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LOCUS XM_017141460 2927 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X9, mRNA. ACCESSION XM_017141460 VERSION XM_017141460.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141460.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2927 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2927 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2179 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X9" /protein_id="XP_016996949.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDEYNLNPGLE WEDEFTDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEV NELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHA RLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFK KSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAA HTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSM AFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWN LNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEW SRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1133..2083 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1136..1273 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1175..1177,1217..1219,1235..1240,1268..1273, 1337..1339,1349..1351,1367..1372,1424..1429,1484..1486, 1499..1501,1517..1522,1562..1564,1658..1660,1673..1675, 1709..1714,1784..1786,1796..1798,1814..1819,1853..1858, 1910..1912,1925..1927,1943..1948,1991..1996,2048..2050, 2060..2062,2078..2083) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1304..1420 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1442..1561 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1589..1732 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1754..1852 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1868..1984 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2006..2086 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2927 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ctcatgctac ggattattat gatgaataca atcttaatcc 721 gggtttagag tgggaggatg aattcacaga cgacgaagag agctcgctgc agaacctgga 781 caatggattc acctccaagc tgccaccggg ctatctcacc cacggcctgc ccaccgtcaa 841 ggacgtcgcc ccggccatca cgcccctcga gatcaagaag gagaccgagg tgaagaagga 901 ggtgaacgag ctatccgagg agcagaagca gatgatcatc ctgtcggagg acttcaagcg 961 gttcgtggtg cgcgccggcc gcgtcatcga gcgggcgctc tcggagaacg tggacattta 1021 cacggactac atcggcggcg gcgacagcga ggaggcgaac gacgagcgtt cgcatgcccg 1081 cctgtcgctc aatcgcgtct tctacgacga acgctggtcg aagaaccgct gcatcaccag 1141 catggactgg tccacacact tcccggagct ggtggtggcc tcgtatcaca acaacgagga 1201 gagtcccaac gagccggacg gcgtggtgat ggtttggaac accaaattca agaagagcac 1261 gcccgaggat gtcttccact gtcagagcgc ggtgatgtcc acgtgctttg ccaaattcaa 1321 tcccaatctg attctcggcg gcacctattc gggccaaatt gtgctgtggg acaatcgcgt 1381 ggccaagcgc acgcccatcc agcgaactcc tttgagtgcc gcggcgcaca cgcatcccgt 1441 ttattgcctg caaatggttg gcacccaaaa tgcgcacaac gtcatctcca tatcgtcgga 1501 cggcaagctg tgctcctggt cgctggacat gctgtcgcag ccgcaggata ccctggagtt 1561 gcagcagcgc caatcgaagg ccattgccat cacatcgatg gcctttccgg ccaacgagat 1621 caacagtctg gtgatgggca gcgaggatgg ctatgtttac tccgcctcgc gtcacggcct 1681 gcgttctgga gtcaatgagg tgtacgaacg gcatttgggc cccatcacgg gtatatccac 1741 gcactacaac cagctgtcgc cggactttgg ccacctcttc ctcacctcct cgattgactg 1801 gaccattaag ctgtggtcgc tcaaggacac aaagccgctg tattcgttcg aggacaattc 1861 ggactatgtg atggacgtcg cctggtcgcc ggtgcatccc gcgctctttg ccgccgtcga 1921 cggaagcgga cgcctggacc tgtggaacct caaccaggac acggaggtgc ccacagcctc 1981 gatcgttgtg gccggcgctc cggccctgaa tcgcgtctcc tggacgccgt ctggcctgca 2041 tgtctgcatc ggcgacgagg ccggcaagct gtacgtttac gatgtggccg agaatctggc 2101 gcagccgtcg cgcgacgaat ggtcgcggtt taatacccat cttagcgaga tcaagctcaa 2161 ccagagcgac gaggtctagg acaatagttg ttaactggta gttaatagtc gatacggaat 2221 cctggaagga gcgtccttga atgaaattta attttgtatt ttttgtatct tttgtgatcc 2281 cactgctcct tagttgtgta tagcccataa ctcgaaactc atccgcagtc caaatgctca 2341 gaaacttcac cctttccccc ccaaaaaaac aaagaaatca agggaaactg caacattctc 2401 taggcaacca cacagtaact gtattagaag gtttatttaa tgaaactcga cagaatatag 2461 agatatatat atacatgagc agtggaagaa gaactagaag ttgctctccc cgcatgtttg 2521 attggcatat tcattaattt gttattagat attttccccc aggtccattc ccattttcaa 2581 tcgataatgg caatggatct gccgaatggg atttattatt ttgtaatttt attttgtgga 2641 actaaaaaga ttgaagcatg atcatttaac cgactgtcgg gcaggctgag agcaacacat 2701 aaataaatta aaaatgctac atattatata caacaacgta ttaagcttaa acctgagaag 2761 aagaaagaca gagactaaga aggtcggaca ggaaaaaaaa acgggggctc aggaatgaga 2821 gcacgaaagg cactgaagat cgaccgaaag agcccaaaat gtaaatgtat tagagcgaag 2881 cctatttaac gagattaaat aaacataata tctatataca catacaa