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LOCUS XM_017142791 2264 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017142791 VERSION XM_017142791.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142791.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2264 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2264 /gene="XRCC1" /note="DNA repair protein XRCC1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058197" CDS 216..2042 /gene="XRCC1" /codon_start=1 /product="DNA repair protein XRCC1 isoform X1" /protein_id="XP_016998280.2" /db_xref="GeneID:108058197" /translation="MPIAVFKSVREVSSEDAVHGAANLLKESAGRKWRIRSPGEKSAY VILEFEDPQQITGIDIGNEHAAFVEVLVSRTGCQADDFRELLLSSSFMTPIESKNSSN PNRVRCFSGSALAESVLPEKWKLLKIVCTQPFNRHVQYGLSFVKVHVMATPAAAPPKV KSLLPQGIMQFGAFKLREESPDSETDNQVNRFQRWKKETTAIQSTAAAIRDAGSTALR RLSTGKVAVSSLAASPAPSPVSGSPAPSDAKPLDRNRASLLFGDDDDDENEAADEGNA KKQRLSKHLEADKDRRRLEQEKERESKKNKSSRHSLDKSTSREEKSSAKEHRSSSKEE RSKERSHSKEEKSVRTGDKCTSKHPDSSKAKESPRPSAQKRHSSPTAGAAAATPAKKQ KVKDTPIQYRPFNQLLKGVLLVISGIQNPDRADLRSKAIALGAKYKADWEPGCTHLIC AFKNTPKYNQVRGKGKIVTRSWIEKCYSLKKYLPWRRYALDTNDFGQPESDEEVCDEA MKPSSRRESSEDDVEMLQDNRVKTTYDAEVPEDRKKVDIRQDASSGIDTEDELERVKQ ENNARKTKPKTPTKTKSSDVYDASTDEEEYLVLKKKQITSVD" misc_feature 216..656 /gene="XRCC1" /note="XRCC1 N terminal domain; Region: XRCC1_N; pfam01834" /db_xref="CDD:460356" misc_feature <1044..1391 /gene="XRCC1" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 1443..1679 /gene="XRCC1" /note="First (central) BRCT domain in X-ray repair cross-complementing protein 1 (XRCC1) and similar proteins; Region: BRCT_XRCC1_rpt1; cd17725" /db_xref="CDD:349357" polyA_site 2264 /gene="XRCC1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcagtgt tttattttta aaatattcgt caaaacaaaa acataacttc ctgtttacat 61 cggtaaaacc aggaaaatag cttagctcag ataagccaat tgccttggca atttcccagc 121 caaaagatca cagatcagtg tgttaaaact gcgtgtttaa tcaataagtt ggcccaagga 181 atttcccgcc aaattagcgg cgtctgaact tcgcaatgcc cattgcggtt tttaagtccg 241 tgcgcgaggt gagcagcgag gatgcggtgc acggggccgc gaatctgctg aaggagagcg 301 ccggcaggaa gtggcgcatc cggtcgcccg gcgagaagtc cgcctacgtg atcctggagt 361 tcgaggatcc gcagcagatc acgggcattg acattggcaa cgagcacgcc gccttcgtcg 421 aggtcctggt cagccggacg ggctgccagg cggacgactt ccgggagctc ctgctgtcca 481 gctccttcat gacgcccatc gagagcaaga actcgagcaa cccgaaccgg gtgcgctgct 541 tcagcggctc cgccttggcg gagagcgtcc tgccggagaa gtggaagctg ctgaagatcg 601 tgtgcacgca gcccttcaat cgccacgtcc aatacggcct gtccttcgtc aaggtccatg 661 tgatggctac gccggcagca gctccgccga aggtcaaatc cctgctgccg cagggcatca 721 tgcagtttgg ggccttcaag ctgcgcgagg aatcccccga ctcggagacg gacaaccagg 781 tcaaccgatt tcagcgctgg aagaaggaaa caactgcgat ccaatccaca gcggctgcca 841 ttcgggatgc gggctccaca gccctgcgaa gattgagcac tggcaaggtt gccgtttcca 901 gcctggctgc atcgcctgct ccatcgcctg tttcaggatc tcctgctcct tcggatgcca 961 agcccctgga tcgcaatcga gcctccctgc tgtttggcga cgatgatgac gatgagaacg 1021 aggctgccga cgaggggaat gccaagaagc agcggctgag caagcatctg gaggcggaca 1081 aggatcgtcg gcgattggag caggaaaagg agagggagag caagaagaac aagtccagca 1141 ggcattcctt ggacaagtcc accagtcgag aggagaaatc ttcggcgaaa gaacacaggt 1201 cctcctccaa agaggaaaga tcaaaggaaa ggtcccattc aaaagaggag aaatcggtca 1261 ggacggggga taaatgtact tctaagcatc ctgattcctc gaaggccaag gagagtccac 1321 gtccgtctgc acaaaagcgt cattcgtcgc ccaccgcagg cgctgctgct gccacacccg 1381 cgaagaaaca gaaggtcaag gacacaccaa tccagtatcg tccctttaat cagttgctaa 1441 agggcgtact gctggtcatc agcggcatac agaatcccga tcgtgccgat ttgcgttcga 1501 aggccatcgc tttgggtgcc aagtataaag ccgattggga gccgggatgt acgcatctca 1561 tatgcgcctt caagaacact cccaaataca atcaagtgag gggcaaggga aagattgtga 1621 cacgcagctg gatcgagaaa tgctatagtc tgaagaagta tctgccctgg cgacgatacg 1681 ccctggatac caacgatttc gggcagccgg agagcgatga ggaggtgtgc gacgaggcga 1741 tgaagcccag ttcgcgacgc gagtccagcg aggatgatgt agaaatgctg caggacaacc 1801 gggtgaagac tacctacgat gctgaggttc cagaggatcg gaaaaaagtg gatatacgtc 1861 aagatgcctc gtcgggcatt gatacggagg atgaattgga gcgcgtgaag caagagaaca 1921 acgccaggaa gaccaaacct aagactccga caaagaccaa gtcgagtgat gtttacgatg 1981 ctagcacaga tgaagaggaa tatctggtgc tgaaaaagaa gcagataacc tctgtcgatt 2041 gagttctatt tgtaatctca tatctttcgt atacctctat atgtttaaat tgtatgtaag 2101 tctcgaattc ttgggttctg tagaactgtt tcattactta aatatcttaa gaaaatcgac 2161 gagttcaaaa tgtgtttgtt ataacatcct taaaagattg aagacatttt ttttgtttcg 2221 gcttggaccg ctttcaataa aacttacaaa aaaataacgt taaa