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LOCUS XM_017142127 5535 bp mRNA linear INV 09-DEC-2024 containing sws (sws), transcript variant X2, mRNA. ACCESSION XM_017142127 VERSION XM_017142127.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142127.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5535 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5535 /gene="sws" /note="patatin like phospholipase domain containing sws; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108057728" CDS 696..4940 /gene="sws" /codon_start=1 /product="neuropathy target esterase sws isoform X2" /protein_id="XP_016997616.2" /db_xref="GeneID:108057728" /translation="MDVLEMLRASANGGYNTLFSDAWCQYVSTQITATMYMYCALCVL GILFIAWFMYFKRLARLRLRDEIARSLSAVTSSSGGDLRGLRFRKRDKMLFYGRRMLR KMKNVSGQMYSSGKGYKRRAVMRFARRILQLRRDNMPLEMRTVEPPAEYLEETIEGSD RVPPDALYMLQSIRIFGHFEKPVFLRLCKHTQLLELMAGDYLFKITDPDDSVYIVQSG MINVYISNADGSTLSLKTVRKGESVTSLLSFIDVLSGNPSYYKTVTAKAIEKSVVIRL PMQAFDEVFQDNPDVMIRVIQVIMIRLQRVLFTALRNYLGLNAELVQNHMRYKSVSTM SGPQASQSSSSRQAVATQLNLGSGVAVTVTRPPASPSRHSREEHTLSDPNPNPDGSVP GTSNLFTEVHGDAPNADLFHQQQHSVGNLSTRRGSIGQMTPEGSQGRESAAGAPPSID MRLVQSSAVDSLRKELGLPEEDAHIIEPFVEVRELEPNVTLITEGNADDVCVWFVMTG TLAVYQSNQDATRAKQADNKSDLLIHFVHPGEIVGGLAMLTGEASAYTIRSRNNSRIA FIRRAAIYQIMRQRPRIVLDLGNGVVRRLSPLVRQCDYALDWIFLESGRAVYRQDESS DSTYIVLSGRMRSVITHPGGKKEIVGEYGKGDLVGIVEMITETSRTTTVMAVRDSELA KLPEGLFNAIKLRYPIVVTKLISFLSHRFLGSMQTRSGSGAPGAPVEANPVTHKYSTV ALVPITDEVPLTPFTYELYHSLCAIGPVLRLTSDVVRKQLGPNIFEAANEYRLTSWLA QQEDRNIITLYQCDSSLSAWTHRCMRQADVILIVGLGDRSHLVGKFEREIDRLAMRTQ KELVLLYPETTNARPANTLSWLNARPWVTKHHHVLCVKRIFTRKSQYRINDLYSRVLL SEPNMHSDFSRLARWLTGNSIGLVLGGGGARGAAHIGMLKAIQEAGIPVDMVGGVSIG ALMGALWCSERNITTVTQKAREWSKKMTKWFLQLLDLTYPITSMFSGREFNKTIHDTF GDVSIEDLWIPYFTLTTDITASCHRIHTNGHLWRYCRASMSIAGVFPPFCDYRDGHLL LDGCYTNNVPADVMHNLGAAHIIAIDVGSQDDTDLTNYGDDLSGWWLLYKKWNPFTSP VKVPDLPDIQSRLAYVSCVRQLEEVKNSDYCEYIRPPIDKYKTLAFGSFDEIRDVGYV FGKNYFENMAKAGRLGRFNQWFNKEPPKRGNHASLNEYTFIDLAQIVCRLPETYAVNT AELFSEDEDCDGYISEPTTLNTDRRRIQVPRAGNSLSFSETELDSDVELDLQLERKTD KSTQSTPPATSRTSLRGKEEARHKEDHHRDRDWHWGAKHKDATDGGPSAAAGQTLTEQ EQQQQELQDQGARTEQLVDKDEDKENRSSANNETKN" misc_feature 1218..1583 /gene="sws" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:237999" misc_feature order(1437..1442,1467..1475) /gene="sws" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(1542..1550,1560..1568) /gene="sws" /note="flexible hinge region; other site" /db_xref="CDD:237999" misc_feature 2094..>2480 /gene="sws" /note="cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:440428" misc_feature 2508..2807 /gene="sws" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:237999" misc_feature order(2670..2675,2700..2708) /gene="sws" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(2766..2774,2784..2792) /gene="sws" /note="flexible hinge region; other site" /db_xref="CDD:237999" misc_feature 3453..4370 /gene="sws" /note="Patatin-like phospholipase domain containing protein 6 and protein 7; Region: Pat_PNPLA6_PNPLA7; cd07225" /db_xref="CDD:132864" misc_feature order(3519..3524,3528..3530,3603..3605,3963..3965) /gene="sws" /note="active site" /db_xref="CDD:132864" misc_feature 3597..3611 /gene="sws" /note="nucleophile elbow; other site" /db_xref="CDD:132864" polyA_site 5535 /gene="sws" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctcaaaatg aatgctatcg attgggcaaa aacagagtgc atttgagttt attagttgta 61 gtttatatag caaaatgctc gtctttttcg gctcactaaa ttaaggaagt tctcgttgca 121 cgctgccacg ccccccaccc gtaacagcca accacccccg ccaccgcctg aaagcagaga 181 gagcgagaca gaacgagaga gagagggaca agaagcaaca acaacacgta aagaaaacga 241 aagatttcca tttccgcaag gaaggaagca gcaacaaaaa caacaattcg gtgattctcg 301 taacggcaaa aacaacaaga gaataaatcg aaataataaa aagaactgtg ctctctggcg 361 ttgtgcgtgc gtgtgtgtgt gtctgtgtgt gcggtgcgtg cattacaata attgcacaaa 421 attcaagaca accgtggggc gggggtgtcc gtaagtgtga gtgcgacaga gcgcgacaga 481 gaaagagtga cggcaacaac aaagggctgt gatttttggc cccctccccc gccccctctt 541 cacagtattt accaaataaa cgggacatac ataagtctta acagacagag aaacaaaaac 601 aacagaacaa caaatcgaat agtttggaga ggagagagag agtgggagag ctggaaaact 661 aaagctggca gcgtaacaga gagtgagaga gcgcaatgga tgtcctggaa atgctgcgcg 721 ccagcgccaa cggcggctac aatactctct tctcggacgc ctggtgccag tacgtttcca 781 cgcagatcac agcaacgatg tacatgtact gcgctctgtg cgtcctgggc atcctgttca 841 tcgcctggtt catgtacttc aagcgactgg cgcgtctgcg gctgcgcgac gagattgccc 901 gctcgctgag cgccgtcacc tcctcatccg gcggcgattt gcgcggcctg cgcttccgga 961 agcgggacaa gatgctcttc tacggccgcc ggatgctgcg caagatgaag aacgtcagcg 1021 gtcagatgta cagcagcggg aagggctaca agcggcgggc ggtgatgcga ttcgcccgcc 1081 gaatccttca gctgaggcgg gacaatatgc cgctcgagat gcgcacggtg gagccgccgg 1141 cggagtatct ggaggagacc atcgagggca gcgatagagt gccgcccgat gcgctctaca 1201 tgctgcagag catccgcatc tttggccact tcgagaagcc cgtcttcctg cgcctctgca 1261 agcacaccca actcctcgag ctgatggccg gcgactatct gttcaagatc accgatccgg 1321 acgacagtgt ctatatcgtg cagtcgggca tgatcaatgt gtatatctcg aatgcggacg 1381 gcagcacgct gtccctgaag acggtgcgca agggcgagtc ggtgacctcg ctgctcagct 1441 tcatcgacgt gctgtcgggg aatcccagct actacaagac ggtcacggcc aaggcgattg 1501 agaagtcggt ggtgattcgg ctgcccatgc aggcctttga tgaggtgttc caggacaacc 1561 cggacgtcat gatccgcgtc atccaggtca tcatgatccg gctgcagcgc gttctcttca 1621 ccgccctgcg caactacctc ggcttgaatg ccgagctggt gcagaatcac atgcgctaca 1681 agagcgtctc cacgatgagc ggaccgcagg cctcgcaatc ctcctcctcc cgccaggcgg 1741 tggccaccca attgaatttg ggatcgggtg tagcggtgac cgtgacgcga ccacctgcct 1801 caccatcgcg gcattcgcgc gaggagcaca cgctgtccga tccgaatccc aatccggacg 1861 ggagtgtccc gggcacgagc aacctattca ccgaggtgca cggagatgca ccaaatgcgg 1921 atctcttcca ccagcagcag cactcggtgg ggaatctgtc cacgcgtcgc ggttccatcg 1981 gccaaatgac gcccgaggga tcgcagggaa gggagtcggc agcgggagct cctccctcga 2041 ttgacatgcg actggtgcag tcctcggcgg tggacagcct gcgcaaggag ctgggcctgc 2101 ccgaggagga tgcccacatc attgagccct ttgtggaggt gcgcgaactc gaaccgaacg 2161 taaccctcat caccgagggc aatgcggacg atgtgtgcgt gtggttcgtg atgaccggca 2221 ctctggccgt ctaccagagc aaccaggatg ccacgcgggc caagcaggcg gacaacaaga 2281 gcgacctgct catccacttt gtgcatcccg gcgagatcgt tggcggcctg gccatgctga 2341 cgggcgaggc gagtgcgtat acgattaggt cgcggaacaa cagcaggata gccttcatcc 2401 gaagggcggc catctatcaa atcatgcgac agcgaccgcg catcgttttg gatctgggca 2461 atggagtagt gcgccgttta tcgccgctgg tgaggcagtg cgactacgcc ttggactgga 2521 tattcctgga gtctggaaga gctgtctatc ggcaggacga gagcagcgac agcacgtaca 2581 ttgtgctgag cggacgaatg cgttcggtga tcacgcatcc cggcggcaag aaggagatcg 2641 tcggcgagta cggcaaggga gatctcgtgg gcatcgtcga gatgatcaca gagacgtcgc 2701 gcaccacgac ggtgatggct gtgcgcgact cggagctggc caagctgccc gagggcctgt 2761 tcaatgccat caagctgcgc taccccatcg tggtgaccaa gctgattagc ttcctcagcc 2821 accgcttcct cggctcgatg cagacgcgct cgggcagcgg ggcgccgggc gcgcccgtcg 2881 aggccaatcc cgtcacgcac aagtactcca cggtggccct ggttcccatc accgacgagg 2941 tgccgctgac gcccttcacc tacgagctct accactcgct ctgtgccata ggacccgtcc 3001 tccgtctcac ctccgatgtg gtgcgcaagc agctcggccc gaacattttc gaggcggcca 3061 acgagtaccg gctgacctcg tggctggccc agcaggagga tcgcaacatc atcaccctgt 3121 atcagtgcga cagttcgctg agcgcctgga cccatcgatg catgcgccag gcggacgtca 3181 tcctgatcgt gggcctcggc gatcgatccc atttggttgg aaagttcgag cgcgagatcg 3241 atcggctggc gatgcgaacg cagaaggagc tggtcctgct ctacccggag acgaccaatg 3301 cccggccggc gaatactctc agctggctga atgcccggcc ctgggtgacc aagcaccacc 3361 acgtcctctg cgtcaagcgc atctttacgc gcaaaagtca ataccgcatt aatgatctct 3421 acagtcgcgt cttgctctcc gagccgaaca tgcattccga cttctcgcgt ttggcccgct 3481 ggctgacggg caactcgatt ggccttgtgc tgggcggcgg tggggcgcgc ggtgccgccc 3541 acattggcat gctgaaggcc atccaggagg cggggatacc cgtcgacatg gtgggcggcg 3601 tcagcatcgg tgctttgatg ggagcactgt ggtgctcgga gcgtaacatc accacggtta 3661 cgcaaaaggc gcgcgagtgg tcaaagaaaa tgacgaaatg gttcctacaa ctactggacc 3721 tcacctaccc gatcacatcg atgttctccg gacgggagtt caacaagacg atccacgaca 3781 cctttgggga tgtgagcatc gaggacctgt ggatacccta cttcaccctc accaccgaca 3841 taaccgccag ttgccatcgc attcacacca atggacacct gtggcggtac tgccgcgcca 3901 gcatgtcgat tgccggcgtc ttcccgccat tttgtgatta ccgcgacggc cacctgctgc 3961 tcgatggctg ctacacgaac aacgtgccag ccgatgtgat gcacaatctg ggggctgctc 4021 acataatcgc catcgatgtg ggatctcagg acgacaccga cctcactaac tacggcgacg 4081 acctgagcgg ctggtggctg ctctacaaga agtggaatcc cttcacgtcg cccgtgaagg 4141 tgcccgacct gccggacatc caatctcgtc tcgcctacgt gtcctgtgtg cgccaactgg 4201 aggaggtcaa gaactccgac tattgcgagt acatccgacc gccgattgac aagtacaaga 4261 ccctggcctt cggcagcttc gacgagatcc gcgatgtggg ctatgtgttc gggaagaact 4321 acttcgagaa catggccaag gcgggtcggc tgggccgctt caaccagtgg ttcaacaagg 4381 agccacccaa gcggggcaac cacgcctcgc tcaacgagta cacgttcatc gatctggcgc 4441 agatcgtgtg ccggctgccg gagacgtacg cggtgaatac ggcggagctc ttcagcgagg 4501 acgaagactg tgatggctac atttcggagc caacgacgct caatacggat cgacgacgca 4561 ttcaagtgcc gcgcgccggc aactcgctgt ccttctcgga gaccgaactg gattcggacg 4621 tggagctcga tctgcagctg gagcgcaaga cggacaaatc cacgcagtcg acgccgccgg 4681 cgaccagcag gacgagtttg cgcggcaagg aagaggctag gcataaggag gatcatcatc 4741 gtgatcgcga ctggcactgg ggagcgaagc acaaggatgc gactgacggc ggaccctcgg 4801 cagccgccgg acagacgcta actgagcaag agcagcagca gcaggagctg caggatcagg 4861 gcgcgagaac ggagcagctg gtcgacaagg acgaggacaa ggagaacagg agcagcgcga 4921 ataacgaaac caaaaactag ctatatagac aagccacatc gaggcgggat atctactcaa 4981 cagaatgcag caacaagccg aggacgacca ggtgccttcc gcttgcccga cgcccaacag 5041 cccaacggtc caacggccac cacattacca agaaaccaag aaaccaacca caaactactc 5101 aaactcaatc atccaatctc caacgaaaca aactaaatag caatgacaag gaaatttgtt 5161 aacctctagg ttttatagca accaagactt aggcttagct tagcatatgg aatgatccca 5221 tcccaatcaa tcctcattca cctcacacac accccacaca caccacacac attgtaatgg 5281 aggcacaaca agtccacaaa ctttgtatat acatatagtt atatattttt actgaagcaa 5341 ccgatattgt agccacgtag ccacgaaact gagactcctt tgcaatgaag cccccaacaa 5401 agtcccgccc cctatttgcc gcacacttgt gtagtctctc tattaattta ggtaagcaaa 5461 tcgtttgttt aatggtcgga ttttttttgt aaatgcaagc aaataaattt aaacaattga 5521 aagtacaaaa gcaaa