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LOCUS XM_017142726 7280 bp mRNA linear INV 09-DEC-2024 (elav), transcript variant X2, mRNA. ACCESSION XM_017142726 VERSION XM_017142726.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142726.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7280 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7280 /gene="elav" /note="embryonic lethal abnormal vision; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:108058160" CDS 757..2232 /gene="elav" /codon_start=1 /product="protein elav isoform X2" /protein_id="XP_016998215.2" /db_xref="GeneID:108058160" /translation="MMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVA AAAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQQ QQQQAAAVVQQQQQQQQAAVQQAVVPQPQQAQPNTNGNAGSGAQNGSNGSTETRTNLI VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIF APFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKF SNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGL GAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQC KGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK" misc_feature 1216..2229 /gene="elav" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 7280 /gene="elav" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacatccgct agttttagtt caagcaacag ccgctgtctc tgtcctacac tctctctagc 61 agccgccccc ctctgccgca gcctctgcct tcgccgccct tagagcgttg ccatgtaaat 121 ggcgagccga gagccggctt agggggtggc aatgccatgc gtttaaccct taagcggtgg 181 caagttccgc ttgtacatag aagccgccgt tctgcgtttc gcaaaaggaa atattacaac 241 ttgttcggct aagggtgggt ctgctgccta ttgctcattt ttggtgtttt ttctttctcc 301 agggggttcg agttgatttc tcgcatgtcc tggcccctta agtttaaccc tccgtctgcc 361 gcattacata actgggcggg gtacggcaca gagaaaagag aaaagagaga gagcgctgta 421 acagtttgtc caaaaggaaa cgattgaggg ggaggggcag agagagagca atagcaagag 481 cggctggagc gcaaagcctg gccagaaagt cctgcgctcg cctcagaagc atcctgtgcc 541 tgtgacgcag cggatctggc ctcgcatttc gctctgtaac caaaagctaa actaagccca 601 taactaaagt atattaatcc aaaagcagtg tgaacggata aattcgaaaa gcgcaccgca 661 aaacgagagt accagcaaaa aagcacgcaa atcaccgaca gaggaaaagc aataaattcg 721 ctaaagttca gttcttccag tgccgaagtg gactttatga tggcaaatac cggagccggc 781 ggcggagtgg acacacaggc gcagctaatg cagagtgcag cggcagccgc tgcggtggcg 841 gcaacgaatg ccgcggccgc cccagtacag aatgcggccg ccgtggccgc tgccgcccag 901 ctgcagcagc aacaggtgca gcaggcgatc ctgcaggtgc agcagcagca gacacagcag 961 gcggtggcgg cggcagcggc cgctgttacc cagcagctcc agcagcagca gcaggccgtc 1021 gtggcccaac aggcggtggt gcaacagcag cagcagcagc aacagcaaca gcaggcggcg 1081 gcggtggtgc agcagcagca gcagcagcag caggcggcgg tccaacaggc ggtggtgccc 1141 cagccgcagc aggcgcagcc caataccaat ggcaatgccg gttcgggtgc ccagaacggc 1201 agcaacggca gcacggagac gcgcacaaat ctgattgtca actacttgcc gcaaacgatg 1261 accgaggacg agatccggtc gctcttctcc agcgtcggcg agattgagtc ggtgaagctg 1321 atacgcgaca agtcgcaggt ctacatcgat cccctcaatc cgcaggcgcc cagcaagggc 1381 cagagcctgg gctatggctt cgtcaactat gtccggccgc aggacgccga gcaggctgtc 1441 aatgtgctga acggcctgcg gctgcagaac aagaccatca aggtgtcgtt cgcccggccc 1501 tcgtcggacg ccatcaaggg cgccaatctg tatgtctcgg ggctgccgaa gacgatgacc 1561 cagcaggaac tggaggccat cttcgctccc ttcggggcca tcataacgtc gcgcatcctg 1621 cagaatgccg gcaacgatac gcagacgaag ggcgtcggct tcattcggtt cgacaagcgg 1681 gaggaggcca ccagggccat cattgccctg aacggcacca cgccgtccag ctgcacggac 1741 cccattgtgg tgaagttctc gaatacgccc ggcagcacca gcaagatcat ccagccgcag 1801 ctgcccgctt tcctcaatcc gcagctggtg cgacgcattg gcggcgccat gcacacgccg 1861 gtgaacaagg gactggcccg attctcgccc atggccggcg atatgctcga tgtgatgctc 1921 ccgaatggcc tgggcgcggc ggcggcggcg gccacaacgc tggccagcgg tcccggcggt 1981 gcgtatccca tattcatcta caatctggca cccgaaacgg aggaggctgc gctgtggcag 2041 ctgttcggtc ccttcggggc tgtgcaatcg gtgaagatcg tcaaggatcc cacaacgaac 2101 cagtgcaagg gctatggctt cgtctcgatg accaactacg acgaggcggc catggccatt 2161 cgggcgctca acggctatac catgggcaat cgggtgctgc aggtcagctt taagaccaac 2221 aaggccaagt agattgcagg cggagtggaa gtggatacag attaagatga agatgcagat 2281 gaagcagcac ccccggaaac cattgtcctg aatctaaaca tcctgacaca caaccacaca 2341 caacacacat atataaatat gcatggtata acggtaacta agcgcaacaa aacagtatgt 2401 gtaaaacaca cacgaacaaa aaagaaaaca agaaagcatc aggcaggaga aagtattctc 2461 gaacgacaac gaaacggcgt aaacccaaac ccagaaccct ttttaactac acatagatat 2521 ccccatccaa tccaatccaa tccaaacccc aaaaaaaaac aaaacaaaac cgccggccaa 2581 aagcgttgca atagcaaaat tcttcttgtt tagcatttaa gtaacaaatc attaactaaa 2641 cgaaacaaac aaaagaaggg agctgcctga agttgaggag aagaaaagca ggggagtgag 2701 aatgaaccat gagattataa ggaaaaattg caatattaac aacacactct ggcagctgtg 2761 gaaagaaaga aaggtcaaag gttgccgcag tcaaattagt cgcaaagcaa aacaaagaaa 2821 tcaaccaaac acacaaaaaa aaaacaaagg gaaaaagcaa aaaactatga caaatttaac 2881 tttactagca aaaaaagaaa atgagaaatt ttaaaaattt attaacctta agtaaaacgc 2941 agcaatgaaa tcttccaaac aaatgaaaac aagaaatctg ttagttacac tccaactttt 3001 tctaccataa aaacttcaaa acttgaatct aaaaaagagg ataaggaaaa ggataagaag 3061 aaaaacaaaa acagaattaa gaaattagag gagttcagtg tctaggattt atacaaggtg 3121 gcccgatggg acatcagttt ggcttgatcg aaaacggggg cgggacaaaa agtattcgac 3181 ggggcgatcg agaggatctc gagcatataa tagatatata ttcataacat ggaggctgct 3241 acagtattac aagaaacata aaaacataaa aacaaaagct acatacttaa caaaacgaat 3301 ggcaaacaga gcgcacgttt aataattcta aatatatata tatccgtatg tatatgcgat 3361 aattctatat ctacctagat atacacttaa atatagaaat ttaacgaatt ttttttgtat 3421 gttttgtgtg ttgttttcta cacttagaga acgaaacccg atttgatcaa gccaaactcg 3481 tgccccctga gagcacaact acacacacac agtgaaaact gtaaaaaata tatagaaaac 3541 atatagcaag atcgagggaa agagaaagtt agcgaacgga aaacaaaagt aatacaataa 3601 tttatgcgca aatttgaaac gttttactaa agtaaataat tgttagtgaa tattaatact 3661 gtaattgtgc gcgtgcagcg caggtatata gcttgctatg tacaggcaaa tgctggcgta 3721 ggcacacctt atatacttta tataatgtat agttcaagga gcaagtaagc ataatgaagg 3781 aataacaaaa tacttgctaa accaaaacat ttttagcgtt aaaacaaagc gtagcacaaa 3841 caattactaa aaacaaaaac aaaaaacgaa aaagtaaagc agaaacaacc ttttttatat 3901 gacaacagtt taaaacaaag taaaaaaccg aaaaaaatat gaaatggaaa atatgaatga 3961 ggggcatgag caaaagcatt agcaaagcga tttctctagc caagtaagtt gacaaaggat 4021 aaaggataaa gggaggggcg acttatagac gaggataact cccagcacat cctacatata 4081 taataatacc ccatcaatcc catatcccga cctacaactt ttgtgcaatt tttgcgtttt 4141 ttattagttg aaactcttct gtatatttct ttgcttcttt tgattgttaa agcgagagag 4201 tgagacacac acacataaat atctacatat ataattttga ttctggattc tatattctat 4261 actccgtatt ccgtatttga attaagtttt gtttgatttc tttgtttgct ttgtatacga 4321 attgtatttg aaaataggct cctgcatatc cagtccataa aaccagtcag acccaaccat 4381 gcatatttat acgaatgatt tgtgtttgat ttgtttataa cgtttaacct aagatgacac 4441 acaaccccaa ccgattttga gttctctctc caaatagcat aaattcttaa ccttaactta 4501 agtttcaacc agagcattga acagaaccca aaaagcgaaa tagaaattga tttaactttg 4561 aatattatta cgatacctag cgctatgtgt aatcggatat atattaccgc atatatatat 4621 atctcactaa atataattat ttttttgtat aactataggc caacaaagaa atcttttttg 4681 tttgaacaaa attcgcaaca agaactctag tcagaagatg gaaaagaaga agattacgat 4741 gagggagaaa gaagttttga ggcagccgca catgtaggga ggaaaacata tatagtagat 4801 caaaaccaaa agaactatgg caatttctag gtaataaaac gattgattga agcggcctgc 4861 tctccccttt ccaaagatta agcccctcga aacccataag acgagaaggg agcaaagcaa 4921 agggcaagca cgaagtcaaa gggcaagggg tttcccccta ctttgacttc ctgcttcccc 4981 ggatacattt gcaatacatt atttacaatc tgctagttta tttatacacc cacataagaa 5041 aacacactgt aggacaggaa agcaggaaga aaatcctgtg gaagcgaaga ttatgtactt 5101 gattttgttt aatttgtatt tctgtcatca catactctca cacacgacac acacacacac 5161 atatatatat gtatatgtat atgtatattc aatatttaat ttaattaact aatcctttaa 5221 tatatatata tacttatatt ttttgtcatc gatgatctaa ttaattgtat taattctaat 5281 tcttgtgcaa tagttttaaa atgcaactaa cggcaaaaca acagcaacaa tttttcaagc 5341 atctcaaact ataaattaca aattataatt tcattaagtg aagaagaaaa cgagaaacga 5401 aaaaaatgaa tcttttacga ttatgtgtaa cttaaaagta tcattattct atataccgca 5461 aaacgagaaa gaaaagccaa ccacagcaac tacaaaaaaa tttaacaaaa tatacaatta 5521 ttttttaagc taattcgata tgtatttcga gtacatatat ttatatctca tcatttttct 5581 ttacctattt aagtaagcga agaaccaaga aaacaaacgg aatcgaaaca aaaaacatta 5641 tttattgtat ttttataatt acgtaattta atttaattca atttgaattc aatattcctt 5701 tgattttgag caaagcgaag atgaacaaga agattatgat gaagaattag tctaattata 5761 cacacaacaa aggaacagag agagagagaa aaaaagagtg tctatataat atcgggaatc 5821 tataacttcc cagctctctc tcctcccaat ctccccttct ctcgatatct ctctatttac 5881 ccctatgttt ggtttaattt taattttata ccttgtattt tattttgatt tgatttcgtt 5941 tcaacaaaac cttttatgtt tcagttttag ttttaattta tgattttatg ctatatgcta 6001 tacccatttg atttgtcaca gcaacgagaa cacaacaacc aacccagcgg ttttagttga 6061 tatcttagct atatacgatc tgtgtgtaca tatgttaaca tgtaaaccca cgttagttaa 6121 agattcctgt gaatcctatc gaatgaatat tatgattacg tttattatta tttaatatgc 6181 tttatttcct ttctttgatt ttgtgtattt tgctttttga tcggattatg caacgaatta 6241 tgtttgacaa ttacgatcca ttttaaattt atgtttactc ttatgatttc atttgatttc 6301 cgcaccaaac aagtaaaaaa aaaacacgat gaaaaaaatt tactttcaat aaaaaaaaac 6361 ttgatgaaaa ttttagcatc atttttattt atttgttact ttttggtttt gtttgttttt 6421 taaactgtat tattttccaa ccttgaacta catgttttcc gaatcctgaa atcccaggat 6481 tatctattct ctatctctct ctctcttttt gaacactcaa aaaaaccaga cgatcattga 6541 aagatatagg aatcgatcta gtcaaggccc atctttaaag tggtgccatc ggaatcagtt 6601 gatctcagca aaaagacatt cccaatcgtc ccagttttgg tttagtacta aataccaacc 6661 caatgacatg cattccagtt tttgttgctc ggtttagaga ctctgccagt tgcgatatta 6721 tttgtgtgca aaacgagaat acttttaatt tgtgtaatgc cattatgttt agcgcttata 6781 attaacgaat ctcatagtat agtttagcag aaaaagtaca gtcaccactc cctcgattta 6841 cgtatatgtg ggaacatgtc gcgacatgtt ctgtgtatga ttttgaacct gtatctttgt 6901 attgcttaat tgtgtgtaat ttttgtaatt tttagagcaa agtttatcta tcatttcgat 6961 gggcagagaa caggagatgc ttagcgatag cgttaaacga ttacacaaat gataccgtta 7021 ataatcattg acaacaacaa caaggatata tatacctttc tatatatatt attatgatta 7081 aaacgatgaa gacgacggcg acgagaagga ggaaactatt taatttattt tattaacata 7141 tttatatcga ttaattaatt aattaataat atttatcaca catttcaaat gatatttcaa 7201 aatggaaaac aatacaaaaa aaaaacgaat acaagcaaat gagaaaaaag atattaatat 7261 tataaatgta tttcaaaata