Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017141479 3387 bp mRNA linear INV 09-DEC-2024 (Rab35), mRNA. ACCESSION XM_017141479 VERSION XM_017141479.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141479.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3387 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3387 /gene="Rab35" /note="RAS oncogene family member Rab35; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057282" CDS 836..1441 /gene="Rab35" /codon_start=1 /product="ras-related protein Rab-35" /protein_id="XP_016996968.1" /db_xref="GeneID:108057282" /translation="MARGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVD FKIRTVDIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGDSFANVRRW LEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELYETSAKDNINVENM FLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKGTKGGKCCR" misc_feature 842..1438 /gene="Rab35" /note="Rab GTPase family 35 (Rab35); Region: Rab35; cd04110" /db_xref="CDD:133310" misc_feature 860..865 /gene="Rab35" /note="Rab subfamily motif 1 (RabSF1); other site" /db_xref="CDD:133310" misc_feature 878..901 /gene="Rab35" /note="G1 box; other site" /db_xref="CDD:133310" misc_feature order(884..904,932..934,950..955,1031..1033,1193..1198, 1202..1204,1283..1291) /gene="Rab35" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133310" misc_feature 902..952 /gene="Rab35" /note="Rab subfamily motif 2 (RabSF2); other site" /db_xref="CDD:133310" misc_feature order(932..934,947..973) /gene="Rab35" /note="Switch I region; other site" /db_xref="CDD:133310" misc_feature order(947..949,959..982,1001..1003,1007..1009) /gene="Rab35" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133310" misc_feature 953..955 /gene="Rab35" /note="G2 box; other site" /db_xref="CDD:133310" misc_feature order(956..958,962..970,1013..1015,1019..1021,1040..1045, 1052..1054,1064..1066,1070..1081,1337..1339) /gene="Rab35" /note="putative effector interaction site [active]" /db_xref="CDD:133310" misc_feature order(956..961,965..967,1019..1024,1043..1045,1049..1051, 1055..1063) /gene="Rab35" /note="putative GDI interaction site [polypeptide binding]; other site" /db_xref="CDD:133310" misc_feature 956..970 /gene="Rab35" /note="Rab family motif 1 (RabF1); other site" /db_xref="CDD:133310" misc_feature 1007..1021 /gene="Rab35" /note="Rab family motif 2 (RabF2); other site" /db_xref="CDD:133310" misc_feature 1022..1033 /gene="Rab35" /note="G3 box; other site" /db_xref="CDD:133310" misc_feature order(1031..1033,1037..1069) /gene="Rab35" /note="Switch II region; other site" /db_xref="CDD:133310" misc_feature 1040..1057 /gene="Rab35" /note="Rab family motif 3 (RabF3); other site" /db_xref="CDD:133310" misc_feature 1064..1078 /gene="Rab35" /note="Rab family motif 4 (RabF4); other site" /db_xref="CDD:133310" misc_feature 1091..1108 /gene="Rab35" /note="Rab family motif 5 (RabF5); other site" /db_xref="CDD:133310" misc_feature 1160..1186 /gene="Rab35" /note="Rab subfamily motif 3 (RabSF3); other site" /db_xref="CDD:133310" misc_feature 1193..1204 /gene="Rab35" /note="G4 box; other site" /db_xref="CDD:133310" misc_feature 1283..1291 /gene="Rab35" /note="G5 box; other site" /db_xref="CDD:133310" misc_feature 1331..1339 /gene="Rab35" /note="Rab subfamily motif 4 (RabSF4); other site" /db_xref="CDD:133310" misc_feature 1430..1438 /gene="Rab35" /note="putative lipid modification site [posttranslational modification]; other site" /db_xref="CDD:133310" polyA_site 3387 /gene="Rab35" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacctctaat cgatgtttaa tagtttatgg aaacggaaca ttaagcataa ttaatcccga 61 acgccgacgc ccacaaatcc gcaccgcccg tccttccagc gctgcaacaa aataaattcc 121 gggagctgca agctggaaac tggagatttg caggccgcca aggaaatcga gataaattca 181 acagtcagcc aaagccctgc gtgtgtgtgt gtggtgtctg tgagcgcctg ccagtgtgtg 241 cgtacaagag cgagagagag agcaagattg cgagggagtc gagctttgca aatatttgcc 301 agccaatttc cgattttcgg catttaatcg cagtcttatc cgccagacag ccatttattc 361 cgattgaaag aatccacata ccatgctgct gcatttctct ccttaaaaaa aaccgctgat 421 aaacggcaag agccgaaaaa aaagttaatc aaaggaaatt aaataacaag gcggcggcaa 481 caacacttac ataaattaac tcgcaaagca acaacactaa taacaatagc ttatcaacaa 541 caacaacaac attagcagcc agcagccaca acaacaaagc agcagccaga aagaacaaca 601 gtttatctcc aatactcagc cggcagcacg agtgcgagcg agagggcgat agttggcgag 661 agcgagagaa gggtgtgcgt gtgtgtgtga gtgtgggagc aagcagcgca aaaaaaaagg 721 aaaacaacaa aagtatattt tgcattgttc gacgcgccta actgtaaata taaaagcact 781 tgcaaaaaca aggaaaaacg caacaaaaaa aaacgaaaaa ctaagagaaa caaaaatggc 841 acgcggcttc gatcatctgt tcaagttgct aataatcggc gatagcggcg tgggcaagtc 901 gtcgctgctc atccgtttct cggacgacac attctcgggc agttacatca cgaccatcgg 961 cgtggacttc aagatccgca ccgtggacat cgaggggatg cgcgtgaagc tgcagatctg 1021 ggatacggcc ggtcaggagc gcttccggac gatcaccagc acctactacc gcggcaccca 1081 tggcgtcatc gtggtctacg atgtcacgaa cggcgactcc ttcgcgaacg tccgccgctg 1141 gctggaggag atccagaaca actgcgacgt ggtcaaaaaa gtattagtgg gcaacaagaa 1201 cgatgatccg gacagaaagg tagtaatcac cgaggacgcg cagcggttcg cgaaacaaat 1261 ggacatcgag ctgtacgaga catccgccaa agacaacatc aacgtggaga acatgttctt 1321 gtcgatcacg cggcaggtgc tcgaccacaa gctgcgcacc tcccccaacg agcagcagaa 1381 ggacacgctc catttgaagc ccaatcccaa gggcaccaag ggtgggaagt gctgcaggtg 1441 aaagcggctc cggcacggga gctggcattg cctggactgg acagacggcg gcggtgggac 1501 ggggattgga accggaattt ggaccaggac ctggatcaac tccgggggcg gatggaatcg 1561 ttgtgggggc gcgtagtttg tagggttctc ggcgtatgat acggcacaca ctcactcaca 1621 tagacatagc ttacaccaac caacaaacaa acaagaaaca accaacaaca caagaacact 1681 cacaatccac acccacaccc acacccaaaa cccactagag acaacaacgt tttttttgtt 1741 ttgttttttt cctcctgtgt ttttattcgg aataatgcca gatagccgta aattaaagtg 1801 taaaagtgta aagcgcaatt aaatgtattt agcaatttat atacatatta atatatacat 1861 aaacaaaatt taaacaaatc gcatatttat atacaagaat atatttatat ttcaaacgga 1921 aaattgtatt tacaattgca aaagcgacag caaacaaatg tattaggtcg actatttatc 1981 gaaagctaaa tgtacgaaac atttctatat atgtagggga gatgaaacag caaactattg 2041 gcttccgatc gcgattcttc acttcatact cctatagttt taatattaaa tactgaaagt 2101 cttcgaaaca cgacgaaaat tccacagcca acaacttatt ttgacttttt tatttttctc 2161 ttatttaaat tcattttcgt tgggtgaact ttatgttaga actttattta aatgcaactg 2221 aaaactgttt tgaatctcaa tttattttgg ttactgcctc ggaaactgcc ttactttttt 2281 aagaacttgt ttgatattat aactgccatt cctttattga aattactggg taaactgaaa 2341 aaccttttac aaattttact gtttcttatt tatatattat gggtgtcatt aaatatcact 2401 accaatgagc ctgatttttt tttcaaaacc tcattttagg caggatttgt atttaattat 2461 agtaaacatt actaaatatc agaaagaata aaaatgtatc tttccaaaaa catgatttgt 2521 tgtgatcgga ctgtaatttg aatacagtat aaccagcttt ttataataat taatttaaga 2581 gtgaaaaagg tatattgtat atatgtacac cacttcctct cttctcgttt aaactaaagg 2641 atctgcaatg agtttctgac aactggattg aaagaagcta agatcataac gtcctataaa 2701 gaataaaatg tgtaaattaa atcacaaata atcaggaaga attcagtaaa tcaaatactt 2761 cagtatacca atagttaagt gtctcgattc gtaaatgcgc ggcactcagc tctaaaaaca 2821 aacgcatact ttcaggcgat tataaaaaaa aatcccaaga tgtgaaataa atgatgtgca 2881 tttgaaaaac aatttttttt acacatatta gtggacattt caataatcta catgtcaaat 2941 aacatttgta tagatataca catccgaaaa actcgatttt cattagagga acaggcttca 3001 tattttcaga tattcaaaaa gattcccgct ttctactaat tttatttatt tattttaaca 3061 ttttttctta tttattattg gcattccaat aagaacagat ttctcaaaat ccaacttaaa 3121 actatttagg atatccatgt gtgtttattc agacatttta tgctatatcc gaatatcaga 3181 tgaatatgta ttgagttagg taccaaaaaa aatgacctag ttattggttt tgctgcaaga 3241 cgctttcaga aagggcggca aactcataat aaaagactat ccatgattaa aaagaacgta 3301 tatttcatac caaccaaaag aatactatat ttatatatac atgtatattt ttatcgatta 3361 aaataaaaga taatatgatt ttcaaca