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LOCUS XM_017142736 4475 bp mRNA linear INV 09-DEC-2024 transcript variant X7, mRNA. ACCESSION XM_017142736 VERSION XM_017142736.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142736.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4475 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4475 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3163 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X5" /protein_id="XP_016998225.2" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDW SDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAH INQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPG GLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIP GSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRME AKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDGGLVT AANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEA EPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQHAHAA KEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPIVQEE KIVPNMQINGYENPTYKYFEVKE" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2137 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2291..>2407 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3002..3151 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4475 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaagtaa gtcagaaacg ccttgaggaa tcgcatcgcg agaaggtcac 1681 gcgcgtgatg aaggactggt cggatctgga ggagaagtac caggatatgc gcttggcgga 1741 ccccaaggca gcccaatcct ttaagcagcg gatgacggct cgcttccaga cttctgttca 1801 ggcactcgag gaagaaggca acgccgagaa gcaccagctg gccgccatgc accagcagcg 1861 cgttttggcc cacatcaacc agcggaagcg ggaggccatg acctgctaca cccaggccct 1921 caccgaacag cccccgaacg cccaccatgt tgagaagtgc ctgcaaaagt tgctgcgcgc 1981 cctgcacaag gaccgtgccc atgctctggc ccactaccgc cacctgttga actctggagg 2041 acccggtggc ctggaggcgg ctgcctcgga gcgaccacgc actctggagc gcctgatcga 2101 catcgatcgt gctgtcaatc agtcgatgac catgctcaag cgctacccgg agctatcggc 2161 caagattgcc cagctgatga acgattatat tttggcattg cgcagcaagg acgacattcc 2221 cggctcgtcg ctgggcatga gcgaggaggc ggaggccggc attctggaca agtaccgcat 2281 cgagatcgag cgcaaggtgg ccgagaagga gcgactccgg ctggccgaaa agcagcgcaa 2341 ggagcagcgg gccgccgagc gggagaaatt gcgcgaggag aagctgcgta tggaggccaa 2401 gaaggtggac gacatgctca agtcgcaggc ggccgaacag cagcagcaat cgcagcagca 2461 gcagcagcag tccaatgccc agtcgtcgac ccaatcgcag gcgcaacagc agcagcagga 2521 gaagagcctc agcagcaagg agctgggtct cgatggcgga ttggtcacag cggccaatct 2581 taacttggac accaccaaga gcgagaagga gctgtcggat accgagtacg ccgaggcaac 2641 agtaagcagc accaaggtgc agaccgtgct gccaacggtc gacgatgatg ccgtccagcg 2701 ggcggtggag gatgtggccg ctgccgttgc tcaccaggag gccgagccgc aggtgcagca 2761 cttcatgacc cacgatctgg gccaccgcga atcggtattt gagctgcggc gccaactcgt 2821 accgcatttg cctaaagcct atcccctctc tctctctccc ctctcgttgc agagcttctc 2881 gctgcgtcgc gagttcgcgc agcatgcgca cgcggccaag gagggccgca atgtctactt 2941 cacgctctcc ttcgccggca tcgccctcat ggcggccgtc tttgtgggcg tggccgtggc 3001 caaatggcgg acatcgcgct cgccgcacgc ccagggcttc attgaggtcg atcagaacgt 3061 gaccacacac catcccatcg tccaggagga gaagatcgtg cccaacatgc agatcaatgg 3121 gtacgagaat ccgacctaca aatatttcga agtgaaagag taagcgggac ggcaagagga 3181 gcgcggctgg ctagagcgag agcgagaacg agaacgccga gcgagcgaga ggcacacatc 3241 aacagcaaaa gcagaagaaa cagcagcagc agcaaccaca atttcaaaat gaagaaactt 3301 aagcataata ttaaaaagca gatgggaaga gaaatgattt tttttttcgt caaaaaagga 3361 gcgcagttcc aataaggaga aacgaggggt agaagaagaa agataaattc aatgaatggt 3421 aatatatcta tatattaaat taaagcaagc aagcagaaag gcaagaatat aaagcaagca 3481 attaaattta agtatttgaa tgtttaacaa aatgcagtaa acatcctttc tagctctcta 3541 tctctctctc tctctcggtc ttactcaacc actctgtccc tttcccacac acacacataa 3601 ctcattacat tcccactttg tggttcttgt tgggcgccaa ataaaaagag agcaaaagaa 3661 ctaatagcca aagaggcaag cgaaaatccg tgcaaaggaa agtcggataa aaagattgaa 3721 agtaaaagca taaagccaag gacaagaatc acacacaccc acacacaaaa ggaaaggagg 3781 agcaggcgga ggaggtggag aaagaaaaga gagcagaaga aaagcaaatg caaaacaaaa 3841 gatattccta gtaaataaat tgtcagcaca cagacacaca ttcacataca ccgactcact 3901 catagataca ggaacagtca cacacacaca cacacaacca cacacgcatt catggctgct 3961 tcgtagcata cttttgagcg tttcgtggcg ttgaaatgct tgcaagccga tcgcaattct 4021 taccgacaaa aaaacttacg ccattaatta gagccgcgct aaaagctaaa agaagatgaa 4081 agctgaaaca cagatacaca cactcacact gagacacaca tgtgaaccta agagctacct 4141 acgcgtacta atctctatac gaacatgcat atgcgcttat gtatatgtct aactctctct 4201 ctaaaccaca ctcacactca cacacacaca cgaaaacacc cagacaaacg caaagaaagc 4261 aactgcaaaa acccaacaaa ttatatatac acatatatat atatatatac aatatattta 4321 aagcaaagca agaagaaatg tccataaatg tatttatgta tctatacacg agccacacaa 4381 cccaaaaagg tcgaaggtca gccagctaag gggagcagga gaattacgat gcttggcagg 4441 ctatgaaatt aatatatgaa tcagctacgt aaaca