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LOCUS XM_017142733 4484 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_017142733 VERSION XM_017142733.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142733.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4484 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4484 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3172 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X2" /protein_id="XP_016998222.2" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQR VLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNS GGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSK DDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEK LRMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDG GLVTAANLNLDTTKSEKELSDTEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAH QEAEPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQHA HAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPIV QEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2149 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2303..>2419 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3011..3160 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4484 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaagtaa gtcagaaaga agcccaacag cgccttgagg aatcgcatcg 1681 cgagaaggtc acgcgcgtga tgaaggactg gtcggatctg gaggagaagt accaggatat 1741 gcgcttggcg gaccccaagg cagcccaatc ctttaagcag cggatgacgg ctcgcttcca 1801 gacttctgtt caggcactcg aggaagaagg caacgccgag aagcaccagc tggccgccat 1861 gcaccagcag cgcgttttgg cccacatcaa ccagcggaag cgggaggcca tgacctgcta 1921 cacccaggcc ctcaccgaac agcccccgaa cgcccaccat gttgagaagt gcctgcaaaa 1981 gttgctgcgc gccctgcaca aggaccgtgc ccatgctctg gcccactacc gccacctgtt 2041 gaactctgga ggacccggtg gcctggaggc ggctgcctcg gagcgaccac gcactctgga 2101 gcgcctgatc gacatcgatc gtgctgtcaa tcagtcgatg accatgctca agcgctaccc 2161 ggagctatcg gccaagattg cccagctgat gaacgattat attttggcat tgcgcagcaa 2221 ggacgacatt cccggctcgt cgctgggcat gagcgaggag gcggaggccg gcattctgga 2281 caagtaccgc atcgagatcg agcgcaaggt ggccgagaag gagcgactcc ggctggccga 2341 aaagcagcgc aaggagcagc gggccgccga gcgggagaaa ttgcgcgagg agaagctgcg 2401 tatggaggcc aagaaggtgg acgacatgct caagtcgcag gcggccgaac agcagcagca 2461 atcgcagcag cagcagcagc agtccaatgc ccagtcgtcg acccaatcgc aggcgcaaca 2521 gcagcagcag gagaagagcc tcagcagcaa ggagctgggt ctcgatggcg gattggtcac 2581 agcggccaat cttaacttgg acaccaccaa gagcgagaag gagctgtcgg ataccgagta 2641 cgccgaggca acagtaagca ccaaggtgca gaccgtgctg ccaacggtcg acgatgatgc 2701 cgtccagcgg gcggtggagg atgtggccgc tgccgttgct caccaggagg ccgagccgca 2761 ggtgcagcac ttcatgaccc acgatctggg ccaccgcgaa tcggtatttg agctgcggcg 2821 ccaactcgta ccgcatttgc ctaaagccta tcccctctct ctctctcccc tctcgttgca 2881 gagcttctcg ctgcgtcgcg agttcgcgca gcatgcgcac gcggccaagg agggccgcaa 2941 tgtctacttc acgctctcct tcgccggcat cgccctcatg gcggccgtct ttgtgggcgt 3001 ggccgtggcc aaatggcgga catcgcgctc gccgcacgcc cagggcttca ttgaggtcga 3061 tcagaacgtg accacacacc atcccatcgt ccaggaggag aagatcgtgc ccaacatgca 3121 gatcaatggg tacgagaatc cgacctacaa atatttcgaa gtgaaagagt aagcgggacg 3181 gcaagaggag cgcggctggc tagagcgaga gcgagaacga gaacgccgag cgagcgagag 3241 gcacacatca acagcaaaag cagaagaaac agcagcagca gcaaccacaa tttcaaaatg 3301 aagaaactta agcataatat taaaaagcag atgggaagag aaatgatttt ttttttcgtc 3361 aaaaaaggag cgcagttcca ataaggagaa acgaggggta gaagaagaaa gataaattca 3421 atgaatggta atatatctat atattaaatt aaagcaagca agcagaaagg caagaatata 3481 aagcaagcaa ttaaatttaa gtatttgaat gtttaacaaa atgcagtaaa catcctttct 3541 agctctctat ctctctctct ctctcggtct tactcaacca ctctgtccct ttcccacaca 3601 cacacataac tcattacatt cccactttgt ggttcttgtt gggcgccaaa taaaaagaga 3661 gcaaaagaac taatagccaa agaggcaagc gaaaatccgt gcaaaggaaa gtcggataaa 3721 aagattgaaa gtaaaagcat aaagccaagg acaagaatca cacacaccca cacacaaaag 3781 gaaaggagga gcaggcggag gaggtggaga aagaaaagag agcagaagaa aagcaaatgc 3841 aaaacaaaag atattcctag taaataaatt gtcagcacac agacacacat tcacatacac 3901 cgactcactc atagatacag gaacagtcac acacacacac acacaaccac acacgcattc 3961 atggctgctt cgtagcatac ttttgagcgt ttcgtggcgt tgaaatgctt gcaagccgat 4021 cgcaattctt accgacaaaa aaacttacgc cattaattag agccgcgcta aaagctaaaa 4081 gaagatgaaa gctgaaacac agatacacac actcacactg agacacacat gtgaacctaa 4141 gagctaccta cgcgtactaa tctctatacg aacatgcata tgcgcttatg tatatgtcta 4201 actctctctc taaaccacac tcacactcac acacacacac gaaaacaccc agacaaacgc 4261 aaagaaagca actgcaaaaa cccaacaaat tatatataca catatatata tatatataca 4321 atatatttaa agcaaagcaa gaagaaatgt ccataaatgt atttatgtat ctatacacga 4381 gccacacaac ccaaaaaggt cgaaggtcag ccagctaagg ggagcaggag aattacgatg 4441 cttggcaggc tatgaaatta atatatgaat cagctacgta aaca