PREDICTED: Drosophila takahashii asperous (aspr), transcript

LOCUS       XM_017141494            1660 bp    mRNA    linear   INV 09-DEC-2024
            variant X2, mRNA.
ACCESSION   XM_017141494
VERSION     XM_017141494.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017141494.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1660
                     /gene="aspr"
                     /note="asperous; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins"
                     /db_xref="GeneID:108057293"
     CDS             115..1440
                     /gene="aspr"
                     /codon_start=1
                     /product="adhesive plaque matrix protein 2 isoform X2"
                     /protein_id="XP_016996983.2"
                     /db_xref="GeneID:108057293"
                     /translation="MQLLLVALVAVAIGSLPQLAVGKKIEKRCVNCTYRTYYTYGDGR
                     SLQRVVYRDPVYTRAQQSYSSGCSGNPCGVNAVCQEASGGRPVCSCPPGFSGNPLTHC
                     NRGECLDNVDCRGDLQCKDNRCVNPCVGACGIGSNCDARNHVAVCSCPAGYNGDPYHA
                     CHLNDPEEQCHPSPCGVNTKCEIINGVPTCSCNHGYVGNPLSGCRHECDHDGDCSGRD
                     MCSTNFKCVPACGQCGTGATCRTVSNHRAVCECPKGYIGSPYTECRPECYGDADCPAG
                     RPACFYGICKNTCEGACGIGADCNLRGLTPVCSCPRDMTGDPFVRCRPFTKEDLCDPN
                     PCGNNAICVPGHDNTGRERPVCNCLPGHTGNPLSHCSRGECLSNNECPDHRACINYQC
                     IDPCIGKCATGASCEPKAHLAVCRCPQGQSGDALVSCRQTRTFPVAKYH"
     polyA_site      1660
                     /gene="aspr"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acattaccca gtgaaaaaac ggaaccattt acgaatttat atattttttt tgttttttat
       61 tttacgttgt ttatttgctg tagtgcgagt gagttctaag aacttaaccc aaaaatgcag
      121 ctcctcctcg tggcactggt ggcggtggcc attgggtcct tgccccaact agccgtaggt
      181 aaaaagatcg agaagcgttg tgtgaactgc acatatcgta catactacac atacggcgat
      241 gggcgatccc tgcagcgggt tgtctataga gatccggtct acacacgtgc ccaacagtcg
      301 tacagcagcg gatgcagcgg gaatccgtgc ggcgtgaatg ccgtgtgcca ggaggcctcc
      361 ggaggacgtc ctgtttgctc ctgcccgccc ggattcagcg gtaatccgct cacccactgc
      421 aatcgcggcg agtgcctgga caacgtcgac tgccggggcg acctgcagtg caaggacaat
      481 cgctgcgtta atccctgcgt gggtgcctgt ggcattggct cgaattgtga cgcccgcaac
      541 cacgtggccg tgtgcagctg cccagcgggc tacaatggcg acccctatca cgcctgccac
      601 ctcaacgatc cggaggagca gtgccatccg agtccttgcg gcgtgaacac caagtgcgag
      661 atcatcaacg gcgtgcccac ctgttcgtgc aaccatggct acgtgggcaa tccgctgagc
      721 gggtgtcgcc atgagtgcga ccacgacggc gactgcagcg gccgggacat gtgctcgacc
      781 aacttcaagt gcgttccggc ctgcggacag tgcggcactg gcgccacctg ccggacggtc
      841 agcaaccacc gggcggtgtg cgagtgcccc aagggatata tcggcagtcc ctacacggag
      901 tgccggccgg agtgctacgg agacgccgac tgtcccgccg gacgacccgc ctgcttctac
      961 ggcatctgca agaacacctg cgagggagcc tgcggcatcg gggccgactg caacctgcgc
     1021 ggcctgacgc ccgtctgcag ctgtccgcgg gacatgaccg gcgacccctt cgtccgctgc
     1081 cgacccttca ccaaggagga tctctgcgac cccaatccgt gcggcaacaa cgccatctgc
     1141 gtgcccggcc acgacaacac cgggcgggag cgacccgtct gcaactgcct gccgggacac
     1201 accggcaatc cgctgagcca ctgcagccgg ggtgagtgcc tgagcaacaa cgagtgtccc
     1261 gaccaccgcg cctgcatcaa ctaccagtgc atcgatccct gcatcggcaa gtgcgccacc
     1321 ggtgccagtt gcgagccaaa ggcccatttg gcggtctgtc gctgtccaca aggacaatcg
     1381 ggcgacgctt tggtgtcctg ccgccagacg cgcaccttcc cggtggccaa gtaccactag
     1441 ggaggattcc ggaggaggag tcccgatgca gccgcactgc ctgccagtcc cttagtcacc
     1501 tttcgtccct gcctcaacct gcacaccagt ctatctgttc gtcccctcga attcgccttc
     1561 ttcccatact agtcgttgca ttaacctcgt actctctctc taatcgaagc gaacaaaaat
     1621 gtgttgacaa caatcaataa tacaagtaaa cattaaacaa