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PREDICTED: Drosophila takahashii ribosomal protein S6 (RpS6), mRNA.


LOCUS       XM_017142130            1015 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017142130
VERSION     XM_017142130.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017142130.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1015
                     /gene="RpS6"
                     /note="ribosomal protein S6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     Proteins"
                     /db_xref="GeneID:108057731"
     CDS             135..881
                     /gene="RpS6"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS6"
                     /protein_id="XP_016997619.1"
                     /db_xref="GeneID:108057731"
                     /translation="MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDE
                     WKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIV
                     DANMSVLALVVLKKGEQDIAGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRR
                     PLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQTASKEAAADYAKLLVQRK
                     KESKAKREEAKRRRSASIRESKSSISSDKK"
     misc_feature    135..800
                     /gene="RpS6"
                     /note="Ribosomal protein S6e; Region: Ribosomal_S6e;
                     cl00931"
                     /db_xref="CDD:469996"
     polyA_site      1015
                     /gene="RpS6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcaactatcg ataggcacca ctacaacccc atcccccatc gctacttcct ccaatcggtc
       61 ttttccaacc ctgcgctggc agccagtaga ccgattcttt ttttttctgc gttgcgtgca
      121 aacagttcga caatatgaag ctcaacgttt cctatcccgc gacgggatgc caaaagctgt
      181 tcgaggtggt cgacgagcac aagctgcgtg tcttctacga gaagcgtatg ggccaggtcg
      241 tcgaggccga tatcctcggt gacgagtgga agggctacca gctgcgcatc gccggcggca
      301 acgacaagca gggattcccc atgaagcagg gtgtcctgac ccacggtcgt gtgcgcctgc
      361 tcctgaagaa gggacactcg tgctaccgcc cacgccgcac tggcgagcgc aagcgcaagt
      421 ccgtgcgcgg atgcatcgtg gacgccaaca tgtccgtgct ggccctcgtg gtgctgaaga
      481 agggtgagca ggacatcgcc gggctcaccg acaccaccat cccccgccgt ttgggaccca
      541 agcgcgccag caagatccgc aagctgtaca acctgagcaa ggaggacgat gtgcgtcgct
      601 tcgtcgtgcg ccgccccctg cccgccaagg acaacaagaa ggccacctcc aaggccccca
      661 agatccagcg cctgatcacc cccgtggtgc tgcagcgcaa gcaccgccgc atcgcgctga
      721 agaagaagcg ccagacggct tccaaggagg ctgccgccga ctacgccaag ctgttggtgc
      781 agcgcaagaa ggagtccaag gccaagcgcg aggaggccaa gcgccgccgc tccgcctcca
      841 tccgcgagtc caagagctcc atctccagcg acaagaagta aatgccgcgg acacggaacc
      901 cacattcttc gtttaagcag aaactgaacg cggatcacct cgaaatgatc tgcgagagga
      961 gaaaagaaac tttgtaatca tttatgttaa ataaatgtga aaaaatggta tacaa