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LOCUS XM_017142131 4861 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017142131 VERSION XM_017142131.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142131.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4861 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4861 /gene="snz" /note="sorting nexin snazarus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108057732" CDS 745..4062 /gene="snz" /codon_start=1 /product="sorting nexin-25" /protein_id="XP_016997620.2" /db_xref="GeneID:108057732" /translation="MESEECAVDAMENRRLPLFPIEPEPSVTATQRLTLLATRLLRAL QLNWRIIVSGITVTLLAVIWYYPTFFLFFAFVVYSLVLVFAAVAGTVYIHYIFTTNEP TPPSRVPSRLLYNATKSNIFDLPKPIKNPSNLPLIFGKTVDLQLQQIIEYVLRDFMLP WLGYVVTKPKLINDVVREDLWNAIQKIHERATRMDAAKIIAVDMVNRVTVHLEKIRIA EARAAETNTPPVFSTNPYLADEEKEMEFLRKLCEIMVILLLPRGYSLPPLKVLLSEIL SYKIFFPMIKMLTAPDYINQKVVQNIETRLAAAAMSKRSYEYAASFEDFLKIINNSGN LEELSLIRKSIVNDLMHATTMQNLQRAKGLDPDHEDHSLSKSELTAAVRLKRYVRQLT MAKGECEKNLAKFGWNGNYSSDTDLTLVEILNTAVGRRYFTLFLEPLKASALIGFYLA VEEIKHAHKSASHQLGTEIFYTYIRVPKSEIQIDKHERKLIETFLLGDADPDIFYDIQ RNILRTLEEKYYPPFVLSDQYRQLKEALDSNEIADPTLLMCHSIGDAPLEPLADEQPE ASDGLNGGAGGAIDVAAHTSYARRKLEQIQERIDKKNQALDALKYSVKPESKVLSILE KEMEWLKSEKRQTEAHLRRTDAWTEHLGKWKATIQSVEVSDEKESLQFMILVHVDEDI NAPAQPTSSKNGDSGQANLRKRPSGISSGWVVMRSLNQVHELQRKLRHVSSNLKAIDL PTNFKFFFLKTDRHGQEKAKLQIQKFLNFILEDDHLNGSEAIYTFLSPSSDHLKQSLP SPKKSKFSLATLFRSDAGKAAHEASRATDPFWGLQRDDEDISTYLDGESGVEAKMLAA DLDSKDSIAEPMYALMGEIFDMGGVFKWLRKSLISFVQITYGRTINRQIRESVAYLFE ESMLHNYFSAVLKSFWPGGVLASAYPTRSEDMREMTTTAAKALLTDHIPEVLCNLVGA QAAKRGVLKVFEALQNPAYNKQLFYELLEILMIEFFPEIRQLRVNNANGSKLNTATAG AAAASAAAALVAATASASLPSLNHSASAGGNHNHQGSSTGSGSSAGGSGSSASGQSHY HHASHHHHHHSQAGSSK" misc_feature 1168..1644 /gene="snz" /note="PXA domain; Region: PXA; pfam02194" /db_xref="CDD:460484" misc_feature 2008..2337 /gene="snz" /note="Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein; Region: RGS_SNX25; cd08720" /db_xref="CDD:188675" misc_feature 2680..3111 /gene="snz" /note="The phosphoinositide binding Phox Homology domain of Sorting Nexin 25; Region: PX_SNX25; cd06878" /db_xref="CDD:132788" misc_feature order(2893..2901,2980..2985,3019..3021) /gene="snz" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:132788" misc_feature 3394..3711 /gene="snz" /note="Sorting nexin C terminal; Region: Nexin_C; pfam08628" /db_xref="CDD:462541" polyA_site 4861 /gene="snz" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atattggcga aaatcataaa cataacagta aagatagtgg atagccgggc gtgaaagcgg 61 acttgtgacg tgttatcagg gccgatgcga taagcgctac gtcaggcgcc gatcccaact 121 gcgcagcagc agcgccagca acaaaaacaa acacaagcag aatttgaatt cgtagatgag 181 gagaggagtg ttattattat aatcagtaat cagagtcgcc ttgttttgat ttcgaatttc 241 ctcggaagcg aaatgaaacg aaacgaaaag aatcggattc ggattcgggt tcggatcgta 301 atgaaatgaa actccgctcc ggataaagct ggccaatcga atcaacttgt tgcggaaccg 361 ctgcgtcgcc cagtattgat ttagcgcata tagccgacag ttgtgattcg gatttcgatt 421 cccagccata tatattctac aaacgatacg ataatacgac gcttctccaa aaaccaatac 481 catacgatac catatttgtg ttcgtttttc attcgtgggg gaggtggata gaaaagaagg 541 cggaggagaa ggaggaggag gaggaggtgg acaccagacc caaagcggaa ttgacgcaat 601 tgttgagaac tatttttaat agtcggcggg tcgaaaatgt acgaaactca tcaaatattc 661 agaagacagg cagccaataa gccgagccac tgattcggag gtcccaaaat cggaagagga 721 atcgaaagcg gagtcaattg gccgatggaa tcggaggagt gcgcagtgga cgccatggag 781 aatcgccgtt tgccgctctt tcccatcgaa ccggagccct ccgtaacggc gacgcagcgc 841 ctgacgctcc tggcgacccg actgctgcgt gctttgcaac tcaactggag gattattgtc 901 tcgggcatca cagttacact tctggccgtc atctggtatt atcccacctt ctttctgttc 961 ttcgccttcg tcgtctattc gctggtcttg gtctttgcgg ctgtggcggg caccgtctat 1021 atccattata tattcaccac caacgagccg acgccaccga gtcgcgtgcc ctcgcgactt 1081 ctctacaatg ccaccaaaag caacatcttc gatctgccca agcccatcaa gaatccatcg 1141 aatctgccat tgattttcgg caaaacagtg gacctgcagc ttcagcagat cattgaatat 1201 gttctgcggg attttatgct gccttggttg ggatatgtgg tcaccaagcc caagctgatc 1261 aacgatgtgg tgcgcgagga tctgtggaat gccatacaga agatacacga acgggccacc 1321 cgaatggacg ccgccaagat catagccgtg gacatggtca accgggtgac ggtgcatctg 1381 gagaagattc gcattgcgga ggccagagca gccgaaacca acacgccgcc cgttttcagt 1441 acgaatccgt atctcgccga cgaggagaag gagatggagt tcctgcgcaa gctgtgcgag 1501 attatggtga ttctgctgct gccccgcggc tactcgctgc cgcccttgaa ggtgctgctc 1561 agcgagattc tctcctacaa gattttcttt ccgatgatca aaatgctcac ggcaccggac 1621 tacattaacc agaaggtggt gcagaacatc gaaacccgcc tggcggcggc ggcgatgagc 1681 aagcggagct acgagtacgc ggccagcttc gaggacttcc tgaagatcat caacaactcg 1741 ggcaacctcg aggagctctc gctcatccgc aagagcattg tgaacgacct gatgcatgcg 1801 acgaccatgc agaacctgca gcgtgccaaa ggcctcgatc ccgatcacga ggaccactcg 1861 ctctccaagt cggagctcac ggccgccgtc cggctgaagc gctacgttcg ccagctgacg 1921 atggccaagg gcgagtgcga gaagaacctg gccaagttcg gctggaatgg caactactcc 1981 agcgatacag acctaacgct cgtcgagatc ctcaacactg cggtgggccg tcgctacttc 2041 accctgttcc tggagcctct aaaggcgagc gccctgatcg gcttctattt ggccgtggag 2101 gaaatcaagc acgcgcacaa gtcggccagc catcagctgg gcaccgagat cttctacact 2161 tacatccggg tgcccaagtc ggagatccag atcgacaagc acgagcgcaa gctgatcgag 2221 acgttcctgc tgggcgacgc ggatccggat attttctacg acattcagcg caatatattg 2281 cgcacgctgg aggagaaata ctatccgccc ttcgtgctga gcgaccagta tcgccagctg 2341 aaggaggcgc tggactcgaa tgagattgcg gatcccacgc tgctcatgtg ccactcgatt 2401 ggcgatgccc cgctggagcc gctggcggac gagcagccag aggcgtcgga tggtctaaat 2461 ggcggggccg gtggcgccat cgatgtggca gcccatacgt cgtatgcacg acgaaaactg 2521 gagcaaatac aggaacgcat tgacaagaag aaccaggcgc tggacgccct caagtactcg 2581 gtgaagccgg agtccaaagt actctccatt ctggagaagg agatggagtg gctgaagagc 2641 gagaagcgcc agacggaggc gcatttgcgg cgcaccgacg cctggacgga gcacctgggc 2701 aagtggaagg cgaccattca gagtgtggag gtctccgatg agaaggaatc gctgcagttc 2761 atgatcctgg tgcacgtgga cgaggacatc aatgcgccgg ctcagccgac atcctcgaaa 2821 aacggcgaca gcgggcaggc gaatctgcgc aagcgaccct cgggcatctc tagcggctgg 2881 gtggtgatgc gctccctcaa ccaagtgcat gagctacagc gaaaactgag gcatgtgagc 2941 tctaatttaa aggccattga cctgcccacg aacttcaagt tctttttcct caaaaccgat 3001 cgtcatggcc aggagaaggc caagctgcag atacagaagt tcttgaattt catcctagag 3061 gacgaccatc tgaatggcag cgaggccatc tacacgtttc taagtcccag ttcggatcac 3121 ctcaagcaat cgctgccctc gccgaagaag tccaagttct cgctggcgac gctcttccgc 3181 agcgatgccg gaaaggccgc gcacgaggcc agcagggcca cggatccctt ttgggggctg 3241 cagcgcgacg acgaggacat atccacctac ctggacggcg agtcgggagt cgaggccaag 3301 atgctggctg ccgatttgga cagcaaggat tcgatagccg aacctatgta cgccttaatg 3361 ggcgagatct tcgacatggg cggtgtgttc aagtggctgc gcaagagcct catctccttt 3421 gttcaaatca cctacggtcg gacgatcaat cgacagatcc gcgagtcggt ggcctatctc 3481 ttcgaggagt ccatgctgca caactacttc tcggccgtac tcaaatcctt ttggcccggc 3541 ggcgtcctgg cctccgccta tccgacgcga tcggaggata tgcgcgagat gaccaccacg 3601 gcggccaagg cgctgctcac cgaccacata cccgaggtgc tgtgcaatct ggtcggcgcc 3661 caggcggcca agcggggcgt cctcaaggtg ttcgaggccc tgcagaatcc cgcctacaac 3721 aagcagctct tctacgagct gctggagata ctcatgatcg agttctttcc cgaaatccgc 3781 cagctgcggg tgaacaatgc caatggcagc aagctgaaca cggccaccgc tggagcggca 3841 gctgcctccg ctgcagcggc actggtggcg gccacagcct ccgcttcgct gccctcgctg 3901 aatcacagtg cctccgcggg gggcaaccac aaccatcagg gctcctcaac gggcagtgga 3961 tcctcggcgg gaggaagtgg ctcatccgca agtggacagt cgcactatca ccacgcatcc 4021 caccaccacc accaccactc gcaggcgggc agctccaagt agcttacctt aacttaaact 4081 ttatatttta tttatgtttt tttttttcgt tcgattttat actttatgtt cgatgtttaa 4141 tgctctctct ccctttctat ttcggagaat attgttgatt tagccggaga ttagggatta 4201 caaagagtag ttacgtagga gaccacacaa ctcagtagtt accagtatca ttccctgtac 4261 aaatgcagaa tgcagattgc agatccttgt tgactcgttt gtcctgtccc ccacttcctg 4321 taggccagat tcgattgtta tttgtatgtg tatatgtctg tacataggtc agtattaagc 4381 gttgtaccaa attgttgttt atatactcgt actcgtatag tgaaaaatgt gacactcagc 4441 tttgattgat tatgtttatg attatgacta tagtttagta gcagatattg agtccaaagt 4501 tggtgcttgt gatcccccat ccgctccagc tgcggatgca gttagatttt tatctccccc 4561 gcaaaaagca aagattatag ttcacaaaac aggtgggatt ccatggccat aagccaggtt 4621 cagaggtcac aacttgtgtt gcttttgccg ttttgtttta acttgtaaaa actaagggct 4681 ttaatgatat gtattccatt tggtgatttt tgaaaggcag gattttagtt gtatgttttt 4741 aattttttaa ctttttaacc cttttcctta acaaatagtt acttttaatt atttatttgt 4801 taaacccctg tattctggaa ttaaatattg tattttaaaa cgtttcccaa ctgaccaaaa 4861 a