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LOCUS XM_017142777 1154 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017142777 VERSION XM_017142777.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142777.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1154 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1154 /gene="LOC108058185" /note="ribokinase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058185" CDS 207..1133 /gene="LOC108058185" /codon_start=1 /product="ribokinase" /protein_id="XP_016998266.2" /db_xref="GeneID:108058185" /translation="MAQNQSTEVLVFGSAIIDFICYTPRLPKPGETLHGHRFQTGYGG KGANQCVAAARQGSRTALVAKLGADTFGADYLRQLREEHINVEHVQQLAGQTTGVAQI GVSDGGENNIIIVVGANSQLSPCDVAQAEELFREAKVLVCQLETPVEATLTALRNFQG VSIVNAAPAMVDTPPELLQLASIFCVNESEAALMTQMDQIETVEEAKIAAGKLVQMGA NTVIITLGKLGAVFGSANEEYRHVAAPQVPPEKVVDTTGAGDAFIGALAHNLARHPKA QLEEHIAAACAVASQSVQLPGTQASFPRSDVQ" misc_feature 231..1115 /gene="LOC108058185" /note="Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174" /db_xref="CDD:238579" misc_feature order(252..254,258..260,333..341,348..350,504..506, 510..512,540..542,546..548,639..641,972..977,984..986, 1098..1100) /gene="LOC108058185" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature order(261..263,267..269,282..302,339..341,501..503, 507..515,531..554,708..710) /gene="LOC108058185" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature order(765..767,876..884,891..893,933..935,960..962, 969..971,978..983,990..992,1062..1064,1071..1076, 1083..1085) /gene="LOC108058185" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" polyA_site 1154 /gene="LOC108058185" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggctgattt atcaaccccc ctttgtcccg atcttggcca gaattggagt gggccagcta 61 gctgatagcg ttccgcccga aacccccgtc cttgcccttg cccctcgtcc gctggggtca 121 cctaatctcg aatcccgcga cgactgataa gcgctcactc cattctgaca acaaaccagt 181 gcattttcct ttacatttcg gctgacatgg ctcaaaatca aagcacggaa gtgctggtct 241 ttggctcggc catcatagac tttatatgct acactccccg cctgccgaaa ccgggggaaa 301 ccctccacgg gcaccgcttc caaaccggat atggcggcaa gggagccaat cagtgtgtgg 361 ccgccgctcg ccagggatcc cgcacagctc tggtggccaa gctgggtgcg gacaccttcg 421 gcgccgatta cctgcgccag ctgcgcgagg aacacatcaa tgtggagcat gttcagcagc 481 tggctggcca aacgacgggc gtggcccaga ttggagtatc cgatggcggc gagaataaca 541 tcatcattgt ggtgggcgcc aatagccagc tgagcccctg cgatgtcgcc caggcggagg 601 agctcttccg ggaggccaag gttctggtct gccagctgga gacgcccgtc gaggccacgc 661 tgacggccct gcgcaacttc cagggtgtct ccattgtgaa tgcagctcca gcgatggtgg 721 ataccccacc ggaactgctc cagctggcca gcatcttttg tgtgaacgaa agcgaggcgg 781 cactgatgac ccaaatggac caaatcgaga ctgtcgagga ggccaaaatt gcagccggaa 841 agcttgtcca gatgggcgcc aacacggtga tcattacgct gggcaaactg ggagctgttt 901 ttggttccgc caacgaggag tatcggcatg tggcggcgcc gcaagtgccg ccggagaagg 961 tggtggacac cacgggagcc ggagacgcct tcatcggcgc tttggcccac aacctggccc 1021 gtcatccgaa ggcccagctg gaggagcaca tagccgccgc ctgcgcggtg gcctcgcaat 1081 ccgtccagct gcccggaacg caggccagct ttccgcgttc tgacgtacaa taaatctatc 1141 tatctatcca tcta