Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017142731 4487 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017142731 VERSION XM_017142731.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142731.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4487 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4487 /gene="Appl" /note="amyloid-beta-like protein; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108058164" CDS 350..3175 /gene="Appl" /codon_start=1 /product="amyloid-beta-like protein isoform X1" /protein_id="XP_016998220.2" /db_xref="GeneID:108058164" /translation="MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQ IYQPQYLSEEGRWMTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKI GGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWPFVR WNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKHFKTDEIHVKKTDLPVMP PAQITSANDELMVNDEDDSNDSNYSKDANDDELDDEDDLMGDDEEDEMVADEAAAGGG SPSTGSTGDANSGSLDDINAEYDSGEEGDNYEEDGAGSEGEAEGETSWDQSGGSKVVT LKSGASASVPSSGPVSVSASSEKTPAKSSDLVTSTPQLSAAAAAAAAAAAASVNSGNS GVGSSNGGGGAPPSTAQPTSDPYFTHFDPHYEHQSYKVSQKEAQQRLEESHREKVTRV MKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQR VLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNS GGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSK DDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKERLRLAEKQRKEQRAAEREKLREEK LRMEAKKVDDMLKSQAAEQQQQSQQQQQQSNAQSSTQSQAQQQQQEKSLSSKELGLDG GLVTAANLNLDTTKSEKELSDTEYAEATVSSTKVQTVLPTVDDDAVQRAVEDVAAAVA HQEAEPQVQHFMTHDLGHRESVFELRRQLVPHLPKAYPLSLSPLSLQSFSLRREFAQH AHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNVTTHHPI VQEEKIVPNMQINGYENPTYKYFEVKE" misc_feature 425..946 /gene="Appl" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature <1016..>1435 /gene="Appl" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 1559..2149 /gene="Appl" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2303..>2419 /gene="Appl" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3014..3163 /gene="Appl" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" polyA_site 4487 /gene="Appl" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctgcgacttt cggactgtca ggacattcga tttggaggca acgagtccgc cgagcagcca 61 gcaccactcg cagtcgtttg tgagcgttcg cagcgccagc aaagtgttaa acgaacaagc 121 caacaacaaa ccaaatacaa gttaaccaga aacagagaat ctgaaaacga aatccaaagc 181 taaattgcaa cccagacgag ccgcaaaaag cagcggtaag ttcagagatt cccgtctgag 241 attcgctgag aagcagagca gacaggagcc gagtttggag agacaggaca caaaggagtc 301 ggagtcagag tcacagccaa ggacaaggat ctcaaaagga gtgcgaacaa tgtgcgccgc 361 gctgcgtcgt aatttgttgc tgcggagcct ctgggtcgtc ctggccattg gcaccgctca 421 ggttcaggcc gcctcgccac gatgggagcc ccagatagcc gttctctgcg aggccggaca 481 aatctatcaa ccgcaatatc tttccgagga gggacgctgg atgacggacc tcagcaagaa 541 gacaaccggc gccacatgtt tgcgtgataa aatggatttg cttgattact gcaagaaggc 601 ctatcccaat cgagacatta cgaacattgt cgagtcatcc cactaccaga agatcggcgg 661 ctggtgtcgt cagggtgctc taaatgcggc caagtgcaag ggctcccacc gctggatcaa 721 gccattccgc tgtctcgaag gaccattcca atcggacgcc ctgctggttc ccgagggctg 781 cctcttcgat cacatccaca acgcctcacg ctgctggccc ttcgtgaggt ggaaccaaac 841 cggagcggcc gcttgccagg agcgcggaat gcagatgcgc agcttcgcca tgctcctgcc 901 ctgcggcatc tcggtcttct ccggcgtgga gttcgtctgc tgtcccaagc acttcaagac 961 tgatgaaatc catgtgaaaa agaccgacct gccggtgatg ccaccagccc agatcaccag 1021 tgccaacgac gaactgatgg tgaatgacga ggacgatagc aatgactcga attactcaaa 1081 ggatgccaat gacgacgagc tggacgatga ggatgatctg atgggcgatg atgaggagga 1141 cgagatggtg gcggatgagg cagctgccgg gggaggaagt cccagcaccg gatcgactgg 1201 cgatgcaaat agcggatctc tggatgatat aaatgcggaa tacgatagcg gcgaggaggg 1261 tgacaactac gaggaggatg gagctggttc cgagggcgaa gccgagggtg agacctcctg 1321 ggatcagagc ggaggatcta aggtggtgac cctaaagagt ggtgcctccg cctcggtgcc 1381 gtctagtggt ccggtttcag tttctgcctc atctgaaaag acgcccgcaa aatcctctga 1441 tttggtcacg agcactcctc agctttccgc cgccgccgcc gcagccgccg cagctgctgc 1501 agcatctgtg aactctggaa actcgggagt aggatcttct aacggaggag gaggagcccc 1561 accatccacc gcacagccca cctcggaccc atacttcacc cactttgatc cgcactatga 1621 gcaccagagc tacaaagtaa gtcagaaaga agcccaacag cgccttgagg aatcgcatcg 1681 cgagaaggtc acgcgcgtga tgaaggactg gtcggatctg gaggagaagt accaggatat 1741 gcgcttggcg gaccccaagg cagcccaatc ctttaagcag cggatgacgg ctcgcttcca 1801 gacttctgtt caggcactcg aggaagaagg caacgccgag aagcaccagc tggccgccat 1861 gcaccagcag cgcgttttgg cccacatcaa ccagcggaag cgggaggcca tgacctgcta 1921 cacccaggcc ctcaccgaac agcccccgaa cgcccaccat gttgagaagt gcctgcaaaa 1981 gttgctgcgc gccctgcaca aggaccgtgc ccatgctctg gcccactacc gccacctgtt 2041 gaactctgga ggacccggtg gcctggaggc ggctgcctcg gagcgaccac gcactctgga 2101 gcgcctgatc gacatcgatc gtgctgtcaa tcagtcgatg accatgctca agcgctaccc 2161 ggagctatcg gccaagattg cccagctgat gaacgattat attttggcat tgcgcagcaa 2221 ggacgacatt cccggctcgt cgctgggcat gagcgaggag gcggaggccg gcattctgga 2281 caagtaccgc atcgagatcg agcgcaaggt ggccgagaag gagcgactcc ggctggccga 2341 aaagcagcgc aaggagcagc gggccgccga gcgggagaaa ttgcgcgagg agaagctgcg 2401 tatggaggcc aagaaggtgg acgacatgct caagtcgcag gcggccgaac agcagcagca 2461 atcgcagcag cagcagcagc agtccaatgc ccagtcgtcg acccaatcgc aggcgcaaca 2521 gcagcagcag gagaagagcc tcagcagcaa ggagctgggt ctcgatggcg gattggtcac 2581 agcggccaat cttaacttgg acaccaccaa gagcgagaag gagctgtcgg ataccgagta 2641 cgccgaggca acagtaagca gcaccaaggt gcagaccgtg ctgccaacgg tcgacgatga 2701 tgccgtccag cgggcggtgg aggatgtggc cgctgccgtt gctcaccagg aggccgagcc 2761 gcaggtgcag cacttcatga cccacgatct gggccaccgc gaatcggtat ttgagctgcg 2821 gcgccaactc gtaccgcatt tgcctaaagc ctatcccctc tctctctctc ccctctcgtt 2881 gcagagcttc tcgctgcgtc gcgagttcgc gcagcatgcg cacgcggcca aggagggccg 2941 caatgtctac ttcacgctct ccttcgccgg catcgccctc atggcggccg tctttgtggg 3001 cgtggccgtg gccaaatggc ggacatcgcg ctcgccgcac gcccagggct tcattgaggt 3061 cgatcagaac gtgaccacac accatcccat cgtccaggag gagaagatcg tgcccaacat 3121 gcagatcaat gggtacgaga atccgaccta caaatatttc gaagtgaaag agtaagcggg 3181 acggcaagag gagcgcggct ggctagagcg agagcgagaa cgagaacgcc gagcgagcga 3241 gaggcacaca tcaacagcaa aagcagaaga aacagcagca gcagcaacca caatttcaaa 3301 atgaagaaac ttaagcataa tattaaaaag cagatgggaa gagaaatgat tttttttttc 3361 gtcaaaaaag gagcgcagtt ccaataagga gaaacgaggg gtagaagaag aaagataaat 3421 tcaatgaatg gtaatatatc tatatattaa attaaagcaa gcaagcagaa aggcaagaat 3481 ataaagcaag caattaaatt taagtatttg aatgtttaac aaaatgcagt aaacatcctt 3541 tctagctctc tatctctctc tctctctcgg tcttactcaa ccactctgtc cctttcccac 3601 acacacacat aactcattac attcccactt tgtggttctt gttgggcgcc aaataaaaag 3661 agagcaaaag aactaatagc caaagaggca agcgaaaatc cgtgcaaagg aaagtcggat 3721 aaaaagattg aaagtaaaag cataaagcca aggacaagaa tcacacacac ccacacacaa 3781 aaggaaagga ggagcaggcg gaggaggtgg agaaagaaaa gagagcagaa gaaaagcaaa 3841 tgcaaaacaa aagatattcc tagtaaataa attgtcagca cacagacaca cattcacata 3901 caccgactca ctcatagata caggaacagt cacacacaca cacacacaac cacacacgca 3961 ttcatggctg cttcgtagca tacttttgag cgtttcgtgg cgttgaaatg cttgcaagcc 4021 gatcgcaatt cttaccgaca aaaaaactta cgccattaat tagagccgcg ctaaaagcta 4081 aaagaagatg aaagctgaaa cacagataca cacactcaca ctgagacaca catgtgaacc 4141 taagagctac ctacgcgtac taatctctat acgaacatgc atatgcgctt atgtatatgt 4201 ctaactctct ctctaaacca cactcacact cacacacaca cacgaaaaca cccagacaaa 4261 cgcaaagaaa gcaactgcaa aaacccaaca aattatatat acacatatat atatatatat 4321 acaatatatt taaagcaaag caagaagaaa tgtccataaa tgtatttatg tatctataca 4381 cgagccacac aacccaaaaa ggtcgaaggt cagccagcta aggggagcag gagaattacg 4441 atgcttggca ggctatgaaa ttaatatatg aatcagctac gtaaaca