PREDICTED: Drosophila takahashii asperous (aspr), transcript

LOCUS       XM_017141493            1663 bp    mRNA    linear   INV 09-DEC-2024
            variant X1, mRNA.
ACCESSION   XM_017141493
VERSION     XM_017141493.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017141493.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1663
                     /gene="aspr"
                     /note="asperous; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins"
                     /db_xref="GeneID:108057293"
     CDS             115..1443
                     /gene="aspr"
                     /codon_start=1
                     /product="adhesive plaque matrix protein 2 isoform X1"
                     /protein_id="XP_016996982.2"
                     /db_xref="GeneID:108057293"
                     /translation="MQQLLLVALVAVAIGSLPQLAVGKKIEKRCVNCTYRTYYTYGDG
                     RSLQRVVYRDPVYTRAQQSYSSGCSGNPCGVNAVCQEASGGRPVCSCPPGFSGNPLTH
                     CNRGECLDNVDCRGDLQCKDNRCVNPCVGACGIGSNCDARNHVAVCSCPAGYNGDPYH
                     ACHLNDPEEQCHPSPCGVNTKCEIINGVPTCSCNHGYVGNPLSGCRHECDHDGDCSGR
                     DMCSTNFKCVPACGQCGTGATCRTVSNHRAVCECPKGYIGSPYTECRPECYGDADCPA
                     GRPACFYGICKNTCEGACGIGADCNLRGLTPVCSCPRDMTGDPFVRCRPFTKEDLCDP
                     NPCGNNAICVPGHDNTGRERPVCNCLPGHTGNPLSHCSRGECLSNNECPDHRACINYQ
                     CIDPCIGKCATGASCEPKAHLAVCRCPQGQSGDALVSCRQTRTFPVAKYH"
     polyA_site      1663
                     /gene="aspr"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acattaccca gtgaaaaaac ggaaccattt acgaatttat atattttttt tgttttttat
       61 tttacgttgt ttatttgctg tagtgcgagt gagttctaag aacttaaccc aaaaatgcag
      121 cagctcctcc tcgtggcact ggtggcggtg gccattgggt ccttgcccca actagccgta
      181 ggtaaaaaga tcgagaagcg ttgtgtgaac tgcacatatc gtacatacta cacatacggc
      241 gatgggcgat ccctgcagcg ggttgtctat agagatccgg tctacacacg tgcccaacag
      301 tcgtacagca gcggatgcag cgggaatccg tgcggcgtga atgccgtgtg ccaggaggcc
      361 tccggaggac gtcctgtttg ctcctgcccg cccggattca gcggtaatcc gctcacccac
      421 tgcaatcgcg gcgagtgcct ggacaacgtc gactgccggg gcgacctgca gtgcaaggac
      481 aatcgctgcg ttaatccctg cgtgggtgcc tgtggcattg gctcgaattg tgacgcccgc
      541 aaccacgtgg ccgtgtgcag ctgcccagcg ggctacaatg gcgaccccta tcacgcctgc
      601 cacctcaacg atccggagga gcagtgccat ccgagtcctt gcggcgtgaa caccaagtgc
      661 gagatcatca acggcgtgcc cacctgttcg tgcaaccatg gctacgtggg caatccgctg
      721 agcgggtgtc gccatgagtg cgaccacgac ggcgactgca gcggccggga catgtgctcg
      781 accaacttca agtgcgttcc ggcctgcgga cagtgcggca ctggcgccac ctgccggacg
      841 gtcagcaacc accgggcggt gtgcgagtgc cccaagggat atatcggcag tccctacacg
      901 gagtgccggc cggagtgcta cggagacgcc gactgtcccg ccggacgacc cgcctgcttc
      961 tacggcatct gcaagaacac ctgcgaggga gcctgcggca tcggggccga ctgcaacctg
     1021 cgcggcctga cgcccgtctg cagctgtccg cgggacatga ccggcgaccc cttcgtccgc
     1081 tgccgaccct tcaccaagga ggatctctgc gaccccaatc cgtgcggcaa caacgccatc
     1141 tgcgtgcccg gccacgacaa caccgggcgg gagcgacccg tctgcaactg cctgccggga
     1201 cacaccggca atccgctgag ccactgcagc cggggtgagt gcctgagcaa caacgagtgt
     1261 cccgaccacc gcgcctgcat caactaccag tgcatcgatc cctgcatcgg caagtgcgcc
     1321 accggtgcca gttgcgagcc aaaggcccat ttggcggtct gtcgctgtcc acaaggacaa
     1381 tcgggcgacg ctttggtgtc ctgccgccag acgcgcacct tcccggtggc caagtaccac
     1441 tagggaggat tccggaggag gagtcccgat gcagccgcac tgcctgccag tcccttagtc
     1501 acctttcgtc cctgcctcaa cctgcacacc agtctatctg ttcgtcccct cgaattcgcc
     1561 ttcttcccat actagtcgtt gcattaacct cgtactctct ctctaatcga agcgaacaaa
     1621 aatgtgttga caacaatcaa taatacaagt aaacattaaa caa