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LOCUS XM_017140783 2615 bp mRNA linear INV 09-DEC-2024 (Bap111), mRNA. ACCESSION XM_017140783 VERSION XM_017140783.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140783.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2615 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2615 /gene="Bap111" /note="Brahma associated protein 111kD; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056796" CDS 128..2320 /gene="Bap111" /codon_start=1 /product="basic proline-rich protein" /protein_id="XP_016996272.2" /db_xref="GeneID:108056796" /translation="MALPSNYKQIAVGGQGPGSAVVGGGGGSGGSGGGGGGSRSRSSG GGGGGDRNKDQTPIFTHSNYGNPAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPY MRYSKRVWDGVKAQHPELKLWELGKKIGAMWKLLAEEEKTEFIDEYEAEKLEYEKSLK AYHQTPAYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERRIDIQPAEDEDDQDEGYT AKHMAYARYLRNHRLINEIFSEAVVPDVRSVVTTTRMQVLKRQVSSLTMHQTKLEAEL QQMEEKFEAKKQRMVESSEAFQEELKRHCKPAVDEDTFQKMVHRMYEDIKRDRQRLDE PTAAAAAAPAAPPAAAAPVTRSEEPAVKPPTPSATPAGPQEAPVPPAAVPPPKETPAV KPATPTPTPPPAPPAVHVHETASKTDPEPMDIEPPPKPSVPPPPIKPEKLEMAAALPP QSTLVEPPPAKAEPAKASAKVTTPPPEAAAPVAAAPPTTATTTTTIPTPPPVQQQVPA PPPGMPQMPHPHPGHPPPGHSLMPPHLGPHQPPPGMPGLPPPPPPHTGYANYGGPPPP HGPPPGPPGGPARPQYYQPQYGGHPTPQPYYAPFSPYQQSYGPPPGSHYMSPRPPPPQ PQQHNGNPYAPEHGGNPPAQQPPPGPGQGHLHEPNGGGAGAGAGGGGGAAAAAVYPTP GAPGPGAPPPPQPPSAGEAAAAAAAGGGAAAAPTAPGKHPEAEKHEAD" misc_feature 422..616 /gene="Bap111" /note="high mobility group (HMG)-box found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 (SMARCE1) and similar proteins; Region: HMG-box_SMARCE1; cd21983" /db_xref="CDD:438799" misc_feature order(422..436,443..448,467..469,503..508,515..517, 524..529,548..550,560..562,569..571,581..583,590..592) /gene="Bap111" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:438799" polyA_site 2615 /gene="Bap111" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatcgactat cgatagcagc aacgccgaca gaaaatggcg tccgcctgaa agccagaaaa 61 ttgttgtctt tatttgctgt aaaatccacg ctcacttgac cagaccacca ggaaaaaggc 121 aaaaaagatg gccctgccga gcaactacaa gcagatagcc gtgggcggcc agggaccggg 181 ttcggcggtc gtcggaggag gcggcggcag cggtggcagc ggcggcggag gaggcggtag 241 ccggtcgcgc tcctccggcg gcggcggcgg tggcgatcgc aacaaggacc agacgcccat 301 cttcacgcac agcaactacg gcaatccggc gttcacgccc caaaaggtca ccaagtcgtc 361 gagcagcaag aaccagaacg aatcgcgtct gccgaagcca ccaaagccgc cggagaagcc 421 catcctgccg tatatgcgct actccaagcg cgtctgggat ggcgtgaagg cgcagcatcc 481 cgagctgaag ctctgggagc tgggcaagaa gatcggggcc atgtggaagc tgctggccga 541 ggaggagaaa acggaattca tcgatgagta cgaggctgag aagctggagt acgagaaatc 601 gctgaaggcc taccaccaga cgcccgccta ccaggcctac atgtccgcca agagcaaggt 661 gaagaccgac gtcgatatgc acgagacgcc gtcgcgcggc ggcggcagca agtcgcagca 721 cgagcggcgc atcgacatcc agccggcgga ggacgaggac gaccaggacg agggctatac 781 ggccaagcac atggcctatg cccgctacct gcgcaaccat cgcctgatca acgagatctt 841 ctcggaggcc gtggtgcccg atgtgcgctc cgtggtgacc accacgcgta tgcaggtgct 901 caagcggcag gtcagctcgc tgacgatgca tcaaaccaag ctggaggccg agctgcagca 961 gatggaggag aagttcgagg cgaagaagca gcgcatggtc gagtcgagcg aggccttcca 1021 ggaggagctc aagcggcact gcaagccggc cgtggacgag gacaccttcc agaagatggt 1081 gcatcgcatg tacgaggaca tcaagcgcga tcgccagcgg ctggatgagc caactgctgc 1141 ggctgcagct gctccggctg ctccccccgc cgccgctgct cctgtgacgc ggagcgagga 1201 gccagcggtg aagccgccaa cgcccagtgc cacgcccgct ggcccgcagg aggcgccagt 1261 gcctccggct gcagtgccgc cgcccaagga gacgccagct gtgaagccag ccacacccac 1321 acccactccg ccgccggcac ctccggcggt gcatgtccat gagacggcca gcaaaacgga 1381 cccggagccc atggacattg agccgccgcc gaagccctcg gtgccgccgc cgcccatcaa 1441 gccggagaag ctggagatgg ccgctgccct gccgccgcag tcgacgctcg tggagccgcc 1501 gccggcgaag gcggagcccg ccaaggcaag tgccaaggtg accacgccgc cgcccgaagc 1561 agcagctccc gtggcagcag ctcctccgac gacggcgaca acaacgacga cgataccaac 1621 gccaccgccg gtgcagcagc aggtgccagc tccgccgcca ggcatgccac agatgccaca 1681 tccgcatccc ggccatccgc caccgggcca ctccctcatg ccgccgcatc tggggccgca 1741 ccagccgccg ccgggaatgc cgggactgcc gccgccgccg ccaccgcaca cgggctatgc 1801 caactatggc ggaccaccgc caccgcatgg accgccgccc ggtccgcccg gtggacccgc 1861 ccggccgcag tactaccagc cgcagtacgg aggacatccc acgccgcagc cctactacgc 1921 gcccttctcg ccgtaccagc agtcctacgg gccgccgccc ggctcgcatt acatgtcgcc 1981 gcgtccgccg ccgccgcagc cgcagcagca taatggcaat ccctatgcgc ccgagcatgg 2041 aggcaatccg ccggcacagc agccaccacc gggtccgggt cagggtcacc tgcacgagcc 2101 gaatggagga ggagcaggag caggagcagg aggaggagga ggagcagctg cagcagcagt 2161 atatcccacg cccggtgcac caggaccagg agcaccacca ccaccacagc caccgtcggc 2221 tggagaggca gcagcagctg cagctgctgg cggaggagct gcggccgcac caacggcgcc 2281 tggcaagcat ccagaggcgg agaagcacga ggcggactga gaatgcagaa gatcctagtt 2341 gtagtcccta acttatacat atatgcatcg atccctgtgt tgtaacatag ctccactcca 2401 accgccgccc cctcttggaa ctccgccccc ttcaatttga atcccccttt aggcgcccgc 2461 atctccacaa aacccattat caattaagtt taacacacct tttttttcgc aatgcctaat 2521 tttaatattt taacaattga gtgtgcgtcg cattctggac tgtatgctaa atatacgagt 2581 aaaataaatg tacgtttata tgtaaatgaa gagaa