Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017142134 3335 bp mRNA linear INV 09-DEC-2024 singed (sn), transcript variant X2, mRNA. ACCESSION XM_017142134 VERSION XM_017142134.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142134.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3335 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3335 /gene="sn" /note="fascin domain-containing protein singed; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057734" CDS 700..2238 /gene="sn" /codon_start=1 /product="protein singed isoform X2" /protein_id="XP_016997623.1" /db_xref="GeneID:108057734" /translation="MNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGF KLNANGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESEERDAGSRF QISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVHLAARPQVNLRSI GRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEGGRYALHTCNNKYLNANGKLQ VVCNEDCLFSAEYHGGHLALRDRSGQYLSPIGSKAVLKSRSSSVTRDELFSLEDSLPQ ASFIAGLNLRYVSVKQGVDVTANQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSA GGGIQATGNRRCADALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKF YFYLINRPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSGKY WRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFKLLDDGTDSAT QWEF" misc_feature 763..1152 /gene="sn" /note="first fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt1; cd23347" /db_xref="CDD:467455" misc_feature order(769..771,778..780,784..786,880..882,886..888, 910..912,916..918,1009..1011,1039..1041,1045..1047, 1138..1140) /gene="sn" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:467455" misc_feature order(856..864,871..873,1147..1149) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467455" misc_feature 1153..1515 /gene="sn" /note="second fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt2; cd23351" /db_xref="CDD:467459" misc_feature 1384..1398 /gene="sn" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:467459" misc_feature 1519..1893 /gene="sn" /note="third fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt3; cd23355" /db_xref="CDD:467463" misc_feature order(1771..1773,1879..1893) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467463" misc_feature 1894..2235 /gene="sn" /note="fourth fascin-like domain, beta-trefoil fold, found in Drosophila melanogaster protein singed and similar proteins; Region: beta-trefoil_singed_rpt4; cd23359" /db_xref="CDD:467467" misc_feature order(1894..1899,1996..1998,2002..2004,2014..2016, 2020..2022,2107..2112) /gene="sn" /note="putative actin-binding site 2 [polypeptide binding]; other site" /db_xref="CDD:467467" misc_feature order(1894..1899,1996..1998,2002..2004) /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467467" misc_feature 1912..1926 /gene="sn" /note="putative actin-binding site [polypeptide binding]; other site" /db_xref="CDD:467467" polyA_site 3335 /gene="sn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacgggtttc attcccactc gagtgcaatt cgtgagcggt cgttctctcc tctctctctc 61 tcgcagcaag gcaaagctac tgtgcgcgca tgcgtctcgt ctcagaaaaa cctgcaatca 121 gaaatctcga atcgtgaaaa tccttttctg ccataccaaa aaaagagccg gacaaagcaa 181 agcgttcgat tgccttctgc tgacttcgag cagggtaaaa cataaaggga aaatacaaat 241 taattaagcc gccccgaacc gtgatttgtt tacgtttttt tcttcaactt ttttttgcat 301 tgtgagtgtg aaccgaagca gttatcccta gatatattcg aaattcgaat tggcgaagtg 361 aagggtgtga cggcagacgc acacacacag gcacacgcac acgaacgcac tgagaaaaca 421 ccggctaaaa ggcagacgaa aaggagacga gacgagagag tgctaaatag aaaacgcaaa 481 aacaggataa taaccaacta actaatacta taaaacaagc gactaagtga catctcgatc 541 tcgccgagaa acaacaacaa cagcggcagc ggtagcaaca acatcagcag cggcagcggc 601 agcaacaaca gcgaaggcag aaaacatagt aaagtttgtt cttcctctga aaagaagccg 661 gaatccggag acagccccaa gattgctccc atcagcacca tgaacggcca gggctgcgag 721 ctgggccaca gcaacgggga catcatctca cagaaccaac agaagggatg gtggaccatc 781 ggcctgatca acggccagca caagtacatg accgcggaga cctttgggtt caagctcaac 841 gccaatggcg ccagtctgaa gaagaagcag ctgtggacgc tggaaccctc gaacaccggt 901 gaaagtatta tctacttacg atctcatctg aacaagtacc tttcggtcga tcagtttggc 961 aacgtgctgt gcgagagcga ggagcgggac gcgggcagcc gcttccagat cagcatcagc 1021 gaggacggca gcggccgctg ggcgctgaag aacgagtcgc gcggctattt cctcggcggc 1081 actccggaca aactggtctg cacggccaag acgcccggcg ccagtgagtt ctggacggta 1141 catttggctg cccggccgca ggtgaatctg cgctccatcg gacgcaagcg gttcgcccat 1201 ctctccgagt cgcaggacga gatccatgtg gacgccaaca ttccgtgggg cgaggatacg 1261 ctctttacgc tcgagtttcg tgccgaggag ggcggtcgat atgccctgca cacgtgcaac 1321 aacaaatatc tgaacgccaa tggcaaactg caggtggttt gcaacgagga ttgcctgttc 1381 agcgccgaat atcatggcgg tcatctggcg ctgcgcgatc gcagcggtca atacttgtcg 1441 cccattggct ccaaggcggt actcaagtcg cgctcgtcgt cggtgacgcg ggacgagctc 1501 ttctcgctgg aggactcgct gccccaggcc tcgttcatcg cgggcctcaa tttgcgatat 1561 gtgagcgtga agcagggcgt cgatgtgacg gccaaccagg atgaggtggg cgagaacgag 1621 acgttccagc tggagtacga ctggtcggcg caccgctggg ccctgcgcac cacccaggat 1681 cgctactggt gcctctcggc cggcggcggc atccaggcca ccggcaatcg ccgctgcgcc 1741 gacgccctct tcgagctcat ttggcacggc gacggatcac tgtcgttccg ggccaacaac 1801 ggcaagttct tggccaccaa gcgctcgggc catctgttcg ccacctcgga gtccatcgag 1861 gagatagcca agttctactt ttacttgatc aatagaccaa ttctcgtgct gaagtgcgag 1921 cagggattcg tgggctatcg cacgcccggc aacctgaagc tggagtgcaa caaggccacc 1981 tacgagacca tcctggtgga gcgcgcccaa aaggggctgg ttcacctgaa ggcgcacagc 2041 ggcaagtact ggcgcatcga gggcgagagc atctcggtgg acgccgatgc gcccagcgat 2101 ggattcttcc tggagcttcg cgagccgacc aggatctgca taagatcgca gcagggcaag 2161 tatctgggcg ctacgaagaa cggggcgttc aagctgctgg acgatggcac cgattcggcc 2221 acccagtggg agttctaggg cgggaccacg cccactcccg aacgggctgc tgcacgcgtc 2281 atcagtatca caatcacaca cacacttccc atccaggcgg ggattcccta attatcgatc 2341 cgcgcaactg aagcgccgag agaagtcgtc gcacaatgaa tttgagatcc taaacagcaa 2401 ttgcaacatt gaaacgagaa aagaaggaga aaaggagaga tgcgagtgaa tggagaaaat 2461 gaaaacttaa acaacaacaa acaaaaactt atatatttat atataaagat ctacgtatac 2521 atagaaagag agattttttt taaacaacct atttagcttt ttatacgttt tatatgagat 2581 gagaatatct acgaaacaag aacaagaaac aaatttttta gcgtagacta cgaaacgaaa 2641 cttctgtcgc gagtccttcc gttttatcaa atatatatca gcaactaggc cagcaaaaat 2701 gaagaaagac ataatggtta tacaagcaca tcatatatac acctaaatat acatatttga 2761 ttcgtaaagc ttagcggaat aaaaaaccgg aaaaaaagat aagggaaata agagcaagaa 2821 aacataaata aatgaaaaaa gaaaaaaaat aaaaataaat caacacatat tcctataaat 2881 ttatttatat atttatatac atattgatat aaacgataac acacggacac acacatacac 2941 atacacacga ccccacacac gcacacgtac ccacatgtac ccacacaccc acaaacccac 3001 aaacccaagc aagcaatttt aatacgcaaa acaaaattta gccactaagc aaaccttaaa 3061 aattaatctg taataaaaac aaagtcaaaa attaaacatc aaatctctcc gtacggcgat 3121 tttgcaatgg aatcatctcc actatatcta acatatgcat atattgaatt agttttttgt 3181 tatttatttg cgtcgatttc ttaattaatt agtaatcttt ttttttttaa tttgtgcact 3241 tcaaatcgaa acaaaaaact caaaccaatt tagttgctaa atcttaaaat ggaaattttg 3301 tatgatacat atgaaatata tacatatata caaga