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LOCUS XM_017142711 9198 bp mRNA linear INV 09-DEC-2024 calcium-activated potassium channel (SK), transcript variant X1, mRNA. ACCESSION XM_017142711 VERSION XM_017142711.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142711.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9198 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9198 /gene="SK" /note="small conductance calcium-activated potassium channel; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058158" CDS 714..3803 /gene="SK" /codon_start=1 /product="small conductance calcium-activated potassium channel protein isoform X1" /protein_id="XP_016998200.2" /db_xref="GeneID:108058158" /translation="MSIQKLNDTTNSGYVSSEETDSLLVSSSNPSKGGGRTALLRQVK SSSTNGPTTGASTSSSGSVTGSGTGTGSGSGGGSGSVSASGSNSTAGGGTGASKPTLM RQDRTSTYLTSPQQSQHVRMGSEESMRGGGGGGGGGATAHDEDVEQGLQVRSSIVPDI EVHEEDQERGSTTTTTTITTNNQQPTISIMNLSLKPGESHSHSHSSSPGSHPNLGTSS YQNLASSIPPSVPSRCRACRNCSRRASTTPTTLIDRSASRDSVKSAFQQGNLSGSMAI CISNSALPQQQQQQQYHLQQQQHYQLQQQHLQHQQHLQQQQQQQVPPVLITSSPTNGS RIIRQSSQPESSSTAICCGPHSACVGHAHSHSHTVPNVSLKQLRESSGDGIAGIAADS LRINGGMRPFKQGVLLMPRTLSDSRKLRLRRAFTEATNETLQCSKMLRKPASTLSIPG SMKTPSIANREQISSGCNEEAAEALVGIHSDYPRYEMYMEERALTGGNTSRKPSTNSA KHKPNVGYRLGKRKALFEKRKRISDYALVMGMFGIIVMVIENELSSAGVYTKASFYST ALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRIAMTWQRISQIGLELFIC AIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALSLPMFLRLYLICRVMLLHSKLFT DASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEE HANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLEL TRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLL AIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQ SIQEHMESLPDLLSRCLTQHQERIEQRRNFLHPDTAAVAPIQAPTPQSMFNAAPMLFP HSRSVPSSNNAAATYHWPTSPILPPISSRTPHLVPDTHMPSNGSAVNSYASSNKYGS" misc_feature 2265..2603 /gene="SK" /note="Calcium-activated SK potassium channel; Region: SK_channel; pfam03530" /db_xref="CDD:460958" misc_feature 2865..3104 /gene="SK" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 3144..3368 /gene="SK" /note="Calmodulin binding domain; Region: CaMBD; pfam02888" /db_xref="CDD:460739" polyA_site 9198 /gene="SK" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaacaacac taacggaaac atcaacgtga aagcgagacg gacgccctcc gtcccgttat 61 atgctgtgtc tgtctgtctg tctgtgtgtt gagagttcta cgtcgcgcac tccaaaaaaa 121 aaaaaaacca aaaaaaaaaa tcaaaaactt taacactcgc atacacactg gcacacacaa 181 acatacacac acatacatta atatatatag ttaaaaaaaa attatataca aaaagaaaag 241 aagtgcaaga aaaataagcg cccactgcgg ccaatggaaa tgccaaagaa aatgcagcag 301 caacaaattc gacaacaaac gcaaattcta cagcaacaac aacaacaaca agcacagcca 361 cagcagcaac aactgcagtt ccccaataca taggtccacc gattttccgt ctttgtcgcg 421 cgcgttcaca cacacaaaca cagtcacaca ctgggacaca tgcatgtgca taaatggcaa 481 tatggacgaa gagcagcagc agcatttgcc ttgtattggt ataccagcac agtgacacgc 541 gcgtgccaaa tattgccgat tttatcacac gaacaacaac aacaacaaca actgcaacaa 601 cagcaacacc agcgggacca gctattaact aaaggagcca ttacaacaac aaagaccata 661 gcaacaacaa caagaacaac gaacattgct ggaaggcgtc gcaaaatatc aaaatgtcaa 721 ttcagaagct aaacgacacc accaactcgg gctacgtgag ttccgaggag acggactcgc 781 tgctggtgag cagctcgaat ccctccaagg ggggcggccg gacggctctg ctgcgccagg 841 tgaagagtag ctccacgaat ggcccgacga cgggggcatc cacctcgtcg tcgggctcgg 901 tgacgggatc gggaacagga actggttctg gttccggtgg aggatcagga tctgtatcgg 961 catcgggctc gaattcgaca gccggcggag gaactggggc ttccaagcca acattaatgc 1021 gccaggatcg cacttccaca tacctaacga gtccccagca atcgcagcat gtgcgaatgg 1081 gctccgagga gagtatgaga ggtggaggag gaggaggcgg aggaggagcc accgcccacg 1141 acgaggatgt ggagcaggga ctgcaggtcc gcagcagcat agtgcctgac attgaagtac 1201 acgaagagga ccaagaaagg ggatcgacaa cgaccacgac cacgatcacg accaataacc 1261 aacaaccgac catatcaatt atgaatttaa gcctgaagcc cggcgagagc catagccata 1321 gccacagctc cagcccgggc agtcatccca acttgggcac ctcatcatat cagaacctgg 1381 cctcgagcat accgcccagt gtgcccagtc gctgccgggc ctgtcgcaat tgcagccgac 1441 gtgcttccac cacgcccacc accctcatcg atcgctccgc ctcccgcgat agtgtgaaaa 1501 gtgccttcca gcagggcaat ctcagtggct cgatggccat ttgtatatcg aactccgcgc 1561 tgccgcaaca gcagcagcag cagcaatatc acctgcaaca gcagcaacac tatcaattgc 1621 agcagcaaca cctgcagcat cagcaacatc tgcagcagca gcagcagcaa caggtgccgc 1681 ccgttttgat cacctcatcg ccaacgaacg gatcccggat tatacggcag agctcacagc 1741 cggaatcgag cagcacggcg atctgctgcg gaccccattc cgcctgcgtc ggccacgccc 1801 actcgcactc gcacacggtg cccaatgtct cgctgaagca actgcgcgaa agttccggcg 1861 atggaatcgc gggcattgca gccgactccc tgcggatcaa tgggggcatg cggcccttca 1921 agcagggcgt tcttctaatg cctcgcacat tgtctgatag ccgaaagttg cgccttcgca 1981 gagccttcac cgaggccact aacgaaacgc tccaatgctc caaaatgctc cgcaaaccgg 2041 cgtcgacact ctcaattcct ggctcgatga aaacaccttc cattgcgaac cgggaacaga 2101 tctcatctgg atgcaacgaa gaagcggccg aggcactagt gggtatccac tcagactacc 2161 ctaggtatga aatgtatatg gaagaacgtg ctcttactgg cggcaatacg tccaggaagc 2221 catcaacaaa ctcggccaaa cacaaaccca atgtgggcta tcgcctgggc aagaggaaag 2281 ccctcttcga gaagcgcaaa cggatcagcg attacgccct ggtcatgggc atgttcggga 2341 tcatcgtgat ggtaatcgaa aacgagctga gcagtgccgg tgtctacaca aaggcatcgt 2401 tctactcgac agcgttaaaa accttaatat ctgtttcgac tgtgattctt ttaggactta 2461 tagtagctta ccatgctttg gaagtgcagg tgagattatt catgatagat aactgcgccg 2521 acgattggag gatcgcaatg acatggcaac gaattagtca aatagggtta gaacttttta 2581 tatgcgctat acatccaatt cctggcgaat actatttcca gtggacgacg aaattggcca 2641 ataagaataa aacaattggc accgaaatgg tgccatatga cgtagcttta tcattaccta 2701 tgttccttcg attatattta atctgccgcg taatgctgct gcattcaaag ctattcacag 2761 acgcatcatc acggagcatt ggcgctctca ataggattaa ttttaacaca agattcgttt 2821 taaaaactct aatgacaata tgcccgggaa cggttctatt ggtcttcatg gtctcgctgt 2881 ggatcatcgc atcctggacg ctgcgtcagt gcgaaagatt tcatgatgaa gaacatgcga 2941 atcttttgaa tgcaatgtgg ctgatagcga taacattttt gagtgttggt ttcggtgata 3001 ttgttccgaa tacgtactgt ggacgtggta tcgctgtcag tacaggaata atgggcgccg 3061 gctgtacggc tctactagtg gccgtagttt cccggaaact ggagctgacc cgtgccgaga 3121 agcatgtgca caacttcatg atggacacgc agttgaccaa acggctgaaa aatgctgcgg 3181 cgaatgttct gcgtgaaact tggctcattt acaaacatac aagactagta aaacgggtta 3241 atcccggccg tgtaagaacc caccaaagaa agttccttct agctatatat gcgttgcgaa 3301 aagttaaaat ggatcagcgc aaactaatgg ataatgcaaa cacaataact gacatggcca 3361 agacacaaaa cacggtctac gagataatat cggacatgtc tagccgtcag gatgccatcg 3421 aggagcgcct aaccaacctg gaggacaaaa tgcagagcat acaagagcac atggaaagcc 3481 ttccagacct attgtctcga tgtctgaccc agcaccagga gcggatcgag cagcggcgga 3541 actttttaca tcctgacaca gctgcagtgg cccccattca ggcgccaacg ccccaatcga 3601 tgttcaatgc ggcgcccatg ctgttccccc attctagaag tgttccctca tccaataacg 3661 ccgctgctac ttaccattgg ccaacaagcc ctattttgcc acctatatct agtagaacac 3721 cacatttagt gcctgatact cacatgccat caaatggatc tgcagttaat agctacgcat 3781 cttccaacaa atacggcagc tgaatatcag aaagagagcg ctccaactcc gtgattaaca 3841 tcgagatgct aacaataagg ccggatcgat gctggccaac atcctcatca acatcaacat 3901 caaacgcacc ccagaaatca gcattaccat caacatcaac atcaatgtct acgtcaaagg 3961 caaagtctaa acccgaattc gaaatggccg agacagcgct caggcaacgt gtgctatcgc 4021 cgtcgttatc gttattgaaa tcatcgtcac aagaccgcaa tttgcatcaa ataagtgggc 4081 ggcaaatgga aatggaaatg gcaatggaaa gagagatagt accaatatca ataccaatac 4141 cagtgatacc cgaagatgcc gaatcgaata cgaatagcaa cagttcgccc gatcagcaaa 4201 atgtgcagat aagtacagta ccgccatcga gttcaacgcc tgctttcgga actagcggtg 4261 caactagcga tggcattgtc aaatcgataa cgatgaacga accgatgacg acggagagcg 4321 gcaaaccgat tgcctcgaat aagtttacta ggaaaagaga acgtgtatgc aataatagta 4381 gttaatagtg ctaggctata gtgatagtaa taatagaggt aatagtaata ttagtaattc 4441 tacaagtcga atttcgaact cggccttttg taaataagcc tcttcgagat gagaaaaaaa 4501 gtcaaatgtt agcatataca tataatatac ataaaaccac ccacacacac acacttccta 4561 tatatctgta taactgtatg gatgtatagc actccccgaa aacggaaaaa gaaaacccct 4621 taaaaatatc ccaaaacaag aaaaccaaaa aacaataaca gaaaaccaaa cagaatatat 4681 gtatacatat atatacaatt gtgtaaattt ttttttctaa gttttaggct aattgtattt 4741 gtaatatttc accttgggcc aaggcagcct gtacttgcat actaaaattc atataccata 4801 acatagcata gagtgtgtgt gcatgtgtga atgcgagtgt acagggcgag aatggagagt 4861 agaaggtaag gtcataggac atacaaacat atatagatcg taggacacca gcatgtacga 4921 gtagaatcga agtatataaa cgaattacgc tcagcaaggc agaaatagca atagtaaacc 4981 tggaaaatct ggcaccgtca gtatatccct tgtagaaccg caatcctaac tcaaatgggc 5041 caacgagatc ccctgctgcc cgttgcactt tcctttccgt tgcatatcca acaaccaacc 5101 agcaatacat ccacaaacat ggcaaattct agtgtccgtc tgtctcaaat ttgtgtgtaa 5161 atatatatgc atatatagca gtatatatat atgtatccga aggatgtgtg tctgacctga 5221 ctgtgtgtaa cccatgcgac ccatacaaac caccaccccc aacaattata tgaaaaacga 5281 agaagaaaaa acaaaaaccc caaacccaga acaatgaaaa actatctaac tgtaaaatgt 5341 atgttacgag atttagaaaa aacagcgaaa ccagaaaacc aaatactaag agatataaac 5401 taaagccgaa taaaagaaaa actgtggaaa aaacgcaaaa accgaggata aagaaaaact 5461 tacacacaaa aatgagagtt cttacttaac atctactagc tctggcttta actaaactta 5521 cgaaacatgt ttaaaggaaa caagtttgtt gttgtcttct ttttctacgc atatattaca 5581 atatatatag tatatataca tatatatttt cgttgttgtt gtttttggcc tattcttttc 5641 taccaagaat tatgaactca attaagaacc tgaatagctt tcgaaggaaa ttgaagatga 5701 agacgatgat gatgatgatg atataatgat atagtagcgt agacaaaacc aagaaacaaa 5761 tgatatgaaa tcgaaaaacg aactatttag tatagtctac atactaaagt gaacaatttt 5821 aattgcaatt ttgtaacata ttaaaagtaa ttcgcattaa tttacaaaaa ctagctggta 5881 aatgtgtaac aacggaacaa actacaagct ccagatggaa aataatagaa ccgaaatggg 5941 gagaagcgaa ttgaaattga attgaaattg aagtggaggt ggaactggaa atggaaatgg 6001 aaatgagtag agcagattag tgtagacata atagcagaag tggccgagct acgtaaagat 6061 tttctaaaga ttctaagagg aacattatat atactatata cttactataa agtattaact 6121 gagagcatcg aagttattta aaaccaaatg aaaaacgaat gcaaaaagaa aaagcaagca 6181 attaggtaat atgcaacctt ctaacgcttt gttaggatcc catcccaaat ggaaggcaaa 6241 agagatatac aactgaattc cccgaatagt gcccccacct ccccagaatc tcccgttccc 6301 atcaccccaa ccaaaaatcc cccaaagtca gcaagacaga ctctgcatat tattatacag 6361 aaccagggcc agaaaggatc aaaatatctg taaactatag attatatagc cgtaggattc 6421 agtccactta agccaactaa taaaagtata gaagttttgc cacactgatt taccacatct 6481 ccaaaacccc tggcttcagt ttgtttctat gaaaattaaa accccacaac cataaagttt 6541 cccaattgtc tgatagatct taacttatat acatacaatg aaaatcccag accagcaaag 6601 gagtcaaagg agaacaaaca acaaacaaga aacaaacaaa ccaactaaat gaacccttaa 6661 acaaatgtgt gtatacctat ttataatatt gaatatttaa attgaaaaga acgttcaaga 6721 ctgctgtcaa aatagcttta tcacaataaa taacaaagat ctacacaaga cgacacacac 6781 caaacagaac agaacagaac agatcagaac aacaatacta aactgatcga taagtatcgt 6841 ttatcgaatc ggaacagaca cctaaagata cacacaacac acagattctg atacgagata 6901 tggaatgcgc ccagctttaa cgttatgtat tcgtgcatat ttgggtttca actctacaac 6961 aacttaaaac gaatacgcaa aagaatactg aacaaagatc gatatacgat taacgattaa 7021 caattaacga tatacgaatc aaatcaaatc gaattgaatt gaataattgg tacaagatca 7081 aattcccgtt tgaactggtt tcctaagccc cacaaaatac ctttaaacac gagataaaaa 7141 ccaaaaactt tgatatgagg gaccgaattt ccaaagacag gtctttatta tacaaaaaac 7201 cgaacaacct aaaaccaaaa gcaaaagcaa accaactaac gaagaattcc tacaaaaaaa 7261 aacaaaaccc ataacagtaa caatttataa taccgaagat ttttagccgc ttttgagctg 7321 gattatgaaa agaaaaagga atagaaaaag gaaaagagaa aaacacaaat aaggatcgta 7381 ttgcacaatg tccttggttg acttccgtaa catcatatag acacaggtcc gagtcccacg 7441 tccagtttta gtgtgtattg tgtatttccg ttcaccttaa tcagaattga atcgaaaaat 7501 atatcaactt tcttttcttc agcgaatcat agagctcaag gggtacttcg agaatcacgc 7561 ttcaaccgaa actcttctag ccaaaccagg tccaatagaa cttacataca tatagcccag 7621 ccaatgccaa tgctacaaac caaaaaaaaa aatggattcg agttttcgaa aacgtatcga 7681 accggattat gacgaaaagg gcagccattt tggtgaattt acacgctagg aactagaaaa 7741 gggtcctccc aaacaccaaa taccccccaa actccataac ccctccccct cccccacccc 7801 ctgtgcgccc aactagatcg aggtatgcaa aatatataag gttacatata caatatctag 7861 atatacaaca cacatatact cgtatataca tgtacagacg gtctatgagg tatataccaa 7921 acccaagaaa gcccaaaaac caaaaacccc acactaataa gatcatattt gactttatat 7981 gtattatagt aatgtattca gtagctaaat cgaaagccga agcaaagacc aatttattaa 8041 caacaaacta ataagataac ccccaaaatg gaaaacaatt attatgttaa attaaaccat 8101 taaaatctaa gagggaggca aaacaatttt tttattgaaa aaaaaaaaca agaaaaacaa 8161 aacaaaagaa aacaaagtaa actagaatgc attgcatgaa ttaaataaag agaaaaaaac 8221 taatagaaac ccaaaactta actaacgaag gtcaactaaa actaaactta aacttaacct 8281 actctaatgc taaaattgaa gtaaaattaa cttaaaacca ctaaaaggaa aaaagattta 8341 atttctaaaa gaaataaagt aagaaactaa aacaaagtaa acagaaaaaa attcagtggc 8401 taatgaaata gtttattttg aatttactgt attgtatatt taaatttaaa caaaaaaggg 8461 aaaccccaaa caaaatatat tgttatatct tatcgaggaa ccgtgttttg caaaagcttt 8521 aatatttagg gtgcctacat ttgctaaatt agtattttac gatttaaaac ttaaagaaaa 8581 aacaaaacaa atactaaaac caacacctac atacacgaaa tagtataaag cttgattgaa 8641 aaacgaaccc aaaaagttag gaacgtgaat ttccaaaacg attacactga acaaaaagaa 8701 aaccgaaacc aaaacaaatt aagaacaact aacagctaaa gcaaatattg tatttgtatt 8761 tgagatatga attttaagaa tgtttattag acttacggtt ggttattttg tatacatata 8821 tatattatat gtattatgta tgtagtataa actgatctga tctgacgacg attgtaattg 8881 tttttttttt tgctcattaa gcatttacct cataagaatt cccactattt atagcaaatt 8941 taccatatta cataaaatca attgctgtac tgttataatg tacaacccca aggaaacgat 9001 atgtaggacg aggaagaacc ataacaagag agagaaatcg ataaaagtcg aggggcaaga 9061 ggaaaactca taaaactgta aattattaat taatgaagaa aaaaccaaag agaataattg 9121 aaattttaac aataataaag ggctttgtat gaaagaaaaa caaacaaaaa ctgaataaaa 9181 atgaaataaa agtaacaa