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LOCUS XM_017142768 6040 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_017142768 VERSION XM_017142768.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142768.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6040 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6040 /gene="Ulp1" /note="Ulp1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058181" CDS 165..5690 /gene="Ulp1" /codon_start=1 /product="interaptin isoform X2" /protein_id="XP_016998257.3" /db_xref="GeneID:108058181" /translation="MSKSSEEAVVTDSASASTSASASRDGVNGSSVDHQGNSPPFGAP GSQADSGYAGNSSTNQSHYYHHHHFQGAAAFESPAFLPVSPSRGKFWAPGAVRIPNAE PFFASPKRSCLTPSSLSLSSQHSSPRLEELRSSTPVTSPQRVRGHSVSTWNQTANSDG PQLAPRLHAQTPSAEEFELLSEEQRQVYQVGEPTSYRQLALREFEEVNERVAEQLLQE RQLAAARIQQRNQRIATQIQPEEVRDQKLQVLGEIEQTKELVLQETQPIVARNQDLNE QIVVEIQEIQQIPQEIQQEALVTEISAIEQREEQVVVVVLQEDQNIATEIQDLNEPTI LSQIVQETQLIADKILQEDHNIASQIPQEEIEAATEVSSQFEPAKVQPILSENPDINE QIVVEIQEKQNQEEDQKILQANIPIATEVSEFIQNIVAQIPQEDIQIATEVLNEFERA EEQEDPKIATVNQDIQEQIVVEIQDEPNVSHVPQESEQIATEILQEDQLIASPTQEEN VPTVTEILQEDHGIVAETQDINEQIVIETEDQPIVSQIPLQILSDLEPTEEQVAVQFP QEDQDIATEIQDISERLVVEIQNEPIVPQVAEEKQPSLQETQLIASPIQQEDQEILQA DIPIVTEQIQIETEVKVQNHQVLNDLEQAEEQKEPKIVAENQDIHEQTVIEIQDEPIV SHDPQSLIQQEDIPTVTEEDRNIVTETQDLNEQIVIEIEDEPIVSQLPQENHLSASES QDQNTPILEEFKQAEDQVAAQIPEEAIQIVTEIQSISNELQQEDEQLTVQEEVEEEIQ FVTEVQDHSQSILVLEEEDNDQIAPGILQETQIIAAQLQPEDVQIVAEIEVHNDQILR EFEQKEGYNNQKEDIKIAAEIQEQNHQILREFQQEEDQTAAHIQQNSQEIVTDPHNHI DQSGIEVEDLREDQNQTFFSEFQQEDQQIPVQKEPHFASEVHYFEHKLKSQIESEIQY YQPAIQYYQQDSRIPVGPVEIRYYNQEPFGLLEFENQLYQPDLEELANHTAGQSPAEA GQEQQQLASEAKTQTEQNPESNEATELHPYTECVRKLLELIGEACDSLKAHPEHFQAA GYRLALLQLRQKLANVCHQLVEEAIRGESTKQSVVLLREIFLGIEETELPKQRATGQR DELQNGISMGLEILKRLRQLVTGWYKPKEEESDSGEAETGRNRAADSANSTWKRRHQE ENTRPIKYRRVDNSFPRFITNEPAAEDLIPSKSMAERERENQQQQQHQQQQGSKRLSI FNPPVYTQHRVRNEAPYIPNPFDVSDDDEPAQRFANAAGPSARHPQLLYSDAVRLGQN GFVGEARVNGHASRRAPAQAEKSILTHEMERMEHEQYMNLIHTVTHNDSVASRFAKPN PPPLQRIDAQPATWSSMLHNNQSRSLQQHQQQPSSSSSRRPDNRGLSDYARLIRSSSS SSQAERQKPSPAPTPPPQLMRIGSFNNSRASTLSSSSGSSESSNSGSSDSLVMVTAAD DGSNERKAANTMTNHTDAAKSPSGQTPSRLAVTDALQRRFASCIYLKDDFVEQFKAKS ARIQEETEHRRKLAVVEAKRTTEERRDYEYKLRENIFQYRILHKPIFVIGSVDKPASQ PKETKIIPLTKEHIRRYNELMTGEVSTVLVVKFNMHITRRDIRTMLDGEWLNDEVINF YMNLMTERSEKRPGELPATYAMNTFFVPRLLQAGHAGVKRWTRKVDIFSKDVIPVPVH VNGVHWCMAIIHMRNKTIHYYDSMGQPNQPVLNALEAYLREESLDKRKQPFDTSVFKI ESAPNVPQQQNGSDCGVFSCMFAEYISRDVPITFCQTEMEYFRRKMVLEIAAGEIWN" misc_feature <1125..1721 /gene="Ulp1" /note="Ring-infected erythrocyte surface antigen; Provisional; Region: PTZ00341" /db_xref="CDD:173534" misc_feature <1440..1979 /gene="Ulp1" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature <1791..2273 /gene="Ulp1" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature 5139..5666 /gene="Ulp1" /note="Ulp1 protease family, C-terminal catalytic domain; Region: Peptidase_C48; pfam02902" /db_xref="CDD:397169" polyA_site 6040 /gene="Ulp1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtacggtcac actggaggca gcacgccaag aaaattgaaa atttctttct ttttcacaat 61 tttccacacg ccgcgttgca aattttccgc tttgccggca ttggaaaagt gtttaccggc 121 tggccaagag ctcagaacca gcggcagaag aaacgcgaag acgcatgtcg aagtcttccg 181 aagaagccgt tgtgaccgat tcagcatccg catccacatc cgcctccgca tcccgcgatg 241 gagtcaatgg ttcgtctgta gaccaccaag gaaactcgcc gccattcggg gctcctggtt 301 cgcaagcgga ttcgggctac gccggcaata gtagtacgaa tcagagccac tactaccacc 361 accaccactt ccagggagca gccgcattcg agagcccggc cttcttgccc gtatcgccgt 421 cgaggggcaa gttctgggca cctggagccg tgcggatacc gaatgcggag ccgttcttcg 481 cctcgccaaa gaggtcttgt ctcacgccgt cgtcgttgtc gttgtcgtcc cagcactcca 541 gtccgcggct cgaggagctg cgcagctcca cgccagtgac gtcgccgcag agagtgcgtg 601 gccacagcgt ttccacctgg aaccagactg cgaactcgga cggacctcag ttggcgccca 661 ggctgcacgc gcagacgccc tcggccgagg aattcgagct gctgtcggag gagcagcggc 721 aagtctatca ggtcggcgag ccaaccagct accggcaact ggccttgcgg gagttcgagg 781 aggtgaacga gcgggtggcc gagcagctgc tgcaggaaag acagctcgct gcagccagga 841 ttcagcagcg aaaccagaga attgcaaccc agattcagcc ggaagaggtc cgggatcaaa 901 aactacaggt tttaggtgag attgagcaaa cgaaagagct ggtcttgcag gaaacccagc 961 caattgtagc caggaatcaa gacctcaatg agcagatcgt agttgagata caggagatac 1021 agcagattcc acaggaaatc caacaggaag cccttgtaac tgagataagc gcgatcgagc 1081 aaagagaaga gcaggtcgtg gttgtagtcc tgcaggaaga ccaaaacatt gcaactgaga 1141 ttcaagatct caacgaaccg actattctat ctcagattgt gcaagaaacc caactgattg 1201 cggacaagat cctgcaagaa gaccataata ttgcatccca gattccacag gaagaaattg 1261 aggctgcaac tgaggtttca agccagtttg agccagcaaa agtccagcca attctgtctg 1321 aaaatccaga tatcaatgag cagatcgtag ttgagataca ggaaaagcaa aaccaggagg 1381 aagaccagaa gattctgcaa gcaaacatac cgattgcaac tgaggtaagc gagttcattc 1441 agaatattgt agcccagatt ccgcaagagg acattcagat tgcaactgag gttttaaacg 1501 agttcgagcg agcagaagag caggaagacc cgaaaattgc aactgttaat caagatatcc 1561 aagagcaaat tgtagttgag atacaagacg agccaaacgt atcgcacgtt ccacaggaaa 1621 gcgagcagat tgccacagag atcctgcagg aagatcagct gattgcttca ccaacccagg 1681 aggaaaacgt accgactgta actgagatcc tgcaggaaga ccacggcatt gtagctgaga 1741 ctcaggatat caacgaacaa attgtaattg agacagagga ccagccgatt gtatcgcaga 1801 ttccgctgca aattttaagc gatttggagc caactgaaga gcaggttgca gtccaattcc 1861 cgcaggaaga ccaagatatt gcaactgaga ttcaagatat cagtgagcgg cttgtagttg 1921 agatacagaa cgagccgatt gtgccgcagg ttgcagagga aaagcagccg agcctgcagg 1981 aaacccagtt gattgcttcc ccaatccagc aggaagatca ggagattctg caagcagata 2041 taccgattgt aactgaacaa attcagattg aaactgaggt aaaggttcaa aaccaccagg 2101 ttttaaacga tttggagcaa gcagaagagc agaaagagcc gaaaattgta gctgagaatc 2161 aagatatcca tgagcaaact gtaattgaga tacaggacga gccaattgta tcgcacgatc 2221 cacaatccct aattcagcag gaagacatac cgacggtaac tgaagaagac cgaaacattg 2281 taactgagac ccaagatctc aatgaacaaa ttgtaattga gattgaggac gagccgattg 2341 tatcgcagct tccgcaggaa aaccacttga gtgcatctga gagtcaggat caaaacacgc 2401 cgattttgga ggagttcaaa caggcggaag atcaggttgc agcccagatt ccggaggaag 2461 ctattcaaat tgtaaccgaa attcaatcga tttcgaacga gttacaacag gaagacgagc 2521 agcttacagt ccaggaggaa gtggaggaag aaattcagtt tgtgactgaa gttcaggatc 2581 acagccagtc gattttggtt cttgaggagg aggacaacga ccagattgca ccagggatcc 2641 tccaggaaac ccaaattata gcagctcagc tccagccgga agatgtgcag attgtagctg 2701 agatcgaggt gcataacgac cagattttaa gagagtttga acagaaagaa gggtataaca 2761 accagaagga agacatcaag attgcagctg agattcagga acaaaaccac cagattctac 2821 gagagtttca gcaggaagaa gaccagactg cagcccatat tcagcagaat agccaggaga 2881 tcgtaactga ccctcacaat cacatcgacc agagtggaat tgaggtggaa gacctgcggg 2941 aagatcaaaa ccaaacgttt ttcagcgaat ttcagcagga agatcagcag attccagtac 3001 agaaggagcc acacttcgcc tctgaggtgc actactttga gcacaaactg aagagtcaga 3061 tagaatccga gattcagtac tatcagcccg ccatccagta ctatcagcag gattcgagga 3121 ttccggtggg accggtggag attcgctact acaaccagga gccgttcggc ctgctggaat 3181 tcgagaacca gttgtaccag cccgacttgg aggagctggc caaccacacg gctggccaat 3241 ctccggctga agctggtcag gagcagcagc agctggcctc cgaggcaaag acccaaacgg 3301 aacaaaaccc agagtcaaac gaagctaccg aactacatcc ttacaccgag tgcgtgcgca 3361 aactccttga gctcatcggc gaggcctgcg atagtttgaa agcccatccg gagcacttcc 3421 aagccgccgg ctatcgcttg gccctattgc aattgcgcca gaagctggcc aatgtgtgcc 3481 accagctggt agaggaagcc attcgcggag aatccaccaa gcagagcgtc gtcctgctca 3541 gggaaatctt tctgggcatc gaggagactg agcttccgaa gcagagggcc accgggcaaa 3601 gagacgagct ccaaaacgga atttcgatgg gcttggaaat tttgaagaga ctaagacagt 3661 tagttaccgg ttggtataag cccaaggaag aggaatcgga cagcggggag gcggaaacgg 3721 gtcgaaaccg agctgctgat tcagctaatt caacctggaa aagacgccac caggaggaga 3781 atacacggcc gatcaagtac cggcgggtgg acaactcctt tccccgcttc ataacgaatg 3841 agccagccgc cgaggacctg atacccagca agtccatggc cgagcgggag cgcgagaatc 3901 aacagcaaca gcagcatcag cagcagcagg gctcgaagcg gctctcgata ttcaatccgc 3961 ctgtatacac gcagcaccgt gtgcgcaatg aagcccccta catacccaat cccttcgacg 4021 tctcggacga tgatgagcct gcccagagat ttgccaacgc cgctggtcca tcggccagac 4081 acccccagct gctctactcg gatgccgtgc gtctgggtca gaatggcttc gtcggcgagg 4141 cccgtgtaaa cggtcatgcg agccgcagag ctcccgctca ggcggagaag agcatcctca 4201 cccacgagat ggagcgcatg gagcacgaac agtatatgaa cctcatacac acggtgaccc 4261 acaatgattc cgtggccagt cgcttcgcca agccgaatcc accgccgctg cagcgcattg 4321 acgcccagcc ggccacctgg agttccatgc tgcacaacaa ccaatctcgt tcgttgcagc 4381 agcatcagca gcaaccgtcg tcgtcttctt cgaggcgccc cgataaccgc ggcctctccg 4441 actacgccag actgatcaga agcagcagta gcagcagcca ggcagagcgg caaaagccgt 4501 cgccagcacc aacaccgccg ccgcagctaa tgcgcattgg tagcttcaac aacagccgtg 4561 cctccaccct ctccagcagc tcgggaagca gcgaaagctc aaacagcggc tcctccgatt 4621 ccttggtgat ggtcacagcc gcagatgatg gctcgaatga aaggaaggcc gccaacacga 4681 tgaccaacca cactgacgct gcgaaatcgc ccagtggcca gacgccttcc aggctcgctg 4741 tgaccgatgc cctgcaacgt cgcttcgcca gctgcatcta cctcaaggat gacttcgtgg 4801 agcagttcaa ggccaagtcg gctcgcatcc aggaggaaac cgagcaccgt cgtaaattgg 4861 ccgtcgtgga ggctaaacgc accacagagg aacgacgtga ctacgagtat aaactgcggg 4921 agaacatctt ccagtaccgc atcctccaca agccgatctt cgtcatcgga tcggtggaca 4981 agccggcttc tcaaccgaag gaaaccaaaa tcattccgct taccaaggag cacataaggc 5041 gctataacga gttgatgacg ggcgaagtat cgacggttct tgttgtcaag ttcaacatgc 5101 acatcacccg ccgcgacatt cggacaatgc tggatggcga gtggctgaac gacgaggtga 5161 ttaacttcta catgaacttg atgaccgaac gctcggagaa gcgtcctggc gaactgcccg 5221 ccacgtacgc gatgaacaca ttcttcgtgc cgcgccttct gcaggctgga catgcgggcg 5281 taaagcgctg gacccgcaag gtcgatatct tctccaagga cgtcattccg gtgccggtgc 5341 acgtcaacgg cgtccactgg tgcatggcca tcatccacat gcgcaacaag acgattcact 5401 attacgattc catgggacag ccgaatcagc ccgtgctgaa cgctctggag gcctatctgc 5461 gcgaggagtc cttggacaag cgcaagcagc ccttcgatac gagcgtcttc aagatcgaga 5521 gcgcacccaa tgtgccgcaa caacagaatg gcagcgattg cggcgttttt agctgcatgt 5581 tcgccgaata catttcgcgc gatgtcccga tcaccttttg ccaaacggaa atggagtatt 5641 tccgcaggaa gatggtgctg gagattgcgg ctggtgagat ttggaactaa ggagatagtg 5701 tcggtcatcc acacagcaac tagttctagc ttaggagaag atcggaggga gatcgaagct 5761 cttaatttat tttttagtaa tctaacaaca actttccaag cagggaaacg cagttccagt 5821 ccagttcgac ccccggcatg cgtttccctg ttctcatctc attttacctt cgtacacaaa 5881 agacaatggc gaccctttat ggttcgattg tacacacgaa agcatcaacc atctactact 5941 aaatgtaaaa gttttaaata tcagatgaaa aaggagaatt tagccatctg attgtaacag 6001 agaaattagt ttttcaataa agcgctataa agaaacaaga