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LOCUS XM_017141455 2960 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X5, mRNA. ACCESSION XM_017141455 VERSION XM_017141455.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141455.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2960 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2960 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2212 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X5" /protein_id="XP_016996944.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDGYMEDWWRPRKAHATDY YDEYNLNPGLEWEDEFTDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLE IKKETEVKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGD SEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPD GVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRT PIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQ RQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGIST HYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAA VDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVA ENLAQPSRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1166..2116 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1169..1306 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1208..1210,1250..1252,1268..1273,1301..1306, 1370..1372,1382..1384,1400..1405,1457..1462,1517..1519, 1532..1534,1550..1555,1595..1597,1691..1693,1706..1708, 1742..1747,1817..1819,1829..1831,1847..1852,1886..1891, 1943..1945,1958..1960,1976..1981,2024..2029,2081..2083, 2093..2095,2111..2116) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1337..1453 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1475..1594 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1622..1765 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1787..1885 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1901..2017 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2039..2119 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2960 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg gatatatgga ggactggtgg cgtccacgta aagctcatgc 721 tacggattat tatgatgaat acaatcttaa tccgggttta gagtgggagg atgaattcac 781 agacgacgaa gagagctcgc tgcagaacct ggacaatgga ttcacctcca agctgccacc 841 gggctatctc acccacggcc tgcccaccgt caaggacgtc gccccggcca tcacgcccct 901 cgagatcaag aaggagaccg aggtgaagaa ggaggtgaac gagctatccg aggagcagaa 961 gcagatgatc atcctgtcgg aggacttcaa gcggttcgtg gtgcgcgccg gccgcgtcat 1021 cgagcgggcg ctctcggaga acgtggacat ttacacggac tacatcggcg gcggcgacag 1081 cgaggaggcg aacgacgagc gttcgcatgc ccgcctgtcg ctcaatcgcg tcttctacga 1141 cgaacgctgg tcgaagaacc gctgcatcac cagcatggac tggtccacac acttcccgga 1201 gctggtggtg gcctcgtatc acaacaacga ggagagtccc aacgagccgg acggcgtggt 1261 gatggtttgg aacaccaaat tcaagaagag cacgcccgag gatgtcttcc actgtcagag 1321 cgcggtgatg tccacgtgct ttgccaaatt caatcccaat ctgattctcg gcggcaccta 1381 ttcgggccaa attgtgctgt gggacaatcg cgtggccaag cgcacgccca tccagcgaac 1441 tcctttgagt gccgcggcgc acacgcatcc cgtttattgc ctgcaaatgg ttggcaccca 1501 aaatgcgcac aacgtcatct ccatatcgtc ggacggcaag ctgtgctcct ggtcgctgga 1561 catgctgtcg cagccgcagg ataccctgga gttgcagcag cgccaatcga aggccattgc 1621 catcacatcg atggcctttc cggccaacga gatcaacagt ctggtgatgg gcagcgagga 1681 tggctatgtt tactccgcct cgcgtcacgg cctgcgttct ggagtcaatg aggtgtacga 1741 acggcatttg ggccccatca cgggtatatc cacgcactac aaccagctgt cgccggactt 1801 tggccacctc ttcctcacct cctcgattga ctggaccatt aagctgtggt cgctcaagga 1861 cacaaagccg ctgtattcgt tcgaggacaa ttcggactat gtgatggacg tcgcctggtc 1921 gccggtgcat cccgcgctct ttgccgccgt cgacggaagc ggacgcctgg acctgtggaa 1981 cctcaaccag gacacggagg tgcccacagc ctcgatcgtt gtggccggcg ctccggccct 2041 gaatcgcgtc tcctggacgc cgtctggcct gcatgtctgc atcggcgacg aggccggcaa 2101 gctgtacgtt tacgatgtgg ccgagaatct ggcgcagccg tcgcgcgacg aatggtcgcg 2161 gtttaatacc catcttagcg agatcaagct caaccagagc gacgaggtct aggacaatag 2221 ttgttaactg gtagttaata gtcgatacgg aatcctggaa ggagcgtcct tgaatgaaat 2281 ttaattttgt attttttgta tcttttgtga tcccactgct ccttagttgt gtatagccca 2341 taactcgaaa ctcatccgca gtccaaatgc tcagaaactt caccctttcc cccccaaaaa 2401 aacaaagaaa tcaagggaaa ctgcaacatt ctctaggcaa ccacacagta actgtattag 2461 aaggtttatt taatgaaact cgacagaata tagagatata tatatacatg agcagtggaa 2521 gaagaactag aagttgctct ccccgcatgt ttgattggca tattcattaa tttgttatta 2581 gatattttcc cccaggtcca ttcccatttt caatcgataa tggcaatgga tctgccgaat 2641 gggatttatt attttgtaat tttattttgt ggaactaaaa agattgaagc atgatcattt 2701 aaccgactgt cgggcaggct gagagcaaca cataaataaa ttaaaaatgc tacatattat 2761 atacaacaac gtattaagct taaacctgag aagaagaaag acagagacta agaaggtcgg 2821 acaggaaaaa aaaacggggg ctcaggaatg agagcacgaa aggcactgaa gatcgaccga 2881 aagagcccaa aatgtaaatg tattagagcg aagcctattt aacgagatta aataaacata 2941 atatctatat acacatacaa