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LOCUS XM_017141463 2906 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X11, mRNA. ACCESSION XM_017141463 VERSION XM_017141463.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141463.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2906 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2906 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2158 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X11" /protein_id="XP_016996952.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDDEYNLNPGLEWEDEFTD DEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQ KQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRV FYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDV FHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAAHTHPVYC LQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEI NSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSI DWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEV PTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHL SEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1112..2062 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1115..1252 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1154..1156,1196..1198,1214..1219,1247..1252, 1316..1318,1328..1330,1346..1351,1403..1408,1463..1465, 1478..1480,1496..1501,1541..1543,1637..1639,1652..1654, 1688..1693,1763..1765,1775..1777,1793..1798,1832..1837, 1889..1891,1904..1906,1922..1927,1970..1975,2027..2029, 2039..2041,2057..2062) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1283..1399 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1421..1540 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1568..1711 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1733..1831 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1847..1963 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1985..2065 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2906 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg atgaatacaa tcttaatccg ggtttagagt gggaggatga 721 attcacagac gacgaagaga gctcgctgca gaacctggac aatggattca cctccaagct 781 gccaccgggc tatctcaccc acggcctgcc caccgtcaag gacgtcgccc cggccatcac 841 gcccctcgag atcaagaagg agaccgaggt gaagaaggag gtgaacgagc tatccgagga 901 gcagaagcag atgatcatcc tgtcggagga cttcaagcgg ttcgtggtgc gcgccggccg 961 cgtcatcgag cgggcgctct cggagaacgt ggacatttac acggactaca tcggcggcgg 1021 cgacagcgag gaggcgaacg acgagcgttc gcatgcccgc ctgtcgctca atcgcgtctt 1081 ctacgacgaa cgctggtcga agaaccgctg catcaccagc atggactggt ccacacactt 1141 cccggagctg gtggtggcct cgtatcacaa caacgaggag agtcccaacg agccggacgg 1201 cgtggtgatg gtttggaaca ccaaattcaa gaagagcacg cccgaggatg tcttccactg 1261 tcagagcgcg gtgatgtcca cgtgctttgc caaattcaat cccaatctga ttctcggcgg 1321 cacctattcg ggccaaattg tgctgtggga caatcgcgtg gccaagcgca cgcccatcca 1381 gcgaactcct ttgagtgccg cggcgcacac gcatcccgtt tattgcctgc aaatggttgg 1441 cacccaaaat gcgcacaacg tcatctccat atcgtcggac ggcaagctgt gctcctggtc 1501 gctggacatg ctgtcgcagc cgcaggatac cctggagttg cagcagcgcc aatcgaaggc 1561 cattgccatc acatcgatgg cctttccggc caacgagatc aacagtctgg tgatgggcag 1621 cgaggatggc tatgtttact ccgcctcgcg tcacggcctg cgttctggag tcaatgaggt 1681 gtacgaacgg catttgggcc ccatcacggg tatatccacg cactacaacc agctgtcgcc 1741 ggactttggc cacctcttcc tcacctcctc gattgactgg accattaagc tgtggtcgct 1801 caaggacaca aagccgctgt attcgttcga ggacaattcg gactatgtga tggacgtcgc 1861 ctggtcgccg gtgcatcccg cgctctttgc cgccgtcgac ggaagcggac gcctggacct 1921 gtggaacctc aaccaggaca cggaggtgcc cacagcctcg atcgttgtgg ccggcgctcc 1981 ggccctgaat cgcgtctcct ggacgccgtc tggcctgcat gtctgcatcg gcgacgaggc 2041 cggcaagctg tacgtttacg atgtggccga gaatctggcg cagccgtcgc gcgacgaatg 2101 gtcgcggttt aatacccatc ttagcgagat caagctcaac cagagcgacg aggtctagga 2161 caatagttgt taactggtag ttaatagtcg atacggaatc ctggaaggag cgtccttgaa 2221 tgaaatttaa ttttgtattt tttgtatctt ttgtgatccc actgctcctt agttgtgtat 2281 agcccataac tcgaaactca tccgcagtcc aaatgctcag aaacttcacc ctttcccccc 2341 caaaaaaaca aagaaatcaa gggaaactgc aacattctct aggcaaccac acagtaactg 2401 tattagaagg tttatttaat gaaactcgac agaatataga gatatatata tacatgagca 2461 gtggaagaag aactagaagt tgctctcccc gcatgtttga ttggcatatt cattaatttg 2521 ttattagata ttttccccca ggtccattcc cattttcaat cgataatggc aatggatctg 2581 ccgaatggga tttattattt tgtaatttta ttttgtggaa ctaaaaagat tgaagcatga 2641 tcatttaacc gactgtcggg caggctgaga gcaacacata aataaattaa aaatgctaca 2701 tattatatac aacaacgtat taagcttaaa cctgagaaga agaaagacag agactaagaa 2761 ggtcggacag gaaaaaaaaa cgggggctca ggaatgagag cacgaaaggc actgaagatc 2821 gaccgaaaga gcccaaaatg taaatgtatt agagcgaagc ctatttaacg agattaaata 2881 aacataatat ctatatacac atacaa