PREDICTED: Drosophila takahashii Dehydrodolichyl diphosphate

LOCUS       XM_017142109            1341 bp    mRNA    linear   INV 09-DEC-2024
            synthase subunit (Dhdds), mRNA.
ACCESSION   XM_017142109
VERSION     XM_017142109.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017142109.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1341
                     /gene="Dhdds"
                     /note="Dehydrodolichyl diphosphate synthase subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins"
                     /db_xref="GeneID:108057717"
     CDS             137..1039
                     /gene="Dhdds"
                     /codon_start=1
                     /product="dehydrodolichyl diphosphate synthase complex
                     subunit DHDDS"
                     /protein_id="XP_016997598.2"
                     /db_xref="GeneID:108057717"
                     /translation="MSWVSDYKYTWTERLALRTLRACGHIPHHVAFVMDGNRRFARSQ
                     QIDKIEGHSRGFEKLADCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLAREKF
                     ARLLDETTRLNEHGIRIRVIGNIELLPLDLQKLVASAMLSTERNDKLFLNVAFAYTSR
                     DEITQAVETVLRHGSQDLGAADISERLLEECLYTRHSPPPDLVFRTSGETRLSDFMMW
                     QLSTSVLYFSNVLWPQITFWHFLASILAYQRDRWQLEDFRRAERMQSYQLAKTSDFYS
                     ERVQKFLATIDEDRRKLLVRLAAN"
     misc_feature    221..883
                     /gene="Dhdds"
                     /note="Cis (Z)-Isoprenyl Diphosphate Synthases; Region:
                     Cis_IPPS; cd00475"
                     /db_xref="CDD:259850"
     misc_feature    order(236..253,278..280,290..292,302..304,311..313,
                     368..370,392..394,404..406,425..430,437..439,593..595,
                     749..751,767..769,773..775)
                     /gene="Dhdds"
                     /note="active site"
                     /db_xref="CDD:259850"
     misc_feature    order(614..619,623..628,635..640,683..691,698..700,
                     731..733,764..778,785..793,797..811,815..817)
                     /gene="Dhdds"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:259850"
     polyA_site      1341
                     /gene="Dhdds"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ccaccgatag ccccgcaatc gataggcgag ggcccgacgg tgtcacagct ctaatcacaa
       61 gacacccaaa aaataaataa atatatccca atattataac caccgaacct gcacaatagc
      121 ggagcaccca aaggccatgt cgtgggtctc cgactacaag tacacctgga cggagcggct
      181 ggcgctgcgg acgctgcgcg cctgcggcca cattccgcac cacgtcgcct tcgtgatgga
      241 cggcaatcgg cggttcgccc gctcgcagca gatagataag atcgagggcc attcgcgggg
      301 cttcgagaag ctggccgact gcctgcgctg gtgcctggac gtgggcgtcc gcgaggtgac
      361 cacctttgcc ttcagcatcg agaacttcaa gcgctccaac gaggaggtcg agggtttgtt
      421 caatctagcc cgcgagaagt tcgcccggtt gctggacgag accacccggc tgaacgagca
      481 tggcatccgc atccgggtga tcgggaacat cgagctgctg ccactggatc tgcagaaact
      541 ggtcgcctcg gccatgctga gcacggagcg caatgacaag ctcttcctga acgtggcctt
      601 cgcctacacg tcgcgcgacg agatcacgca ggcggtggag acggtcctgc ggcacggcag
      661 ccaggatctg ggcgccgcgg acatcagcga acggctgctg gaggagtgcc tctacacgcg
      721 gcactcgcca ccaccggact tggtattccg cacctccggc gagaccaggc tgagcgactt
      781 catgatgtgg cagctaagca cctccgtgct ctacttcagc aacgtcctgt ggccgcagat
      841 caccttctgg cacttcctgg ccagcattct ggcctaccaa cgcgaccgct ggcagctgga
      901 ggacttccgg cgagccgaga ggatgcagag ctaccagctg gccaagacga gcgacttcta
      961 cagcgagcgg gtgcagaagt tcctcgccac catcgacgag gaccgaagga aactactcgt
     1021 ccgactggcc gccaattaac gtccttaaac tccctccgat ttcagcatat cgtcgtttgt
     1081 gatatgactg gggaataaat ccgtgtaaat aacatttatg tatgtacagc tgcgactgac
     1141 ttgcagcctc cttaacaagg ttttcacatg gaaataggtg ttccgttgga gattccttca
     1201 cttaatgcac ttgtttaaga cattcaactc atgatttgtg gccgaaatgt gcgcttacct
     1261 agattatttg caattttcag ttttaaaata agtaccacaa agtgtttgcc cttcgtttgg
     1321 ttagtaaatt ataaaacaga a