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LOCUS XM_017142136 3453 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017142136 VERSION XM_017142136.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142136.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3453 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3453 /gene="dec" /note="defective chorion; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108057735" CDS 76..3393 /gene="dec" /codon_start=1 /product="defective chorion protein, FC125 isoform isoform X2" /protein_id="XP_016997625.2" /db_xref="GeneID:108057735" /translation="MRLHSLLPLLALLAVQAVAQSDTITAEDPPKDAGSKTNSSTETR LRYPSNDEILGQMPPISPIRTGNPQMDAFYMMFPALGSLLRWGSLFPAYSILGAIPDG LQPTAAASKVVLVLAEDATAKTRVARQNPAVPNPFPLLTNWPSLPQEFQIPNMDFAPQ VGAFLAQMPQMPAMPALLGAAAPNPAPVAPAPAAPAAASPAAPDAPPAPAAASPETTF QQSLLGQMQSIMNPANFDATTLLGQGIPALAPIPANMDFVSQMQKQFFPQMSSPASVA QASDISEVRVRPEMAQLAQQKIKATLEKEQEKQEDQEQVPLLWFRMPSGGEGQDATEE KTLEDLRVEAKLRAFERQVIAELKMLQKIELLAKQMRSNAAQSGDPSYRISYPLSRTP VHKITRADIEQALRDDYVRRLVNKEAQRKARNSGAGGQKRQAKAQDQQQLSKEDIVQI MAYAYRMANEQMEGEKGKQDKMYAAYRTGENQAAQQKQTQEMMQQQQRQWSEDQAKIE KNQQPMMQQQPRQMMPDQQQIQQNPMMQQQRQWTEEQARIQKERQWTEDQAKIQQGPM VMQQRQWTEEQARSQQMAQQAPMMMQQRQMEAQPNPMMMQQMQQRQWTEDPQVVQQMQ QRHWAEENEHPGIHPQMMMQQRQWSEEQAKIEQQNAMMMQQMQQRQWSEEQAKIQQQQ QQERQMMKQRQWAEENPQMMMQQQQQQRMEDPEQNMPNNQEMDEPTVGDAGPQMPENE GIARHKVDSLGLGGNKRKKSKSAGHTVVNYYYSAPAQRPAVQNYGSSYGTSYGGGGYG SNAYGVPAYPASSGYQSQGYRAAVGNDEVDDMLRRHQTMARTINPQQPGQVGGSESSS NPPLATTPAPQEQSQSPQPQEHRVHKSSSSAPSEIENENAPSSDPDPQVGSIYTYGEG LLHPFMGLLPVDRPEDPWHQRPYDLHHPLYEGGGSYAAYLKDGRRRRDTHIMGQASSS PSGILTPGMLERLLRIKIDFQRRFPHLYKGMLNHHTNLTRVEVQPPVLGKISKPKAKP KSRDESEEPVFELGAAERSLFEEEEEANDPLEKEPQTEAEEEEDDREAEEPKESSETR HNNDIDYFSFDGDDVDD" misc_feature 298..1476 /gene="dec" /note="DEC-1 protein, N-terminal region; Region: DEC-1_N; pfam04625" /db_xref="CDD:368028" misc_feature <1651..>2034 /gene="dec" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:401645" misc_feature 2236..2610 /gene="dec" /note="Dec-1 protein, C terminal region; Region: DEC-1_C; pfam04626" /db_xref="CDD:282480" polyA_site 3453 /gene="dec" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcggcagtca gtcggcgaaa gagctccggc gcacacaccg aatagatcag atcagaagcg 61 atcaccgagt tcaggatgag attgcacagc ctgctgccgc tcctggcgct ccttgccgtc 121 caggcggttg cccaaagtga tacgatcacc gcggaagatc cacccaagga tgccggttcg 181 aagaccaatt cctccacgga aaccagactg aggtatccct ccaacgatga gatcctcggc 241 cagatgcctc ccatctcgcc catccgcact ggcaatcccc agatggacgc cttctacatg 301 atgttcccgg ctctgggcag cctcctccgt tggggcagcc tcttcccggc ctactccatc 361 ctgggcgcca ttcccgatgg cctgcagccc acggcggcgg cctccaaggt ggtgctcgtc 421 ctggccgagg atgccacggc caagacgcga gtggctcgtc agaatcctgc tgtaccgaat 481 ccttttcccc tgctgacgaa ctggcctagt ctgccgcagg agttccaaat acccaacatg 541 gactttgcac ctcaagtggg cgcctttttg gcccaaatgc cgcagatgcc ggcgatgcct 601 gccctcctgg gtgccgctgc tccaaatcct gctcccgttg ctccagctcc agctgctccg 661 gcagcagctt ctccagctgc tccagatgct ccaccagctc cggcagccgc atctccagaa 721 actaccttcc aacaatcgct gcttggtcaa atgcaaagca tcatgaatcc ggccaacttt 781 gatgccacca ctctactggg tcagggaata cctgcattgg ctccaatccc tgccaacatg 841 gactttgttt cccaaatgca gaagcaattc ttcccacaaa tgtcttcacc tgcttccgtt 901 gcccaggcct ccgacatttc cgaggtgcga gtgcgtcccg agatggctca gttggcccag 961 cagaagatca aggcgacact ggagaaggag caagagaagc aggaggatca ggagcaggtg 1021 ccactcctct ggttccgaat gcccagcggc ggcgagggtc aggatgcgac ggaggagaag 1081 acactggagg atctgcgggt ggaggccaag ctgcgggcct tcgagcgcca ggtgatagcc 1141 gagctgaaga tgctgcagaa gatcgagctg ctggccaagc agatgcgttc gaatgccgcc 1201 cagtcgggag atcccagcta caggatcagc tatccgctga gtcgcacgcc cgttcacaag 1261 atcacacgtg cggatatcga gcaggctctg cgggatgact acgtgcggcg attggtcaac 1321 aaggaggccc aacgcaaggc caggaactcg ggagccggtg gccagaagcg acaggccaag 1381 gcccaggatc agcagcagct gtccaaggag gacattgtcc agatcatggc ctatgcctat 1441 cgcatggcca acgagcagat ggagggtgag aagggcaagc aggacaagat gtacgcggcc 1501 tacaggacgg gcgagaatca ggctgcccag cagaagcaga cccaagaaat gatgcagcag 1561 cagcagaggc agtggtcaga ggatcaggcc aagatcgaaa agaatcagca acccatgatg 1621 caacaacagc cgaggcaaat gatgccggat caacaacaga ttcaacagaa tcccatgatg 1681 cagcagcaga gacagtggac tgaagagcag gccaggatcc aaaaggaaag acagtggacg 1741 gaggatcagg ccaagatcca gcagggtccc atggtgatgc aacagagaca gtggacggag 1801 gagcaggcca ggagccagca gatggctcaa caagccccca tgatgatgca gcagaggcaa 1861 atggaggcac aaccgaatcc catgatgatg cagcagatgc aacagaggca gtggaccgag 1921 gatccccaag ttgtgcaaca gatgcagcag aggcattggg cagaggagaa tgagcacccc 1981 ggtattcatc cacagatgat gatgcagcag agacagtggt ccgaggaaca ggccaagatc 2041 gagcaacaaa atgccatgat gatgcagcag atgcagcaaa gacagtggtc cgaggagcag 2101 gcaaagattc agcagcagca gcagcaggag aggcagatga tgaagcaacg ccagtgggcc 2161 gaagagaatc cccagatgat gatgcagcag cagcagcaac agcgaatgga ggatccagaa 2221 cagaacatgc ccaacaacca ggagatggac gaacccacag ttggcgatgc tggtccccag 2281 atgccggaga acgagggtat cgcccggcac aaagtggatt ccctgggatt gggcggcaac 2341 aagcgcaaga agtccaagtc cgcaggccac acggtggtca actactacta ttccgctccg 2401 gctcagcgtc cggccgtcca gaattacgga agtagctatg gaacgagcta cggcggcggt 2461 ggctacggat cgaatgccta tggggtgccc gcctatccag ccagctccgg ctatcaaagt 2521 cagggctacc gggcagccgt gggtaacgat gaggtcgatg acatgctgcg ccggcaccaa 2581 acgatggcca ggacaataaa cccccagcaa ccgggccaag ttggtggatc ggagagcagc 2641 tctaatcctc cattggcgac gaccccagct ccccaggagc aatcacaatc accgcaaccg 2701 caagagcatc gagtccacaa aagttcatca tcagcaccat cagaaatcga aaacgaaaac 2761 gcaccatcat ccgatcccga cccccaagtg ggttccattt acacctacgg cgagggactg 2821 ctgcatccgt tcatgggtct gctgccggtg gacagacccg aggatccctg gcaccagaga 2881 ccctacgatc tgcaccatcc cctctacgag ggcggcggga gctatgctgc ctacctgaag 2941 gacggtcgtc ggcgcaggga tacgcacatc atgggtcagg catcctcctc gccgtcgggc 3001 atcctaactc ctgggatgtt ggagagactt ctacggatta aaatcgactt ccagcgtcgc 3061 tttccgcatc tctacaaggg catgctgaat caccatacga atctcacccg ggtggaggta 3121 cagcctccgg ttctgggcaa gatatccaaa ccgaaagcga aaccaaagtc cagggatgag 3181 agtgaagaac ctgtcttcga actgggagcc gccgagcgca gcctgttcga ggaggaggag 3241 gaggccaacg acccgctgga gaaggaaccc caaacggaag ccgaggagga ggaggatgac 3301 cgggaggcag aggagcccaa ggagagcagt gaaaccaggc ataacaacga tatagactac 3361 ttcagtttcg acggcgatga tgttgatgac tagacttttg ttttataaag ccaataaaag 3421 tgaatattaa atattattaa tgtgaaaacg aaa