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LOCUS XM_017141464 2903 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X12, mRNA. ACCESSION XM_017141464 VERSION XM_017141464.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141464.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2903 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2903 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057270" CDS 251..2155 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X12" /protein_id="XP_016996953.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYVLAFDAQGDD EESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQK QMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVF YDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVF HCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAAHTHPVYCL QMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEIN SLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSID WTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVP TASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLS EIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1109..2059 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1112..1249 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1151..1153,1193..1195,1211..1216,1244..1249, 1313..1315,1325..1327,1343..1348,1400..1405,1460..1462, 1475..1477,1493..1498,1538..1540,1634..1636,1649..1651, 1685..1690,1760..1762,1772..1774,1790..1795,1829..1834, 1886..1888,1901..1903,1919..1924,1967..1972,2024..2026, 2036..2038,2054..2059) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1280..1396 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1418..1537 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1565..1708 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1730..1828 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1844..1960 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1982..2062 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2903 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ctcatgctac ggattattat gtgcttgcat ttgatgccca 721 aggagacgac gaagagagct cgctgcagaa cctggacaat ggattcacct ccaagctgcc 781 accgggctat ctcacccacg gcctgcccac cgtcaaggac gtcgccccgg ccatcacgcc 841 cctcgagatc aagaaggaga ccgaggtgaa gaaggaggtg aacgagctat ccgaggagca 901 gaagcagatg atcatcctgt cggaggactt caagcggttc gtggtgcgcg ccggccgcgt 961 catcgagcgg gcgctctcgg agaacgtgga catttacacg gactacatcg gcggcggcga 1021 cagcgaggag gcgaacgacg agcgttcgca tgcccgcctg tcgctcaatc gcgtcttcta 1081 cgacgaacgc tggtcgaaga accgctgcat caccagcatg gactggtcca cacacttccc 1141 ggagctggtg gtggcctcgt atcacaacaa cgaggagagt cccaacgagc cggacggcgt 1201 ggtgatggtt tggaacacca aattcaagaa gagcacgccc gaggatgtct tccactgtca 1261 gagcgcggtg atgtccacgt gctttgccaa attcaatccc aatctgattc tcggcggcac 1321 ctattcgggc caaattgtgc tgtgggacaa tcgcgtggcc aagcgcacgc ccatccagcg 1381 aactcctttg agtgccgcgg cgcacacgca tcccgtttat tgcctgcaaa tggttggcac 1441 ccaaaatgcg cacaacgtca tctccatatc gtcggacggc aagctgtgct cctggtcgct 1501 ggacatgctg tcgcagccgc aggataccct ggagttgcag cagcgccaat cgaaggccat 1561 tgccatcaca tcgatggcct ttccggccaa cgagatcaac agtctggtga tgggcagcga 1621 ggatggctat gtttactccg cctcgcgtca cggcctgcgt tctggagtca atgaggtgta 1681 cgaacggcat ttgggcccca tcacgggtat atccacgcac tacaaccagc tgtcgccgga 1741 ctttggccac ctcttcctca cctcctcgat tgactggacc attaagctgt ggtcgctcaa 1801 ggacacaaag ccgctgtatt cgttcgagga caattcggac tatgtgatgg acgtcgcctg 1861 gtcgccggtg catcccgcgc tctttgccgc cgtcgacgga agcggacgcc tggacctgtg 1921 gaacctcaac caggacacgg aggtgcccac agcctcgatc gttgtggccg gcgctccggc 1981 cctgaatcgc gtctcctgga cgccgtctgg cctgcatgtc tgcatcggcg acgaggccgg 2041 caagctgtac gtttacgatg tggccgagaa tctggcgcag ccgtcgcgcg acgaatggtc 2101 gcggtttaat acccatctta gcgagatcaa gctcaaccag agcgacgagg tctaggacaa 2161 tagttgttaa ctggtagtta atagtcgata cggaatcctg gaaggagcgt ccttgaatga 2221 aatttaattt tgtatttttt gtatcttttg tgatcccact gctccttagt tgtgtatagc 2281 ccataactcg aaactcatcc gcagtccaaa tgctcagaaa cttcaccctt tcccccccaa 2341 aaaaacaaag aaatcaaggg aaactgcaac attctctagg caaccacaca gtaactgtat 2401 tagaaggttt atttaatgaa actcgacaga atatagagat atatatatac atgagcagtg 2461 gaagaagaac tagaagttgc tctccccgca tgtttgattg gcatattcat taatttgtta 2521 ttagatattt tcccccaggt ccattcccat tttcaatcga taatggcaat ggatctgccg 2581 aatgggattt attattttgt aattttattt tgtggaacta aaaagattga agcatgatca 2641 tttaaccgac tgtcgggcag gctgagagca acacataaat aaattaaaaa tgctacatat 2701 tatatacaac aacgtattaa gcttaaacct gagaagaaga aagacagaga ctaagaaggt 2761 cggacaggaa aaaaaaacgg gggctcagga atgagagcac gaaaggcact gaagatcgac 2821 cgaaagagcc caaaatgtaa atgtattaga gcgaagccta tttaacgaga ttaaataaac 2881 ataatatcta tatacacata caa