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LOCUS XM_017142116 8499 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017142116 VERSION XM_017142116.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017142116.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8499 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8499 /gene="Ubr3" /note="Ubr3 ubiquitin ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108057723" CDS 961..7632 /gene="Ubr3" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3 isoform X1" /protein_id="XP_016997605.2" /db_xref="GeneID:108057723" /translation="MDEDDNLSNADISIDDEEAAEERPQDAAMQQDQQEDDESSDVDL SSVYVLPPIVSSMPAVRISGGTTTTTTSAAAAPATAADNSHSPFHDWDSSVAAAAPPP PPPRGATAAAASSSESGAAGASGGASGPGAAASDAGAKPSFFFGASSFSLRSRKEVAA LINTECCRGSPTPDLDSIMDTLFNPGTPIDNLDNIEWIRWLIAGGRTPQEFVKIVRSY DNHAKCGLVWVPHVVAYRCRTCGISPCMSICRDCFKKGNHTNHDFNMFLSQAGGACDC GDTSVMKAEGFCSDHGINNRVNRDPVPNNLLAVAEAIMPKLLFRLLQHFREHSDTALQ VHAMTSYSCEEFANMLIDLNNMGEIMRKVMTRTLINPEVYAYFMEAPCQDTRNGRFLK ANREKYEDAVNRFPNPEPPDEYRDLPALGDKLVHTTLLEEFIFWTFKFEFPQTLVCFL LNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSRDPDTLSNRVVHMSVQLFSNESLALKM VNELSLLHVMIISLKLMMSKILIQNTLHDPSKNFHFVIDCTRQVMKDHCYWPLVSDFN NVLSHESVALVFLRDDNLIDMWFQFLQMLQGMNVNVRETASHVEFEPNSYYAAFSCEL EASAYPMWSIISHLQDGTHAHLAKKIINYCVTTLHEWLDSIYFMEARLSMEEMMQASF HFPLHRYLAAFVCQAVTKMGISLNDVLPSRPYLLPLLMIHPLRVQSFFYEILAGKWVR NGLQIKGQAMTYIQANFCNSMADMDLFFLQICATNLPQYFFLQNTIELFDVGQWLETA PLKQPQKAEQSSMLEGFLTFLATLVTSRTNLGNDEATQCIIEISALLATENKTHSQLL ELMPERSGNVHTKNFETFLKKLSVYKAPSSGSENLEQGLFTPIDEVWEKHYDPLHVLL RAVHRRDFQSSLDRFTNYVKSKEKMPASGNLWPPFRLPQALPATSSFSDPCKILNSRV FHSTILSIFFRAVHTRDVSEHLLALAVFLLEIAVETSDDVGSGPGDRAPPALAAMVES SGGPGYHGYGSGRQEPPKLFQCYPTDNLSCNLRHVVKKVSLKSRDPQVITSSYRSNPF YSDLDFDVEADPESQSMRMIGHVDSEGDEATGGGGGGGGVANLGPGTLSRRNVSQALV PMRVPGMEVALPPDLSVVAETGVVIRQDSNDDELLREGDHAMDMSPAAALDFHFPLQQ ITLPESGMEVAIRRDLLLAETNNMGAIGGGGGGGGANPSATTPGVASNEMFSPTTPTG SGMLLPFQRVQPVAVPSSSVNMDIVPSNALGAGGSFTSGVSGGGGGTGRRMNYETGGA RKRSVDIAIGGSNKDELHLDESILSLLLKLHSQLSGTLDSFSLSDGEEQSQSGEDSSS MDVDCNEASTSSTALAERGRSRRKNYKNIHVSASRIGDGPFFIGNLLRKIAKQDEQCA LSIDDIRARLWPNQRERQAEAKARETKEKEERRKKARERQQKMMQDFANKQKQFMQSA AAAASSMDYGPEDEDDEELLYEEQPREKEYDCIICNCTTPSTESNPIGLVVLVESSGI VGHRRRIAERLPLPLNVEDEDRLRHSTRLAAEFGRRTELLSLKFGDESWYLSNNMAYD NGVHVQSCGHHVHLSCLEAYLKTLYTTQRQPVQDRGEFYCPVCRQLSNSVLPLSPQLD RPTHIVRSGNQPFERLVADLTDLIKENETIPQPTKLTEAMGHAMEVMTNIAQRKVKYA SITFRKLFIFVTSIARTNLEAEIIQRGGSLCSANATRYKPKRDCIVPLLHVLSVHVRV LVEWPLWSSWASLAGLPVSETEPLPAHCLELIPSLLADPIALLLKFILLAPLHLDQDY FTCMVKVMYNLLYYQIVVQLCVTLTDLECDHILKVYGSSGAESQPESAAGASGSSYNR RRAGSQQQSSSQLGKAMALVLSQTNELAHLRRDCIPSTSSSAAAAAAAGSSSASATAT SSSSASSSPHEVNLKSMELQLQSLCLPFLRVAALLRQHLYRHEMPEISAPGLEFVRLV YYLELVTDSMDWDCFNASKGLCFIPGTEQTLPQFWCQQLMEVRPPADTVRELVLINQH SLWQQPRLLELPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAEND CCEAVRHTLSCGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPL YLSQDRFNLLESQWLSHKFAHTKHTWVFHRDLL" misc_feature 1630..1836 /gene="Ubr3" /note="UBR-box found in ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar proteins; Region: UBR-box_UBR3; cd19673" /db_xref="CDD:439071" misc_feature order(1630..1632,1678..1680,1705..1707,1714..1716, 1732..1734,1780..1782,1786..1788,1822..1824) /gene="Ubr3" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:439071" misc_feature 5044..5394 /gene="Ubr3" /note="Eisosome protein 1; Region: Eisosome1; pfam12757" /db_xref="CDD:432763" misc_feature <5230..>5436 /gene="Ubr3" /note="Trichohyalin-plectin-homology domain; Region: TPH; pfam13868" /db_xref="CDD:464007" misc_feature 5794..5946 /gene="Ubr3" /note="RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar proteins; Region: RING-H2_UBR3; cd16483" /db_xref="CDD:438146" misc_feature 6157..7578 /gene="Ubr3" /note="Proteolysis_6 C-terminal; Region: PRT6_C; pfam18995" /db_xref="CDD:465944" polyA_site 8499 /gene="Ubr3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcccagctc taattcatat acacatacac gcgaacggac cgtgtgtgga ttcgtggagc 61 aaatcgaaat tggcaggatt aaaagcattc gcgaacgcaa aggcagcggc taaagggctg 121 cccacgcacc agagtaacta actagctggc caagaggtcc tctaatcggc gattaatatg 181 caaaaatcag cgtaattggc aagttcaatg cacgactaat atatttggtg tgccagtgtt 241 gtgtgtgcgt gtggtgtggt gtcgtgtccg tgtgtgtgtg cgtgtgcggc cgcgacgagt 301 atgtgtgcgt atattcgtat atttgcaaga ctcgcggatg aaacagcgtg aaaagtgagc 361 gaaatcggga aatcgggaaa acgggcggcc aaagaactct aaatcctcgc tctgaaaaac 421 ggacacggat gatggggata tagccccaga gccaccgcgc cacagtaggt cggttgggcg 481 acgtcgagca gcagcagcaa ggtagaaaaa aagaatcaaa catcggaaat cacaaatcaa 541 aaatcaaaag caggaacgca gctgagaagc tgagatgtca agtgtttggt gttgtgaaat 601 ttttcgtctc caactctcgg cgtagattcc ataccccccc tcccccctga cgacccagca 661 atcgaattcc ctcgcctcac ctgtcaaaat tttcaattga acgcaactct gccataaaca 721 aaaaaaaaga aataaaagtt aaattcgggc actagccaaa caacaaaaag aaaaaaatca 781 cgcagcaaag aagaagcagc agcagcagca gccgaaaaaa aagacgaaaa gaaaacttgt 841 ttgaaaaagg ccgaaacgaa agaaaaaaaa gagcagcagc agcagcagcg gcagcggcag 901 caagaacgga tcaccggatc ggagcggcga cgtcaccaaa agatacgcca ccatatcacc 961 atggacgagg atgacaacct gtccaatgcc gacatcagca tcgatgacga ggaggcggcg 1021 gaggagcgcc cgcaggatgc ggccatgcag caggatcagc aggaggatga cgagtcctcc 1081 gatgtggatc tctcctcggt ctacgtcctc ccgcccatag tctcctccat gccagcagtg 1141 cgcatcagtg gaggaaccac caccacgacc accagtgcag ctgcagctcc agccaccgcc 1201 gccgataact cgcattcccc cttccacgac tgggattcca gtgtggcggc cgctgctcct 1261 ccgccaccgc cgcccagggg agcaactgca gcggcggcat ctagttcgga atctggagca 1321 gcaggagcat ctggaggagc atctggacca ggagcagcag ccagcgatgc cggggccaag 1381 ccgagcttct tcttcggcgc ctcctccttc agcctgcgca gccgcaagga ggtggccgcc 1441 ctgatcaaca ccgaatgctg ccgtggcagc cccacgcccg atctcgactc catcatggac 1501 accctcttca atccgggcac gcccatcgac aatctggaca acatcgagtg gattcgatgg 1561 ctcattgccg gcggacggac gccgcaggaa tttgttaaaa ttgtgcgcag ctatgacaac 1621 cacgccaagt gcggactggt gtgggtgccc catgtggtgg cctacaggtg ccgcacctgc 1681 ggcatctcgc cctgcatgtc gatatgccgg gactgcttca agaagggcaa ccacacaaac 1741 cacgacttca atatgttcct gtcgcaggcg ggcggtgcct gcgattgtgg cgacacctcg 1801 gtcatgaagg cggagggctt ctgcagcgat catggaatca acaaccgggt caaccgagat 1861 cccgtgccca ataatctgtt ggcggtggcc gaggccatta tgcccaagct cctgttccgc 1921 ctgctgcagc acttccgcga gcacagcgac accgcgctgc aggtgcacgc gatgacctcg 1981 tactcgtgcg aggagttcgc caacatgctg atcgatctga acaacatggg cgagataatg 2041 cgcaaggtga tgacgcgcac gctgatcaat ccggaggtct acgcctattt catggaggca 2101 ccatgccagg acacacggaa cggacgattc ctgaaggcaa atcgggagaa gtacgaggat 2161 gccgtcaaca gattccccaa cccagagcca cccgatgagt acagggatct gccggcgctg 2221 ggagacaagc tggtgcacac cacgctcctc gaggagttca tcttctggac attcaagttc 2281 gagttcccac agacgctggt ctgtttcctg ctcaacatgc tgcccgatca ggattacaag 2341 gaacacctca cccgcacatt tgtgatgcac tacagtcgca taccgtcggt gctggaaatg 2401 tcccgcgatc ccgacacgct cagcaaccgc gtggtccaca tgagcgtcca gctcttctcc 2461 aacgaaagtc tggccctcaa gatggtcaac gagttgtcgc tgctgcacgt gatgatcatc 2521 agtctcaagc tgatgatgtc caagatactc atacagaata cgctgcatga tcccagcaag 2581 aatttccact ttgtcatcga ctgcacgcgt caggtgatga aggaccactg ctactggccg 2641 ctagtctccg acttcaacaa cgtcctatcg cacgaatcgg tggccctggt ctttttgcgg 2701 gacgacaacc tgatcgacat gtggttccag tttctgcaga tgctccaggg catgaatgtc 2761 aatgtgcggg agacggcttc ccatgtggaa ttcgagccga atagctatta tgccgcgttc 2821 tcctgcgaac tggaggccag cgcctatccc atgtggtcga ttatctcgca cctgcaggac 2881 ggaacgcatg cccacctggc caagaagatc atcaactact gtgtgacgac gctgcacgag 2941 tggctggact ctatttactt catggaggcg cgtctatcga tggaggagat gatgcaggcc 3001 tcgttccact ttccactgca tcggtatctg gccgccttcg tctgccaggc ggtcaccaaa 3061 atgggcataa gtctgaacga cgtgctgccc tcgcggcctt atctcctgcc cctcctgatg 3121 atccatccgc tgcgtgtcca gagtttcttc tacgagatcc tggccggcaa atgggtgcgc 3181 aacggactgc agatcaaggg ccaggcgatg acgtacatcc aggcgaactt ctgcaactcg 3241 atggcggaca tggacctgtt cttcctgcag atctgcgcca ccaacctgcc gcagtacttc 3301 ttcctgcaga acaccatcga gctcttcgac gtgggccagt ggctggagac ggcgccgctg 3361 aagcagccgc agaaggcgga gcagtcctcg atgctcgagg gcttcctcac cttcctggcc 3421 accttggtga cgagtcgcac gaacctgggc aacgacgagg ccacccagtg catcatcgag 3481 atcagcgccc tgctggccac cgagaacaag acgcattcgc agctcctcga gctgatgccc 3541 gagcgatcgg gcaatgtgca caccaagaac tttgagacct tcctgaagaa gctctccgtc 3601 tacaaggctc cgtcgagtgg gagcgagaac ctggagcagg gtctcttcac gcccatcgac 3661 gaggtgtggg agaagcacta cgatccgctt cacgtcctcc tgcgagcggt ccatcggcgg 3721 gacttccaat cctcgctgga tcgcttcacc aactatgtga agagcaaaga gaagatgccg 3781 gcgagtggaa atctctggcc accgttccgc ctgccgcagg ctctgcccgc caccagctcg 3841 ttcagtgatc cctgcaagat tctcaactcg cgcgtctttc actccaccat tctgtcgata 3901 tttttccgtg ccgttcacac gcgtgatgtt tcggaacatc tgcttgcatt ggccgtattt 3961 ctactggaga ttgccgtgga gacgagtgac gatgtgggca gtggtcccgg tgatcgtgct 4021 ccgcctgccc tggctgccat ggtggagtcg tcgggcggac cgggctacca tggctacggt 4081 tcgggtcgcc aggagccgcc caagttgttc caatgctatc ccacggacaa tctcagctgc 4141 aatctgcggc atgtggtcaa gaaggtgtcg ctcaagtcac gcgatccgca ggtgatcacc 4201 tcgagctatc gctccaatcc gttctactcg gatctggact ttgatgtcga ggcggatcca 4261 gagtcgcaat cgatgcgcat gataggccac gtggactccg agggagatga ggccaccggc 4321 ggtggcggtg gtggtggtgg cgtcgctaat ctgggaccgg gaaccctcag tcgcaggaat 4381 gtctcgcagg ctttggtgcc gatgcgtgtg cctggcatgg aggtggctct gccgccagat 4441 ctttccgtgg tcgccgaaac gggcgtggtg atccggcagg acagcaatga cgatgagctg 4501 ctgcgcgagg gcgatcatgc catggacatg agtccggcgg cagccctcga tttccatttc 4561 ccgctgcagc agattacgct gcccgaaagc ggaatggagg tggccattcg gcgggatctt 4621 ctcctcgccg agaccaataa tatgggggcc atcggagggg gaggcggagg cggaggagcc 4681 aatccttcgg ccacaacacc cggcgtggcc tccaacgaga tgttctcacc caccacgccc 4741 acgggcagcg gtatgctgct gcccttccag cgggttcagc ccgtcgcggt gccctcaagt 4801 agcgtcaaca tggacattgt gccctcgaat gccctgggcg ccggcggaag cttcacctcg 4861 ggcgtgagtg gcggcggcgg cggcacggga cgcaggatga actacgagac gggcggagcg 4921 cgcaagcgat cggtggacat tgccatcggc gggagcaaca aggatgagtt gcatttggac 4981 gagagcattc tgtcgctgct gctcaagctg cattcccagc tctcgggcac cctggatagc 5041 ttctcgctga gcgacggcga ggagcagtcg cagtctggcg aggattcttc ctccatggat 5101 gtggactgca acgaggcgag cacctcgagc accgctttgg ccgaacgagg acgcagcagg 5161 cgcaagaact acaagaacat ccatgtatcc gcctcgcgca tcggcgacgg gcccttcttc 5221 attggcaacc tgctgcgcaa gatagccaag caggatgagc agtgcgccct cagcatcgac 5281 gacatccggg cgagactctg gcccaatcag cgcgagcggc aggcggaggc gaaggcgcgc 5341 gagaccaagg agaaggagga gcgacgcaag aaggcgcgcg agcgacagca gaagatgatg 5401 caggactttg ccaacaagca gaagcagttc atgcagtccg ccgccgcggc ggccagcagc 5461 atggactacg ggccggagga cgaggatgac gaggagctgc tgtacgagga gcagccgcgc 5521 gagaaggagt acgattgcat catctgcaat tgcacaacgc cgagcaccga atcgaatccc 5581 atcggcctgg tggtgctggt cgagtccagc ggcattgtgg gccatcggcg gcggatcgcc 5641 gagcgactgc cgctgccgct gaatgtggag gatgaggatc ggctgaggca cagcacccga 5701 ctggccgccg agtttggtcg gcgcaccgag ctgctgagcc tcaagttcgg cgacgagtcg 5761 tggtatctgt cgaacaatat ggcctacgac aatggggtgc atgtgcagtc gtgcggccac 5821 cacgttcatc tcagctgcct ggaggcgtac ctcaagacgc tgtacaccac ccagcggcag 5881 ccggtgcagg atcgcggcga gttctactgt cccgtctgcc ggcagctttc caattcggtg 5941 ctgccgctca gtccgcagct ggacaggccc acgcacattg tgcgatcggg caatcagccc 6001 ttcgagcgcc tcgtcgccga cctcaccgat ctgatcaagg agaacgaaac gataccgcag 6061 cccacaaaac taaccgaggc catgggccat gccatggagg tgatgaccaa catagcccag 6121 cgcaaggtca agtacgcctc gatcacgttc cgcaagctgt tcatcttcgt cacctcgata 6181 gcgcgcacga atctcgaggc ggagatcatc cagcggggcg gctcgctctg ctcggcgaac 6241 gcgacgcgct acaagccgaa gcgggactgc attgtgccgc tgctgcacgt gctttcagtg 6301 catgtgcgcg tcctggtcga gtggccgctg tggagcagct gggcctcgct ggccggcctg 6361 ccggtgagcg aaacggagcc gctgccggcg cactgcctcg agctgattcc cagcctactg 6421 gccgatccca ttgcgctgct gctcaagttt attctgctgg ctccgctcca cttggatcag 6481 gactacttca cttgcatggt gaaggtgatg tacaacctgc tgtactacca gattgtcgtc 6541 cagctgtgcg tcacgctcac cgacctggag tgcgatcaca ttctcaaagt ttacggcagc 6601 agtggcgctg aatcgcagcc agaatccgct gccggagcct cgggcagctc gtacaatcgt 6661 cgccgtgctg gcagccagca gcagagctcc tcgcagctgg gcaaggccat ggccctggtg 6721 ctcagccaga ccaacgagct ggctcacctg cgacgggatt gcatacccag caccagcagc 6781 tcggcggcgg cagcagcggc agctggctca tcctccgcct cggcaacagc tacctcctcc 6841 tcctccgcat cctcctcgcc gcacgaggtc aacctcaagt ccatggagct gcagctgcag 6901 tcgctttgcc tgcctttcct gcgcgtggcc gccctgctgc gccagcatct ctatcgccac 6961 gagatgccag agatctcggc gcctgggctg gagtttgtgc gtctggtcta ctacttggaa 7021 ctggtcaccg attcgatgga ctgggattgc ttcaatgcca gcaagggact gtgcttcata 7081 cccggcaccg agcaaacgct gccgcagttc tggtgccagc agctaatgga agtgcgtccg 7141 ccggcggata cggtcaggga attggtgctc atcaatcagc actcgctgtg gcagcagccg 7201 cgacttcttg agctgccgcg cgagtacgaa cgcttgttca cgtactacca cgaacgaccg 7261 tgcctcaact gctacaaagt gcccaaggag agctccatct gcctgctgtg cgggacgatc 7321 gtgtgcctca agcagaactg ctgtgcggag aacgactgct gcgaggctgt gcggcatacg 7381 ctttcgtgtg gcggcggcat tggcatcttc ttggtggtca cctccacgta catcatcgtt 7441 atccgcggac gacgagcctg cctctggggt tcactctatc tggacgactt tgatgaggag 7501 gatcgcgatc tcaagcgcgg caagcctttg tatttgagcc aagatcgctt caacctgctc 7561 gagtcgcagt ggctgtccca taagtttgct cacacaaaac acacctgggt gttccaccgg 7621 gatctcttgt gaaatatgga agatctactg cgcagcatcc aggagttggt tggccagatc 7681 tgagatgccc gatgggatgc ccggccgctc ctcgcctagt cgaaccagtc aaccacccgc 7741 aactgacaca aatccaaaat cccacacccc ttttgtcccc ttattttaag cgagtttcgc 7801 tgttgtttcg gagcttcttg acgcggagga ggagtagtag gacacccgac cacgttctgt 7861 ccgctttccc tttgggtatc caagtccgta tacgcatccg catccctccc ccaacacaca 7921 gcccccaacg cacctagaag caacatcggc aatttgcaat taattgatat tacacacaca 7981 tttttatata taaacaatac ttataaatat ggatgcaaaa cgaaaaacca cagctaaaag 8041 attatttctt gttcaactga gaagcgcgcc taataatcca aaatccgact aatctcgcga 8101 ggatcatgaa tatttaacaa gctataaata tttaaatatg cacccgaaga cgaagaataa 8161 aacccgaaga taaatcgaaa tttaagcacc gcgcgggtct ctctagttgc gttctaccta 8221 aactaagtct taagtcccta actttatagg tttttttttt taggaaaaca aaggcaagaa 8281 ggaaaataac aatttaacga atgtaacaca acacacacga tataaataac aattgtctac 8341 tttggcctca tgagtttgtg catgtaaaaa atgaaaaaaa cgattatata gttaatatat 8401 ataaatacaa tatacactaa aattaatgct acaaaaacga caaaaaaaaa atatttaaaa 8461 aaaaaaccaa taaacgaaaa gcgaattgtg aaatgcgta