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LOCUS XM_017142776 3020 bp mRNA linear INV 09-DEC-2024 (vnd), transcript variant X1, mRNA. ACCESSION XM_017142776 VERSION XM_017142776.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142776.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3020 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3020 /gene="vnd" /note="ventral nervous system defective; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058184" CDS 346..2130 /gene="vnd" /codon_start=1 /product="homeobox protein vnd isoform X1" /protein_id="XP_016998265.2" /db_xref="GeneID:108058184" /translation="MSNYNPNCGYFEDCSYYTNNVYQQDYCMQPDYEYNKHVYDLFDA KVPSSQRSGFHISDILNLEGSELKNAAAAAAAAAQHGSDLSHHSASESTNGHGGGAHA TPSALSPTPAGGSVDEHHNGSGTGGGGSSSDHHSTTEHHAQQPTSNHPQQQQHPHHHH HQQQQQQHPHLQQQHHHPHHHQQAVAPLPLGAHHQSGADAQSHAHANAAAAHLLASHN AAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQ PASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDALHGSSLTN QGGGGGPSAAHALHNNNNNSTNNNNNNSLKHEALNGASSGHDDSLNEDGIEEDIDDVD DADGSGGGANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL TPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVR NGKPCLGDGSKLGADCVSVSSVATATAMQNAAAAHHLVALNGAAAYQHAAAAAAGLHA HAHAHAAHAHAHGHAHPHAHAQRAAWWP" misc_feature 1579..1749 /gene="vnd" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 tctactatat atcggaaaat gtagctatcg atcgagtgca gtagttgact agtaatatac 61 cgataaatca cgcagtgtgc atacacatca attaaaaagt gatcgcgcat taaaaaccaa 121 ttcgagtgca aataattcgt taacaaatag ttcattaaat aattcattaa atgtgaacca 181 atcgtaatcc aactaaacaa ccacccccgg tcctttagta atttgtagta acattttttt 241 tctgttctgc tcagtttctg ttaccgttac tgttactctt tggttgccaa tttttccacg 301 attttccccg acggttcaga ttttgcgcac gcgagagcct taattatgag caattataat 361 ccgaattgcg gttacttcga ggattgcagc tattacacga acaacgtgta ccaacaggat 421 tattgcatgc agccggatta cgagtacaac aagcatgtct acgacttgtt cgatgccaag 481 gttccgtcgt cgcagcgctc cggcttccac atatcggaca tcctgaatct ggagggttcc 541 gagctgaaga atgccgcagc tgccgctgca gcagccgccc agcatggcag tgatttgagc 601 caccactcgg ccagtgagtc caccaatgga cacggtggtg gtgctcatgc cacgccctcg 661 gccctctcgc ccacgcccgc cggcggttcg gtggacgagc accacaatgg cagtggaacg 721 ggtggcggtg gatcctcctc cgatcaccac agcaccaccg agcatcacgc ccagcagcca 781 acgagcaacc acccacagca gcagcaacac ccgcaccacc accaccacca acagcagcag 841 cagcagcacc cgcacctcca gcagcagcac caccatccgc atcaccacca gcaggcggtg 901 gcccctcttc cactgggggc gcaccaccaa agtggggcgg atgcccagag ccacgcccat 961 gccaacgccg ctgccgccca tctgctggcc agccacaatg ctgccgccgc tgctgccgtg 1021 gccgccggcc aatacctgcc caatctgccc aagaacttcc ccggcagctt cggcgatgag 1081 atgtcctcgt accaccacat ggcccaaacg atgctccagc actcgggcag gagtgcgtgg 1141 atcaaggaga acgagctata cggaacccag cagccagcca gtccggatag cacttccccg 1201 gtgacatcgg aggtatcgta cacctacatc ggttccaatt gccagacatc gccggcactt 1261 tcgggcgatt acaagagcta cagccgatcg gccgatagcg atgccctatc cgtgggcgat 1321 gccctgcacg gatcatcgct gaccaatcag ggaggtggcg gaggtccttc ggcggcccat 1381 gccctgcaca ataacaacaa caatagcaca aacaataata acaacaatag cctaaagcac 1441 gaggccctga atggagcaag tagtggccac gatgatagcc tgaatgagga tggcatcgag 1501 gaggatatcg acgatgtgga cgatgccgat ggttcgggtg gcggtgccaa tggatccgat 1561 ggtctgccga acaagaagcg caaacgtcgc gtgctcttca ccaaggcgca gacctacgaa 1621 ttggagcgtc gtttccgcca gcagcgctac ttgagtgccc cggaaaggga gcatttggcc 1681 agtttgatac gcctgacgcc gacgcaggtg aagatctggt tccagaatca tcgctacaag 1741 acgaagaggg cccagaacga gaagggctat gaggggcatc cgggtttgct tcatggtcat 1801 gccacacatc cgcatcatcc aagcgccttg ccatcgccgc gtcgcgtcgc cgttcctgtg 1861 ctggtgagga atggcaaacc atgtctgggt gatggctcca agctgggtgc cgattgtgtt 1921 tccgtctcat cagtggccac cgccacggcc atgcaaaatg cagcggccgc tcatcatttg 1981 gtcgcactga acggggcagc cgcctatcaa catgccgccg cagcggccgc cggtcttcat 2041 gcccacgccc atgcccatgc cgcccatgct cacgcccacg gccacgccca tccgcatgcc 2101 catgcccaac gggcggcctg gtggccctaa tattgctagg atctgatcga atagatgaac 2161 cccaaaccga acccttggtg caataatcaa ccatcaaaga ccaggccccc aagaaacccg 2221 gagaagccaa aaataaaata aaataaaata aaacgaagga aataaaataa taattgatac 2281 atgcataaag atcacaacta atttatagtc tcacagattc caacttgagt cattcctgta 2341 cataagttag tcccaaaaac tatataatat atatatatac taaacatagt ccacttagtc 2401 aggggttacc tctatatata aacataaaac ccccaatcct gatcaagaca aaaaatgccc 2461 atgacaaagg aaaactatat atctagtatc tcttgtcatg gggcatttaa gtcccataaa 2521 ataactcccc catttttact gcactaaagt tgataatact tataaaaatc tagagttaga 2581 caacaatttt ttttattttt tttctacacc taagtcgaaa cttaatacaa aaattctgta 2641 aatattaaac caaaaaaaaa agaacttaag taaataggat tattccaaaa aagaaaaact 2701 tataaacggc aatgcaacta aacctgtact atatatacat aaatattata tttaaagcaa 2761 gcgtaattag tgttcaaatt ttttagacag aatttaatga ccccccattt ttttttttgt 2821 atgaatacat atataatata gacacttagt cctaaccgat attttttttc gtgtgtgtgc 2881 gtgtatagcg tgtaaaagaa aaaactcttt gaatttatag caagtaatga gttcataaat 2941 gttaacaaaa gacagagacg gcaagtgtat tcaagacaga aagcaaagcg aagcaacact 3001 acaaactgca aaatacattt