatttttt tttttttttt 2581 ggtaacccag caatccaagt tcttccaata ggcccccatc ccgcaattca atcatggacc 2641 actcgaatat aatccccaag ccccagattt acatatatgt acccccagaa cctttgatcc 2701 caagtccgcc tggagccggc atccagcctg tggcttaact acctcatgaa gaaagaagca 2761 gaaacaatta acaagtaact atcattaaag agctgtaagg agagtaaggt gtaaagaacg 2821 taggacgatg gacgacaaaa gagcagaagc agaagaagaa tcgagaagag gagatgagat 2881 gagagcacac aaactcaaac gaagaagcac ttgcacaact gtacataacc caatttttga 2941 tacgataact cggtatatcg ataacattcc atttgcaagc ctgcgcctgc gacataacca 3001 agtcgagaga agaagatgag cagtgatcaa ctgctagcag tcacatccgc atcagtaatt 3061 attaatttta atttgttcga ttctttttct atttgttttt gtttttgttt tctctttcct 3121 cccaacgaag ccttaaaaat tatattaact atgcttatat atgtatatgt gtaaacaaca 3181 atcgagagag attagcaagg aggggaaatc aaattgagaa ttcgatgcag aattaggaag 3241 cccatgcgat atgacgtttg atattttttt tctaaaaact agatttagtc agtgataaaa 3301 cctatatata tataccgtat atataaacaa aatacatgta tgaatttttg tttttttttt 3361 gtgtccatac tttgtaagct atgtttaaac gatgagcaaa caattgtgta agctgctgtt 3421 gccttaatca aaaattaaaa cgacaaaaaa aagatctttt aattgacaac taaaactaaa 3481 ttgctaatct acactttgtt aaatcttttg caaaactaat ctacatatac aagaacaaaa 3541 aatatttaaa tattatatat atataaaaaa acaagagaga taaatgtaga gacaaatgta 3601 catatgtttg atgtatgaat tggtggaatc gaagacctta aagtgctgct aaaattgaaa 3661 ctttgcaact cctttcaact tgcgccttat tacagtttaa caagaacaac aacacttttg 3721 taatttatac tatatacata aaaaacggaa gtccaagaat atttatacaa acaaacgtgt 3781 actaaaacaa agtaaatctt atatatttgt gtgtctattg cttgatcaac gagttgaagc 3841 cgagttcatt tatatataaa taaatatata tatacataat tatatacaga tataacagtt 3901 atatatatac aaaagtgtgt gtatgaacag ctgtgaacac caaaaagtgg cctaaaaaac 3961 aaaaataatt cccctcacaa caagtgcttt gaaattgttt cgtaatcgta atcgagttaa 4021 tcgataatcg agataatcaa caaattatat ctatgtaaaa tatgcaaaag aactatttat 4081 aatattttaa cgaacccgag ctcttcaagc ctcttgagca ccgccttttt cgctagttgt 4141 accaagtcta ccataatgtt atgtcaccca aaaaaatccc cccaaaatcc aaaatatatc 4201 caaaataacc cccacgaaaa tgcgtgccta tttgccccaa aatatgattg ttaagcattt 4261 aaccaacaaa gctaaagcca atcctctcgg aatggagctt taaaattgaa aaaaaattga 4321 attgagcctt accttaagca aagtttacct cacacactca cacaaaacac tcgcacacaa 4381 aatacagaca cacaaagagg caaccctaga aaatgtaagg ttagggactt cactcgccga 4441 caattgatat tacgacgttc agcttccaaa caaaaaagag aaaaacaaaa aaattaaaaa 4501 aaaaaataac aaaaaaataa tttaatttaa aataaacaac tcaggtcaag cgagtggagg 4561 agctgccagg gctgtcacca cattcgatgt taaatgtaat tcgtaactgt aaatgctaac 4621 tgtaaaccgt aattgtaaat ggcaaaatgc aatcaagtcc atgaaagcaa agtttccgct 4681 tgtaaatttc gtttattttt gtattatttc ttgatatgtt tgtttgtttt tcgattaata 4741 tattctctaa tatatatgtg tatctacata aatacgacct taaagagtcg caattgagtt 4801 taagtttggg gtttgtgggc ttcgcttctg ccagcagctg aaaaaggccg aaaaatatct 4861 tattaataga gcattgtaga attagatcaa catcatcgga aagccatcca tcgctctctc 4921 atccacgcag gattcaatcc aatcttaagt ggcgcatcag cattttcgaa ctttgacctc 4981 tgacctttga ccttgaccta aacaccgacc cctcatcttt agtttttaat tttaggctac 5041 acaacaacgt ttgtttaaca aaaagcaatt aacttaaaca cacaacatgc gctacgaaag 5101 tacctggaca aatgtaacga ttaacgatca acaataacaa tagatcaatc ttggttattg 5161 tcttaaaaat cgcaaaccga actcagctgc aggcagaaac ggagctgaaa gcccccttca 5221 aagaaatccg ttcaattgta tagccctaga ccctatatat atatgatcta tatatccatg 5281 tatattgcta atgatattga taaagttaca tcaatttata tgtgtaaacc gcaagagcaa 5341 gcaagcaacc aacaaacaaa gaaaactccc acaaactgtg ctaaagcaaa cgtaagaaat 5401 aatagaaaaa actgaaacaa aaaaaaagaa aagtgtcgag agagtccaga tgttatttgt 5461 gtaattttga ccagagcaaa aatatacgat aaatagatct agccgactaa tgtgactaat 5521 gtgaaaaagc caagcaagag gaacataaga acaacagcaa ccaacaagcc caatcaaata 5581 aatgtctaac tgaatgataa ttgataaagt cgatgattat gttaactctc atcccctcaa 5641 gtcatccata tccccatcct tatccagtgt tttaatgtca ttctgtatct ctaaacgctc 5701 gctgtatccg catctatatc tgtatatctc taactgtctc tgtaaaccat ctccgatccg 5761 aaacacaacc gatcacactc taaaagaact acaataaaat tcaagtttaa tatcaaa