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LOCUS XM_017141462 2909 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X10, mRNA. ACCESSION XM_017141462 VERSION XM_017141462.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141462.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2909 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2909 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2161 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X10" /protein_id="XP_016996951.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDDEYNLNPGLEWEDEFTG DDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEE QKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNR VFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPED VFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAAHTHPVY CLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANE INSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSS IDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTE VPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTH LSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1115..2065 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1118..1255 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1157..1159,1199..1201,1217..1222,1250..1255, 1319..1321,1331..1333,1349..1354,1406..1411,1466..1468, 1481..1483,1499..1504,1544..1546,1640..1642,1655..1657, 1691..1696,1766..1768,1778..1780,1796..1801,1835..1840, 1892..1894,1907..1909,1925..1930,1973..1978,2030..2032, 2042..2044,2060..2065) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1286..1402 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1424..1543 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1571..1714 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1736..1834 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1850..1966 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1988..2068 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2909 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg atgaatacaa tcttaatccg ggtttagagt gggaggatga 721 attcacagga gacgacgaag agagctcgct gcagaacctg gacaatggat tcacctccaa 781 gctgccaccg ggctatctca cccacggcct gcccaccgtc aaggacgtcg ccccggccat 841 cacgcccctc gagatcaaga aggagaccga ggtgaagaag gaggtgaacg agctatccga 901 ggagcagaag cagatgatca tcctgtcgga ggacttcaag cggttcgtgg tgcgcgccgg 961 ccgcgtcatc gagcgggcgc tctcggagaa cgtggacatt tacacggact acatcggcgg 1021 cggcgacagc gaggaggcga acgacgagcg ttcgcatgcc cgcctgtcgc tcaatcgcgt 1081 cttctacgac gaacgctggt cgaagaaccg ctgcatcacc agcatggact ggtccacaca 1141 cttcccggag ctggtggtgg cctcgtatca caacaacgag gagagtccca acgagccgga 1201 cggcgtggtg atggtttgga acaccaaatt caagaagagc acgcccgagg atgtcttcca 1261 ctgtcagagc gcggtgatgt ccacgtgctt tgccaaattc aatcccaatc tgattctcgg 1321 cggcacctat tcgggccaaa ttgtgctgtg ggacaatcgc gtggccaagc gcacgcccat 1381 ccagcgaact cctttgagtg ccgcggcgca cacgcatccc gtttattgcc tgcaaatggt 1441 tggcacccaa aatgcgcaca acgtcatctc catatcgtcg gacggcaagc tgtgctcctg 1501 gtcgctggac atgctgtcgc agccgcagga taccctggag ttgcagcagc gccaatcgaa 1561 ggccattgcc atcacatcga tggcctttcc ggccaacgag atcaacagtc tggtgatggg 1621 cagcgaggat ggctatgttt actccgcctc gcgtcacggc ctgcgttctg gagtcaatga 1681 ggtgtacgaa cggcatttgg gccccatcac gggtatatcc acgcactaca accagctgtc 1741 gccggacttt ggccacctct tcctcacctc ctcgattgac tggaccatta agctgtggtc 1801 gctcaaggac acaaagccgc tgtattcgtt cgaggacaat tcggactatg tgatggacgt 1861 cgcctggtcg ccggtgcatc ccgcgctctt tgccgccgtc gacggaagcg gacgcctgga 1921 cctgtggaac ctcaaccagg acacggaggt gcccacagcc tcgatcgttg tggccggcgc 1981 tccggccctg aatcgcgtct cctggacgcc gtctggcctg catgtctgca tcggcgacga 2041 ggccggcaag ctgtacgttt acgatgtggc cgagaatctg gcgcagccgt cgcgcgacga 2101 atggtcgcgg tttaataccc atcttagcga gatcaagctc aaccagagcg acgaggtcta 2161 ggacaatagt tgttaactgg tagttaatag tcgatacgga atcctggaag gagcgtcctt 2221 gaatgaaatt taattttgta ttttttgtat cttttgtgat cccactgctc cttagttgtg 2281 tatagcccat aactcgaaac tcatccgcag tccaaatgct cagaaacttc accctttccc 2341 ccccaaaaaa acaaagaaat caagggaaac tgcaacattc tctaggcaac cacacagtaa 2401 ctgtattaga aggtttattt aatgaaactc gacagaatat agagatatat atatacatga 2461 gcagtggaag aagaactaga agttgctctc cccgcatgtt tgattggcat attcattaat 2521 ttgttattag atattttccc ccaggtccat tcccattttc aatcgataat ggcaatggat 2581 ctgccgaatg ggatttatta ttttgtaatt ttattttgtg gaactaaaaa gattgaagca 2641 tgatcattta accgactgtc gggcaggctg agagcaacac ataaataaat taaaaatgct 2701 acatattata tacaacaacg tattaagctt aaacctgaga agaagaaaga cagagactaa 2761 gaaggtcgga caggaaaaaa aaacgggggc tcaggaatga gagcacgaaa ggcactgaag 2821 atcgaccgaa agagcccaaa atgtaaatgt attagagcga agcctattta acgagattaa 2881 ataaacataa tatctatata cacatacaa