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LOCUS XM_017141458 2930 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X8, mRNA. ACCESSION XM_017141458 VERSION XM_017141458.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141458.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2930 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2930 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057270" CDS 251..2182 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X8" /protein_id="XP_016996947.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDEYNLNPGLE WEDEFTGDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE VNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSH ARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKF KKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAA AHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITS MAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFG HLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLW NLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE WSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1136..2086 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1139..1276 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1178..1180,1220..1222,1238..1243,1271..1276, 1340..1342,1352..1354,1370..1375,1427..1432,1487..1489, 1502..1504,1520..1525,1565..1567,1661..1663,1676..1678, 1712..1717,1787..1789,1799..1801,1817..1822,1856..1861, 1913..1915,1928..1930,1946..1951,1994..1999,2051..2053, 2063..2065,2081..2086) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1307..1423 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1445..1564 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1592..1735 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1757..1855 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1871..1987 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2009..2089 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2930 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ctcatgctac ggattattat gatgaataca atcttaatcc 721 gggtttagag tgggaggatg aattcacagg agacgacgaa gagagctcgc tgcagaacct 781 ggacaatgga ttcacctcca agctgccacc gggctatctc acccacggcc tgcccaccgt 841 caaggacgtc gccccggcca tcacgcccct cgagatcaag aaggagaccg aggtgaagaa 901 ggaggtgaac gagctatccg aggagcagaa gcagatgatc atcctgtcgg aggacttcaa 961 gcggttcgtg gtgcgcgccg gccgcgtcat cgagcgggcg ctctcggaga acgtggacat 1021 ttacacggac tacatcggcg gcggcgacag cgaggaggcg aacgacgagc gttcgcatgc 1081 ccgcctgtcg ctcaatcgcg tcttctacga cgaacgctgg tcgaagaacc gctgcatcac 1141 cagcatggac tggtccacac acttcccgga gctggtggtg gcctcgtatc acaacaacga 1201 ggagagtccc aacgagccgg acggcgtggt gatggtttgg aacaccaaat tcaagaagag 1261 cacgcccgag gatgtcttcc actgtcagag cgcggtgatg tccacgtgct ttgccaaatt 1321 caatcccaat ctgattctcg gcggcaccta ttcgggccaa attgtgctgt gggacaatcg 1381 cgtggccaag cgcacgccca tccagcgaac tcctttgagt gccgcggcgc acacgcatcc 1441 cgtttattgc ctgcaaatgg ttggcaccca aaatgcgcac aacgtcatct ccatatcgtc 1501 ggacggcaag ctgtgctcct ggtcgctgga catgctgtcg cagccgcagg ataccctgga 1561 gttgcagcag cgccaatcga aggccattgc catcacatcg atggcctttc cggccaacga 1621 gatcaacagt ctggtgatgg gcagcgagga tggctatgtt tactccgcct cgcgtcacgg 1681 cctgcgttct ggagtcaatg aggtgtacga acggcatttg ggccccatca cgggtatatc 1741 cacgcactac aaccagctgt cgccggactt tggccacctc ttcctcacct cctcgattga 1801 ctggaccatt aagctgtggt cgctcaagga cacaaagccg ctgtattcgt tcgaggacaa 1861 ttcggactat gtgatggacg tcgcctggtc gccggtgcat cccgcgctct ttgccgccgt 1921 cgacggaagc ggacgcctgg acctgtggaa cctcaaccag gacacggagg tgcccacagc 1981 ctcgatcgtt gtggccggcg ctccggccct gaatcgcgtc tcctggacgc cgtctggcct 2041 gcatgtctgc atcggcgacg aggccggcaa gctgtacgtt tacgatgtgg ccgagaatct 2101 ggcgcagccg tcgcgcgacg aatggtcgcg gtttaatacc catcttagcg agatcaagct 2161 caaccagagc gacgaggtct aggacaatag ttgttaactg gtagttaata gtcgatacgg 2221 aatcctggaa ggagcgtcct tgaatgaaat ttaattttgt attttttgta tcttttgtga 2281 tcccactgct ccttagttgt gtatagccca taactcgaaa ctcatccgca gtccaaatgc 2341 tcagaaactt caccctttcc cccccaaaaa aacaaagaaa tcaagggaaa ctgcaacatt 2401 ctctaggcaa ccacacagta actgtattag aaggtttatt taatgaaact cgacagaata 2461 tagagatata tatatacatg agcagtggaa gaagaactag aagttgctct ccccgcatgt 2521 ttgattggca tattcattaa tttgttatta gatattttcc cccaggtcca ttcccatttt 2581 caatcgataa tggcaatgga tctgccgaat gggatttatt attttgtaat tttattttgt 2641 ggaactaaaa agattgaagc atgatcattt aaccgactgt cgggcaggct gagagcaaca 2701 cataaataaa ttaaaaatgc tacatattat atacaacaac gtattaagct taaacctgag 2761 aagaagaaag acagagacta agaaggtcgg acaggaaaaa aaaacggggg ctcaggaatg 2821 agagcacgaa aggcactgaa gatcgaccga aagagcccaa aatgtaaatg tattagagcg 2881 aagcctattt aacgagatta aataaacata atatctatat acacatacaa