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LOCUS XM_017141451 2990 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X2, mRNA. ACCESSION XM_017141451 VERSION XM_017141451.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017141451.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2990 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2990 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2242 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X2" /protein_id="XP_016996940.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWW RPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLDNGFTSKLPPGYLTHGLPTVK DVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVD IYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYH NNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIV LWDNRVAKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLS QPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYER HLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAW SPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDE AGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1196..2146 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1199..1336 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1238..1240,1280..1282,1298..1303,1331..1336, 1400..1402,1412..1414,1430..1435,1487..1492,1547..1549, 1562..1564,1580..1585,1670..1672,1721..1723,1736..1738, 1772..1777,1847..1849,1859..1861,1877..1882,1916..1921, 1973..1975,1988..1990,2006..2011,2054..2059,2111..2113, 2123..2125,2141..2146) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1367..1483 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1505..1624 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1652..1795 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1817..1915 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1931..2047 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2069..2149 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2990 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ttctttcttg ccactcctcg cccctgtcag gatatatgga 721 ggactggtgg cgtccacgta aagctcatgc tacggattat tatgatgaat acaatcttaa 781 tccgggttta gagtgggagg atgaattcac agacgacgaa gagagctcgc tgcagaacct 841 ggacaatgga ttcacctcca agctgccacc gggctatctc acccacggcc tgcccaccgt 901 caaggacgtc gccccggcca tcacgcccct cgagatcaag aaggagaccg aggtgaagaa 961 ggaggtgaac gagctatccg aggagcagaa gcagatgatc atcctgtcgg aggacttcaa 1021 gcggttcgtg gtgcgcgccg gccgcgtcat cgagcgggcg ctctcggaga acgtggacat 1081 ttacacggac tacatcggcg gcggcgacag cgaggaggcg aacgacgagc gttcgcatgc 1141 ccgcctgtcg ctcaatcgcg tcttctacga cgaacgctgg tcgaagaacc gctgcatcac 1201 cagcatggac tggtccacac acttcccgga gctggtggtg gcctcgtatc acaacaacga 1261 ggagagtccc aacgagccgg acggcgtggt gatggtttgg aacaccaaat tcaagaagag 1321 cacgcccgag gatgtcttcc actgtcagag cgcggtgatg tccacgtgct ttgccaaatt 1381 caatcccaat ctgattctcg gcggcaccta ttcgggccaa attgtgctgt gggacaatcg 1441 cgtggccaag cgcacgccca tccagcgaac tcctttgagt gccgcggcgc acacgcatcc 1501 cgtttattgc ctgcaaatgg ttggcaccca aaatgcgcac aacgtcatct ccatatcgtc 1561 ggacggcaag ctgtgctcct ggtcgctgga catgctgtcg cagccgcagg ataccctgga 1621 gttgcagcag cgccaatcga aggccattgc catcacatcg atggcctttc cggccaacga 1681 gatcaacagt ctggtgatgg gcagcgagga tggctatgtt tactccgcct cgcgtcacgg 1741 cctgcgttct ggagtcaatg aggtgtacga acggcatttg ggccccatca cgggtatatc 1801 cacgcactac aaccagctgt cgccggactt tggccacctc ttcctcacct cctcgattga 1861 ctggaccatt aagctgtggt cgctcaagga cacaaagccg ctgtattcgt tcgaggacaa 1921 ttcggactat gtgatggacg tcgcctggtc gccggtgcat cccgcgctct ttgccgccgt 1981 cgacggaagc ggacgcctgg acctgtggaa cctcaaccag gacacggagg tgcccacagc 2041 ctcgatcgtt gtggccggcg ctccggccct gaatcgcgtc tcctggacgc cgtctggcct 2101 gcatgtctgc atcggcgacg aggccggcaa gctgtacgtt tacgatgtgg ccgagaatct 2161 ggcgcagccg tcgcgcgacg aatggtcgcg gtttaatacc catcttagcg agatcaagct 2221 caaccagagc gacgaggtct aggacaatag ttgttaactg gtagttaata gtcgatacgg 2281 aatcctggaa ggagcgtcct tgaatgaaat ttaattttgt attttttgta tcttttgtga 2341 tcccactgct ccttagttgt gtatagccca taactcgaaa ctcatccgca gtccaaatgc 2401 tcagaaactt caccctttcc cccccaaaaa aacaaagaaa tcaagggaaa ctgcaacatt 2461 ctctaggcaa ccacacagta actgtattag aaggtttatt taatgaaact cgacagaata 2521 tagagatata tatatacatg agcagtggaa gaagaactag aagttgctct ccccgcatgt 2581 ttgattggca tattcattaa tttgttatta gatattttcc cccaggtcca ttcccatttt 2641 caatcgataa tggcaatgga tctgccgaat gggatttatt attttgtaat tttattttgt 2701 ggaactaaaa agattgaagc atgatcattt aaccgactgt cgggcaggct gagagcaaca 2761 cataaataaa ttaaaaatgc tacatattat atacaacaac gtattaagct taaacctgag 2821 aagaagaaag acagagacta agaaggtcgg acaggaaaaa aaaacggggg ctcaggaatg 2881 agagcacgaa aggcactgaa gatcgaccga aagagcccaa aatgtaaatg tattagagcg 2941 aagcctattt aacgagatta aataaacata atatctatat acacatacaa