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LOCUS XM_017142725 7060 bp mRNA linear INV 09-DEC-2024 (elav), transcript variant X1, mRNA. ACCESSION XM_017142725 VERSION XM_017142725.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142725.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7060 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7060 /gene="elav" /note="embryonic lethal abnormal vision; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:108058160" CDS 528..2012 /gene="elav" /codon_start=1 /product="protein elav isoform X1" /protein_id="XP_016998214.2" /db_xref="GeneID:108058160" /translation="MDFMMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAA AVAAAAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQ QQQQQQQAAAVVQQQQQQQQAAVQQAVVPQPQQAQPNTNGNAGSGAQNGSNGSTETRT NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF VNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELE AIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIV VKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLP NGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTT NQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK" misc_feature 996..2009 /gene="elav" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 7060 /gene="elav" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttcattat ttcatttcca cgccaaccat cgtgcgccgc agttcgaacg ctcctgccac 61 agcgagagaa gaaaagttag gaaaatcgac taaaccgaaa tcgaaatcca aatctcgtgc 121 ctgtgtgctc ttctgcaatt gattattttt ttctcgaaag cagtgctaaa caagaataac 181 cgttaaacta cagctattgg ccgagtcgag cgaatctcaa tccgaaaata cgacagcaac 241 gacgacgcca gcgtttattt attaacaaaa aacgattaca ctacaacaaa caccaaagtc 301 ctggaccacc ggagagtgtg tgagcgaaaa ggaaagcaag gaagagagag aggaagaaag 361 tgcaaggagg agcgccgtga gagcgcgcgc gcaaggattc cagattccag agagaactta 421 gaaaattaat tcactttgtt tgccagccaa acaaaacagc aacaacaaca accaccacct 481 cccccaaata caacaacaca cacacactag ctctctaaac taaaacaatg gactttatga 541 tggcaaatac cggagccggc ggcggagtgg acacacaggc gcagctaatg cagagtgcag 601 cggcagccgc tgcggtggcg gcaacgaatg ccgcggccgc cccagtacag aatgcggccg 661 ccgtggccgc tgccgcccag ctgcagcagc aacaggtgca gcaggcgatc ctgcaggtgc 721 agcagcagca gacacagcag gcggtggcgg cggcagcggc cgctgttacc cagcagctcc 781 agcagcagca gcaggccgtc gtggcccaac aggcggtggt gcaacagcag cagcagcagc 841 aacagcaaca gcaggcggcg gcggtggtgc agcagcagca gcagcagcag caggcggcgg 901 tccaacaggc ggtggtgccc cagccgcagc aggcgcagcc caataccaat ggcaatgccg 961 gttcgggtgc ccagaacggc agcaacggca gcacggagac gcgcacaaat ctgattgtca 1021 actacttgcc gcaaacgatg accgaggacg agatccggtc gctcttctcc agcgtcggcg 1081 agattgagtc ggtgaagctg atacgcgaca agtcgcaggt ctacatcgat cccctcaatc 1141 cgcaggcgcc cagcaagggc cagagcctgg gctatggctt cgtcaactat gtccggccgc 1201 aggacgccga gcaggctgtc aatgtgctga acggcctgcg gctgcagaac aagaccatca 1261 aggtgtcgtt cgcccggccc tcgtcggacg ccatcaaggg cgccaatctg tatgtctcgg 1321 ggctgccgaa gacgatgacc cagcaggaac tggaggccat cttcgctccc ttcggggcca 1381 tcataacgtc gcgcatcctg cagaatgccg gcaacgatac gcagacgaag ggcgtcggct 1441 tcattcggtt cgacaagcgg gaggaggcca ccagggccat cattgccctg aacggcacca 1501 cgccgtccag ctgcacggac cccattgtgg tgaagttctc gaatacgccc ggcagcacca 1561 gcaagatcat ccagccgcag ctgcccgctt tcctcaatcc gcagctggtg cgacgcattg 1621 gcggcgccat gcacacgccg gtgaacaagg gactggcccg attctcgccc atggccggcg 1681 atatgctcga tgtgatgctc ccgaatggcc tgggcgcggc ggcggcggcg gccacaacgc 1741 tggccagcgg tcccggcggt gcgtatccca tattcatcta caatctggca cccgaaacgg 1801 aggaggctgc gctgtggcag ctgttcggtc ccttcggggc tgtgcaatcg gtgaagatcg 1861 tcaaggatcc cacaacgaac cagtgcaagg gctatggctt cgtctcgatg accaactacg 1921 acgaggcggc catggccatt cgggcgctca acggctatac catgggcaat cgggtgctgc 1981 aggtcagctt taagaccaac aaggccaagt agattgcagg cggagtggaa gtggatacag 2041 attaagatga agatgcagat gaagcagcac ccccggaaac cattgtcctg aatctaaaca 2101 tcctgacaca caaccacaca caacacacat atataaatat gcatggtata acggtaacta 2161 agcgcaacaa aacagtatgt gtaaaacaca cacgaacaaa aaagaaaaca agaaagcatc 2221 aggcaggaga aagtattctc gaacgacaac gaaacggcgt aaacccaaac ccagaaccct 2281 ttttaactac acatagatat ccccatccaa tccaatccaa tccaaacccc aaaaaaaaac 2341 aaaacaaaac cgccggccaa aagcgttgca atagcaaaat tcttcttgtt tagcatttaa 2401 gtaacaaatc attaactaaa cgaaacaaac aaaagaaggg agctgcctga agttgaggag 2461 aagaaaagca ggggagtgag aatgaaccat gagattataa ggaaaaattg caatattaac 2521 aacacactct ggcagctgtg gaaagaaaga aaggtcaaag gttgccgcag tcaaattagt 2581 cgcaaagcaa aacaaagaaa tcaaccaaac acacaaaaaa aaaacaaagg gaaaaagcaa 2641 aaaactatga caaatttaac tttactagca aaaaaagaaa atgagaaatt ttaaaaattt 2701 attaacctta agtaaaacgc agcaatgaaa tcttccaaac aaatgaaaac aagaaatctg 2761 ttagttacac tccaactttt tctaccataa aaacttcaaa acttgaatct aaaaaagagg 2821 ataaggaaaa ggataagaag aaaaacaaaa acagaattaa gaaattagag gagttcagtg 2881 tctaggattt atacaaggtg gcccgatggg acatcagttt ggcttgatcg aaaacggggg 2941 cgggacaaaa agtattcgac ggggcgatcg agaggatctc gagcatataa tagatatata 3001 ttcataacat ggaggctgct acagtattac aagaaacata aaaacataaa aacaaaagct 3061 acatacttaa caaaacgaat ggcaaacaga gcgcacgttt aataattcta aatatatata 3121 tatccgtatg tatatgcgat aattctatat ctacctagat atacacttaa atatagaaat 3181 ttaacgaatt ttttttgtat gttttgtgtg ttgttttcta cacttagaga acgaaacccg 3241 atttgatcaa gccaaactcg tgccccctga gagcacaact acacacacac agtgaaaact 3301 gtaaaaaata tatagaaaac atatagcaag atcgagggaa agagaaagtt agcgaacgga 3361 aaacaaaagt aatacaataa tttatgcgca aatttgaaac gttttactaa agtaaataat 3421 tgttagtgaa tattaatact gtaattgtgc gcgtgcagcg caggtatata gcttgctatg 3481 tacaggcaaa tgctggcgta ggcacacctt atatacttta tataatgtat agttcaagga 3541 gcaagtaagc ataatgaagg aataacaaaa tacttgctaa accaaaacat ttttagcgtt 3601 aaaacaaagc gtagcacaaa caattactaa aaacaaaaac aaaaaacgaa aaagtaaagc 3661 agaaacaacc ttttttatat gacaacagtt taaaacaaag taaaaaaccg aaaaaaatat 3721 gaaatggaaa atatgaatga ggggcatgag caaaagcatt agcaaagcga tttctctagc 3781 caagtaagtt gacaaaggat aaaggataaa gggaggggcg acttatagac gaggataact 3841 cccagcacat cctacatata taataatacc ccatcaatcc catatcccga cctacaactt 3901 ttgtgcaatt tttgcgtttt ttattagttg aaactcttct gtatatttct ttgcttcttt 3961 tgattgttaa agcgagagag tgagacacac acacataaat atctacatat ataattttga 4021 ttctggattc tatattctat actccgtatt ccgtatttga attaagtttt gtttgatttc 4081 tttgtttgct ttgtatacga attgtatttg aaaataggct cctgcatatc cagtccataa 4141 aaccagtcag acccaaccat gcatatttat acgaatgatt tgtgtttgat ttgtttataa 4201 cgtttaacct aagatgacac acaaccccaa ccgattttga gttctctctc caaatagcat 4261 aaattcttaa ccttaactta agtttcaacc agagcattga acagaaccca aaaagcgaaa 4321 tagaaattga tttaactttg aatattatta cgatacctag cgctatgtgt aatcggatat 4381 atattaccgc atatatatat atctcactaa atataattat ttttttgtat aactataggc 4441 caacaaagaa atcttttttg tttgaacaaa attcgcaaca agaactctag tcagaagatg 4501 gaaaagaaga agattacgat gagggagaaa gaagttttga ggcagccgca catgtaggga 4561 ggaaaacata tatagtagat caaaaccaaa agaactatgg caatttctag gtaataaaac 4621 gattgattga agcggcctgc tctccccttt ccaaagatta agcccctcga aacccataag 4681 acgagaaggg agcaaagcaa agggcaagca cgaagtcaaa gggcaagggg tttcccccta 4741 ctttgacttc ctgcttcccc ggatacattt gcaatacatt atttacaatc tgctagttta 4801 tttatacacc cacataagaa aacacactgt aggacaggaa agcaggaaga aaatcctgtg 4861 gaagcgaaga ttatgtactt gattttgttt aatttgtatt tctgtcatca catactctca 4921 cacacgacac acacacacac atatatatat gtatatgtat atgtatattc aatatttaat 4981 ttaattaact aatcctttaa tatatatata tacttatatt ttttgtcatc gatgatctaa 5041 ttaattgtat taattctaat tcttgtgcaa tagttttaaa atgcaactaa cggcaaaaca 5101 acagcaacaa tttttcaagc atctcaaact ataaattaca aattataatt tcattaagtg 5161 aagaagaaaa cgagaaacga aaaaaatgaa tcttttacga ttatgtgtaa cttaaaagta 5221 tcattattct atataccgca aaacgagaaa gaaaagccaa ccacagcaac tacaaaaaaa 5281 tttaacaaaa tatacaatta ttttttaagc taattcgata tgtatttcga gtacatatat 5341 ttatatctca tcatttttct ttacctattt aagtaagcga agaaccaaga aaacaaacgg 5401 aatcgaaaca aaaaacatta tttattgtat ttttataatt acgtaattta atttaattca 5461 atttgaattc aatattcctt tgattttgag caaagcgaag atgaacaaga agattatgat 5521 gaagaattag tctaattata cacacaacaa aggaacagag agagagagaa aaaaagagtg 5581 tctatataat atcgggaatc tataacttcc cagctctctc tcctcccaat ctccccttct 5641 ctcgatatct ctctatttac ccctatgttt ggtttaattt taattttata ccttgtattt 5701 tattttgatt tgatttcgtt tcaacaaaac cttttatgtt tcagttttag ttttaattta 5761 tgattttatg ctatatgcta tacccatttg atttgtcaca gcaacgagaa cacaacaacc 5821 aacccagcgg ttttagttga tatcttagct atatacgatc tgtgtgtaca tatgttaaca 5881 tgtaaaccca cgttagttaa agattcctgt gaatcctatc gaatgaatat tatgattacg 5941 tttattatta tttaatatgc tttatttcct ttctttgatt ttgtgtattt tgctttttga 6001 tcggattatg caacgaatta tgtttgacaa ttacgatcca ttttaaattt atgtttactc 6061 ttatgatttc atttgatttc cgcaccaaac aagtaaaaaa aaaacacgat gaaaaaaatt 6121 tactttcaat aaaaaaaaac ttgatgaaaa ttttagcatc atttttattt atttgttact 6181 ttttggtttt gtttgttttt taaactgtat tattttccaa ccttgaacta catgttttcc 6241 gaatcctgaa atcccaggat tatctattct ctatctctct ctctcttttt gaacactcaa 6301 aaaaaccaga cgatcattga aagatatagg aatcgatcta gtcaaggccc atctttaaag 6361 tggtgccatc ggaatcagtt gatctcagca aaaagacatt cccaatcgtc ccagttttgg 6421 tttagtacta aataccaacc caatgacatg cattccagtt tttgttgctc ggtttagaga 6481 ctctgccagt tgcgatatta tttgtgtgca aaacgagaat acttttaatt tgtgtaatgc 6541 cattatgttt agcgcttata attaacgaat ctcatagtat agtttagcag aaaaagtaca 6601 gtcaccactc cctcgattta cgtatatgtg ggaacatgtc gcgacatgtt ctgtgtatga 6661 ttttgaacct gtatctttgt attgcttaat tgtgtgtaat ttttgtaatt tttagagcaa 6721 agtttatcta tcatttcgat gggcagagaa caggagatgc ttagcgatag cgttaaacga 6781 ttacacaaat gataccgtta ataatcattg acaacaacaa caaggatata tatacctttc 6841 tatatatatt attatgatta aaacgatgaa gacgacggcg acgagaagga ggaaactatt 6901 taatttattt tattaacata tttatatcga ttaattaatt aattaataat atttatcaca 6961 catttcaaat gatatttcaa aatggaaaac aatacaaaaa aaaaacgaat acaagcaaat 7021 gagaaaaaag atattaatat tataaatgta tttcaaaata