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LOCUS XM_017142738 4463 bp mRNA linear INV 09-DEC-2024 transcript variant X9, mRNA. ACCESSION XM_017142738 VERSION XM_017142738.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142738.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4463 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4463 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3151 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X7" /protein_id="XP_016998227.2" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKRLEESHREKVTRVMKDWSDLE EKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQR KREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEA AASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSL GMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKV DDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVTAANL NLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQV QHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQHAHAAKEGR NVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPIVQEEKIVP NMQINGYENPTYKYFEVKE" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2125 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2279..>2395 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2990..3139 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4463 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaacgcc ttgaggaatc gcatcgcgag aaggtcacgc gcgtgatgaa 1681 ggactggtcg gatctggagg agaagtacca ggatatgcgc ttggcggacc ccaaggcagc 1741 ccaatccttt aagcagcgga tgacggctcg cttccagact tctgttcagg cactcgagga 1801 agaaggcaac gccgagaagc accagctggc cgccatgcac cagcagcgcg ttttggccca 1861 catcaaccag cggaagcggg aggccatgac ctgctacacc caggccctca ccgaacagcc 1921 cccgaacgcc caccatgttg agaagtgcct gcaaaagttg ctgcgcgccc tgcacaagga 1981 ccgtgcccat gctctggccc actaccgcca cctgttgaac tctggaggac ccggtggcct 2041 ggaggcggct gcctcggagc gaccacgcac tctggagcgc ctgatcgaca tcgatcgtgc 2101 tgtcaatcag tcgatgacca tgctcaagcg ctacccggag ctatcggcca agattgccca 2161 gctgatgaac gattatattt tggcattgcg cagcaaggac gacattcccg gctcgtcgct 2221 gggcatgagc gaggaggcgg aggccggcat tctggacaag taccgcatcg agatcgagcg 2281 caaggtggcc gagaaggagc gactccggct ggccgaaaag cagcgcaagg agcagcgggc 2341 cgccgagcgg gagaaattgc gcgaggagaa gctgcgtatg gaggccaaga aggtggacga 2401 catgctcaag tcgcaggcgg ccgaacagca gcagcaatcg cagcagcagc agcagcagtc 2461 caatgcccag tcgtcgaccc aatcgcaggc gcaacagcag cagcaggaga agagcctcag 2521 cagcaaggag ctgggtctcg atggcggatt ggtcacagcg gccaatctta acttggacac 2581 caccaagagc gagaaggagc tgtcggatac cgagtacgcc gaggcaacag taagcagcac 2641 caaggtgcag accgtgctgc caacggtcga cgatgatgcc gtccagcggg cggtggagga 2701 tgtggccgct gccgttgctc accaggaggc cgagccgcag gtgcagcact tcatgaccca 2761 cgatctgggc caccgcgaat cggtatttga gctgcggcgc caactcgtac cgcatttgcc 2821 taaagcctat cccctctctc tctctcccct ctcgttgcag agcttctcgc tgcgtcgcga 2881 gttcgcgcag catgcgcacg cggccaagga gggccgcaat gtctacttca cgctctcctt 2941 cgccggcatc gccctcatgg cggccgtctt tgtgggcgtg gccgtggcca aatggcggac 3001 atcgcgctcg ccgcacgccc agggcttcat tgaggtcgat cagaacgtga ccacacacca 3061 tcccatcgtc caggaggaga agatcgtgcc caacatgcag atcaatgggt acgagaatcc 3121 gacctacaaa tatttcgaag tgaaagagta agcgggacgg caagaggagc gcggctggct 3181 agagcgagag cgagaacgag aacgccgagc gagcgagagg cacacatcaa cagcaaaagc 3241 agaagaaaca gcagcagcag caaccacaat ttcaaaatga agaaacttaa gcataatatt 3301 aaaaagcaga tgggaagaga aatgattttt tttttcgtca aaaaaggagc gcagttccaa 3361 taaggagaaa cgaggggtag aagaagaaag ataaattcaa tgaatggtaa tatatctata 3421 tattaaatta aagcaagcaa gcagaaaggc aagaatataa agcaagcaat taaatttaag 3481 tatttgaatg tttaacaaaa tgcagtaaac atcctttcta gctctctatc tctctctctc 3541 tctcggtctt actcaaccac tctgtccctt tcccacacac acacataact cattacattc 3601 ccactttgtg gttcttgttg ggcgccaaat aaaaagagag caaaagaact aatagccaaa 3661 gaggcaagcg aaaatccgtg caaaggaaag tcggataaaa agattgaaag taaaagcata 3721 aagccaagga caagaatcac acacacccac acacaaaagg aaaggaggag caggcggagg 3781 aggtggagaa agaaaagaga gcagaagaaa agcaaatgca aaacaaaaga tattcctagt 3841 aaataaattg tcagcacaca gacacacatt cacatacacc gactcactca tagatacagg 3901 aacagtcaca cacacacaca cacaaccaca cacgcattca tggctgcttc gtagcatact 3961 tttgagcgtt tcgtggcgtt gaaatgcttg caagccgatc gcaattctta ccgacaaaaa 4021 aacttacgcc attaattaga gccgcgctaa aagctaaaag aagatgaaag ctgaaacaca 4081 gatacacaca ctcacactga gacacacatg tgaacctaag agctacctac gcgtactaat 4141 ctctatacga acatgcatat gcgcttatgt atatgtctaa ctctctctct aaaccacact 4201 cacactcaca cacacacacg aaaacaccca gacaaacgca aagaaagcaa ctgcaaaaac 4261 ccaacaaatt atatatacac atatatatat atatatacaa tatatttaaa gcaaagcaag 4321 aagaaatgtc cataaatgta tttatgtatc tatacacgag ccacacaacc caaaaaggtc 4381 gaaggtcagc cagctaaggg gagcaggaga attacgatgc ttggcaggct atgaaattaa 4441 tatatgaatc agctacgtaa aca