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LOCUS XM_017140767 8328 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017140767 VERSION XM_017140767.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140767.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8328 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8328 /gene="mei-P26" /note="meiotic P26; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056785" CDS 961..4626 /gene="mei-P26" /codon_start=1 /product="B-box type zinc finger protein ncl-1 isoform X1" /protein_id="XP_016996256.2" /db_xref="GeneID:108056785" /translation="MTTLEEPVLAVDTVDPCPPGPPSLKTVLSDDASNSSVLEEIDVS NTSSSSSSSSSSSSSSSGSCSGLGSGSGTDTDTGKGSSTVGSLDVTSSSSIGSAASIS STGSTAIAGPSGLLDDSNSSGLGIGMGIGMGMDMGMGMGMGLVVDVDSAGSSQELSSH GVTELDSLEDSCNGLMIKDGDKLCKLCSSRLVMPRILSCLHVFCEDCLQAVVSKDSMA ASSPNSCSSSSFDGSENQHRTLPALLLECPVCKQETPLGPKGVKGLTCDYIVTNILDL SNLESEHIVCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMRCFENHHVVRIEDLTKN VHDKLIIHKPVCCRQHVSENLKYYCFTCQVPACNDCLLSDHKGSDHHYETATVAEQAV RADLEQTLSEALKKADYCNDAGGNLGSALTELQSQHDTVRQQIEDAYKSYKRMLESIK EQMLNELGRLHSDRELKIMDLMQSMENNMGKLQQAAQFGQRAIDKANAVEFLLLKPVI NAQCLNLMEQTPKCDVNYQLQFDSKPEKFEQFAREMFGKFQTDQSDSSPKKQAMAQQQ QQQQQQQQQQQQQQQQQQQQHRQVQQQQQQQVQHQQLQLQQQQHSSNNLIVGHRGSSS VQGRLSSAVFSPISLPSSLQSSFDGDTNSVITNFSMMDSPPQTSSQQQLPTAQQQQQQ QQSQQQQQAVVLQQQKHQQHQQQQQQQQQVLHQQPSAQSMPPQMGQLVAPQGQLVQQA VNHVNLNSGPGPNISINGLGAGGPPPSFSMLEYNISRLASLTEPMPDSLNDALAVGGG AAGPVPNVAQVPGGSAVAGGGGAVVGAPHSHQQQQQQQQQQQAVMPASAVTPTQPITL ADILSGDQRALNNLQALAKLGLNNNDDDLLLNGSSTGIDFLSDFCMPPATSPSLQSLN PIVGGVEDMGLNNFHAVAAPGTTSVVTGRNKATPMQIRCKFGSLGTAKGQFNSPHGFC LGVDEEIIVADTNNHRIEVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVC DRGNERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPTVFVISEEG ELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFQDDGTFLYRIGNEKVTCFPN GIDISNAGDVLIGDSHGNRFHVACYSREGALQSEFECPHVKVSRCCGLKITSEGYVVT LAKNNHHVLVLNTLYVH" misc_feature 1501..1728 /gene="mei-P26" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(1510..1512,1519..1521,1555..1557,1561..1563, 1570..1572,1579..1581,1699..1701,1708..1710) /gene="mei-P26" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature 1813..1938 /gene="mei-P26" /note="B-box-type zinc finger superfamily; Region: Bbox_SF; cl00034" /db_xref="CDD:469587" misc_feature 1984..2115 /gene="mei-P26" /note="B-box-type 2 zinc finger found in Drosophila melanogaster brain tumor protein (BRAT) and similar proteins; Region: Bbox2_BRAT-like; cd19798" /db_xref="CDD:380856" misc_feature 2137..2499 /gene="mei-P26" /note="coiled-coil (CC) domain of Drosophila brain tumor (brat) and similar proteins; Region: CC_brat-like; cd20482" /db_xref="CDD:467844" misc_feature order(2146..2148,2155..2160,2164..2172,2179..2181, 2188..2190,2230..2235,2242..2244,2251..2256,2263..2268, 2275..2277,2296..2301,2308..2310,2317..2322,2329..2334, 2341..2343,2371..2376,2383..2385,2395..2397,2404..2409, 2416..2421,2425..2430,2452..2454,2461..2466,2473..2475, 2482..2487) /gene="mei-P26" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:467844" misc_feature 3793..4614 /gene="mei-P26" /note="NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; Region: NHL_brat_like; cd14959" /db_xref="CDD:271329" misc_feature order(3835..3855,3919..3921,3976..3987,4000..4002, 4054..4056) /gene="mei-P26" /note="putative Pumilio binding site [polypeptide binding]; other site" /db_xref="CDD:271329" misc_feature 3862..3972 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4003..4131 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4138..4248 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4258..4377 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4390..4509 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" misc_feature 4525..4605 /gene="mei-P26" /note="NHL repeat [structural motif]; Region: NHL repeat" /db_xref="CDD:271329" polyA_site 8328 /gene="mei-P26" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagtttgtca gttacgttca aacagttttt gttcgttctg cgttccagaa ttagttgtat 61 ttttttgttt atttactttt tccccgtttc tttttgtgtt ctttttgcct tcttacggtt 121 tcgttctttt gtgcaaaatt gtgtaatttt ctaataacca aggatcaacg atttctactt 181 tcttttgcaa atcccaaagg aacggcgctg tcgtccaatt tacgtcgccg tcttcttcgt 241 cagtgtttgt tgtcgtcgcc tcgttcgtcc ttaatattat ttcgtcctcg tacaacaaga 301 acaagaagaa gaagaagaac aaccacaacc aggatcaccg caatacgcag tttcccaatg 361 ctttaaaacg attcggcaac ctctaaggaa caaaaagaat atatacatca aatatatatt 421 atatatataa aaaagacaag cagcgaatca agaaccgaaa acaccaaata aacaaagata 481 taaagataaa gatataaacc caaagtcaaa ggaggctcgc aaaatttttt acaaatttgc 541 aatacatttt acatgagaag aaaagagaag ggaagaggag gagaaattgc aataggtgtg 601 tgtttgtgtg agttcgtcgt cgtctcagga taattttttc ccccggagag gcgaactgtt 661 gttgcaattg gaattcgcgg cgagaggaga gatctctatt ggaatggctc tcttgggaga 721 gcggcaggac attagggagc atcagcagca gcaggatcag cagtaaatag gagccagctc 781 aaaggaatca acaggggagg atcaggaatt aggaagcagg ataaaggaag cgggataaag 841 aagcgggata aaggaaacag gatataggaa accggaaaca tagcccaggc aaaaacagga 901 atcatttaaa tcaggaagac aaggacctaa gaaaccagga aagcgccaaa agaaaggacc 961 atgactactt tggaggagcc tgtcctggcg gtggacacgg tggatccgtg tcccccgggg 1021 cctcccagcc tgaagaccgt tctcagcgac gatgcctcga actcatcggt gctggaggag 1081 atcgacgtga gcaatacgag cagcagcagc agctccagct ccagcagctc cagttcgagc 1141 tctggatcct gctcgggctt gggatcggga tcgggcacgg atacggacac cggcaagggc 1201 agcagcactg tcggcagcct cgatgtgacc agctcctcga gcatcggatc ggcggcatcc 1261 atctcatcga cgggctccac cgccatcgcc ggaccctcgg gcttgctaga cgattccaac 1321 tcatcgggac tgggaatcgg tatgggaatc ggtatgggta tggacatggg catgggcatg 1381 ggcatgggac tggtggtgga tgtggacagt gccgggagca gccaggagct gagcagccac 1441 ggcgtcaccg agctggactc gctggaggac tcgtgcaacg gcctaatgat caaggatggg 1501 gataagctat gcaagctgtg cagctcgcgc ctcgtgatgc cgcgcatcct gtcctgcctg 1561 cacgtcttct gcgaggactg cctgcaggct gtcgtatcga aggactcgat ggcggccagc 1621 tcgccgaaca gctgctcgtc gtcctcgttc gacggcagcg agaatcagca ccgcactctg 1681 cccgcactgc tgctcgagtg ccccgtttgc aagcaggaga ctcccttggg gcccaagggg 1741 gtcaagggtc tgacctgcga ctatattgtg accaacatac tggatctctc caatctggag 1801 tcggagcaca ttgtgtgcac gtcgtgcaag agcaaagagg aggccatttc gcgttgcaac 1861 gattgcgcca acttcctgtg caacggatgc gacaatgccc acaagtatat gcgctgcttc 1921 gagaaccacc atgtggtgcg gatcgaggat ctgacgaaaa acgtccacga caagctgatc 1981 atccacaagc ccgtgtgctg ccgccagcat gtgagcgaga atctcaagta ctactgcttc 2041 acctgccagg tgcccgcctg caacgattgc ctgctgagcg atcacaaggg cagcgatcat 2101 cactacgaga cggccacggt ggccgagcag gcggttcgcg ccgatctcga gcagacgttg 2161 agcgaggccc tcaagaaggc cgactactgc aacgatgcgg gcggcaattt gggcagcgcc 2221 ctcacggagc ttcaatcgca gcacgatacg gtgcgccagc aaatcgaaga tgcctacaag 2281 agctacaagc gcatgctcga atcgatcaag gagcagatgc tcaacgagct ggggcgcctg 2341 cactcggatc gcgagctcaa gatcatggat ctgatgcaga gcatggagaa taatatgggc 2401 aagctgcagc aggcggcgca attcggccag cgtgccatcg acaaggccaa tgccgtcgag 2461 ttcctgctgc tcaagccggt gatcaatgcc cagtgcttga atctcatgga gcagacgccc 2521 aagtgcgatg tcaactatca gctgcagttt gactcgaagc cggagaagtt tgagcaattc 2581 gccagggaga tgtttggcaa gttccaaacg gatcagagtg actctagtcc caagaagcaa 2641 gcgatggccc agcagcagca acagcagcag caacagcagc agcagcagca acagcagcag 2701 cagcaacagc agcagcagca tcgtcaagtg cagcagcagc agcagcaaca ggtgcagcac 2761 caacaattgc agttgcagca acagcaacac agctctaaca atctgattgt gggccatcgg 2821 ggcagctcct ctgtccaagg acgcctgagc tcggctgtat tcagccccat ctcgctgccc 2881 tcctcgctgc agagttcctt cgatggcgac accaactcgg tgataaccaa cttctccatg 2941 atggactcgc cgccgcagac atcttcgcag cagcaattgc caactgccca gcagcagcag 3001 cagcaacagc agtcgcaaca gcagcaacag gcggtcgtgc tgcagcaaca gaagcaccag 3061 caacaccaac aacagcagca gcagcagcaa caggtgctgc accagcagcc atcagcacaa 3121 tccatgcccc cgcagatggg acagctcgtt gctccgcagg gacagctcgt ccagcaggct 3181 gtcaatcatg tcaatctcaa ctctggcccc ggtccgaata tatccataaa cggtttgggc 3241 gccggcggac cgccgcccag tttcagcatg ctggagtaca atatctcgcg acttgccagc 3301 ctgacggaac ccatgccgga cagcctcaac gatgctttgg ccgtgggggg aggtgccgct 3361 ggacctgtgc cgaatgtggc ccaagtgccg ggtggctcgg ccgtcgccgg cggaggagga 3421 gctgttgtgg gagccccgca ctcgcatcag cagcagcagc agcaacagca gcagcagcag 3481 gccgtaatgc cggcatcggc ggtaacgccc acgcagccaa tcaccctggc ggacatcctt 3541 tcgggcgacc agcgggcgct caacaatcta caggcgctgg ccaagctggg actcaacaac 3601 aatgatgatg atcttttgtt gaacggatcc tcaacgggca ttgatttttt gtcagatttc 3661 tgcatgccac cggccacatc gcccagcctg cagtccctca atccgatcgt gggtggcgtg 3721 gaggacatgg gactaaataa cttccatgcc gtcgccgctc ccggcaccac cagcgtggtc 3781 actggccgca acaaggccac tccgatgcag atccgctgca agtttggttc tttgggcacg 3841 gccaagggtc agttcaattc accccacggt ttttgcctgg gcgtcgacga ggagatcatc 3901 gtggcggaca cgaacaacca tcgcatcgag gtcttcgaca aaatgggcgc cctcaagttc 3961 cagttcggag tggcgggcaa ggaggagggc cagctctggt atccgcgcaa ggtggccgtc 4021 atgcataata atggcaaatt cgtggtctgc gatcgcggaa acgagcgctc ccgtatgcag 4081 atattctcca agtgcggtca cttcatgcgc aagattgcca tcagatacat tgacatcgta 4141 gcgggcttgg ctgttacggc taagggtcat atcgtggccg tggatagcgt gtcgcccaca 4201 gtgtttgtga tctccgagga gggcgaattg gtccgctggt tcgactgcag cgactacatg 4261 cgcgagccct ccgacatcgc tatacgagac aacgattttt acgtgtgcga tttcaagggc 4321 cattgtgtgg ccgttttcca ggacgacggc acattcctct atcgcattgg caacgagaag 4381 gtcacctgct tccccaatgg cattgatata tcgaatgccg gggacgtgct catcggcgac 4441 tcgcacggca accgcttcca cgtcgcctgc tactcacgtg agggcgccct ccagtccgag 4501 ttcgagtgtc cccacgtcaa ggtttcccgc tgctgcggcc tgaaaatcac atccgagggc 4561 tatgtggtga cgctggccaa gaacaatcat catgttctag tcctgaacac cctctatgtt 4621 cactgattgc aaatcaaagc gcgcaacaat cgtccatcag tcgatatgaa caaatacaac 4681 tacaaatact cgtcgggcaa gatatacgga tgccgacgtc agcagcaagc aaccaacatc 4741 ggcaacagca acagcaacag taatagcaac atcaacctat tggcaaggac tcagcctcaa 4801 ctatgcaaca gcaacatgag caacatgagc aacattagcc tcatttgcaa cggcagcaac 4861 atcaatcaac agccgtcgtc gacgacaaca ccatcagtca tttaatagaa gagttaagca 4921 agaattagca gtgtgttgct aagcaagaaa agcaagcaaa acaagctgaa gcaacaacat 4981 tatgaacagc aattgcaata atccagacat atatatagga caaagtatat atatgtggaa 5041 aaagggggaa agcaaaatct cgaaacacca aaaatccttt taaatcacaa caagaaacgt 5101 tgccgtttca tgagccacag caactgtata aaacaaaaaa cgaaaaacaa aaaaccaata 5161 acaaaatgat aaacaaaatg caacaaatac tatttttgat ctctaattta aaaacaatta 5221 gcgctactac taaaaaacaa acatcaacaa atctaacaaa aagaaaaaca aaaatatttt 5281 acctagtata acgagtaaca aacaacaagc aagaagaaaa aacaacaaac aaagcaaaca 5341 aagaaaacca aaacaaaaac taaaacttgg gatattttaa aaatgttttt taaaaactct 5401 ttttaaattg ttttttaatt atgctttttt cattgaattt atgttcttgt taaaaattgt 5461 cataaaaaca cacactcaca catacacgta cacacgccac actcacacaa actctactac 5521 tttacatgtt acttattatc tatatagaca tatatattgt tatatcgacc gattagcttt 5581 tttgtgcata cccttccaga atctttttct aaaaaacaaa aaaaaaacga aacacgcata 5641 tatatatcta cacctagtat acaacatcta tgtatatcta gcaaaatgtg caacttttgt 5701 gcacaggttt tttgctaaca attatggaag taaataattt gttgagggcg tcatcagagg 5761 tcgcgtacag gcaataatta tagaagaaga tgaaatctaa gtagtttatt ttgatttcaa 5821 actgaaacca aacactaaga taaaagttca gaaaataaaa aactgtttag gtttttcctt 5881 acgctgctta tataaggtga tatctattta tatataaatc tatatgaata tataaaaaaa 5941 acaaaacaaa acaaaaacta tatatatctt aaacatatat gtgaaatcct atgactatat 6001 gactttgcca tataatatac aaagcaggac gagagagtag ggagttaggc atagggatag 6061 cgagggacgg aggacgaagg acgaagggac gaaaggacga aaggaggcaa cacacactac 6121 accacacggc cacacggcag atatgtgtcc gcgaatatcc agagacgacc gacccagaga 6181 atacattcga tatgtatcaa ctaattgcgt tcttcacgcc agaaatccaa caagaactac 6241 agacaacaaa ctcaacatac aaattaatct gtaagctaac aaaccaaaca aaacgaatgc 6301 aaatcgcatt aggccaacaa ctatataact aaaacagcag agacaacaac aaaaagcgtt 6361 aaaaaaccta caaacgtatc tgttaagttc ttatatacat tgttaaaaaa aaaaccaaca 6421 aacaaacaaa aaacaaatat tccttttgct tatatacaaa acaaatgcaa tacacgtgca 6481 tgtaatcgac atacacacac cacaaacaca acacccacac cactcacgat ttatatagac 6541 gatatagaca accatttaag atgatatatg tacggatacg tgcaacattt ctttcccgtt 6601 gtaatacaat ataaggctgg tttactccca agacattatt atttatctat atacaaaata 6661 acatttttta attgtgtgaa ttttatcatg tgagaatcga gaagcgagaa acgataggta 6721 gaacaacatg taacgtttta tttagatgaa gttgggcgag aaagcaaagc gaagcaagca 6781 acttattttt tataggctgt aaccacattt attatacatc cacatcatac gtttacattt 6841 acatttaaac acctaactca cttacacaac acacaacata caacgaaacg aatcctttgc 6901 attgtgaaca atatcctgtt cgttttgttc aaaactattc gattcctttt caatgtttca 6961 aacagcagaa aaaattatgt taaaacccat ctttggcatt tgtgtctcac aatgcggaga 7021 taagtgaaga aaactgtttt aaatcttgtc atttttttag ttattaattt ttaattttta 7081 attttagtct tagcatatac acaacacaaa acaaaactat taaaatcgcg attatgttta 7141 cgttaaatgt taagttgttc tatttaagca aatggacgat tacgaataga gaaaccattt 7201 gcttaacaat catttactac tgtcatattg tgtaactata attatttttg tttagttttt 7261 acgttgttac gtgtgaggct acacagttct gtatacataa ttataattta gcttaagtgt 7321 aatctataaa ccactacatc aaccaatgtg aaacgcttct gattatgtta taccactgaa 7381 attataaaca tttaactata aacattatga ttatgatgat agtatgtacc ccaaagttgt 7441 tgatggtaga cgagaaggtc ttagaaaggg aagaacgatt atgagcgatg agcgaaagag 7501 agagcgagag agagggtaaa aaatgcaatt ttttgtgaaa caatttggct gttgaaatat 7561 ataattttta atttaattat gtttttgcat ttcgtttact ataacttagg ccccaagcaa 7621 atgttatatt attgaattga atttatcgcg atttccttag acctttcctt ttacattttc 7681 gcatacacat tttttttttg attttgtcgc tgcattaact acggaagtat taagaggaaa 7741 cattttgcta aagacaatgg aaacactcaa atgcaaagta taccaaaaga tttgatttta 7801 atttcttctc ctaattgtgt ttgtattttt tacattttac attttacttt taactcttaa 7861 ctttttactt cactgtgcga gctactttat tatttttatt tttcttaata acttcatgtt 7921 tccttatact ttgtcctcgt cttagtcaac agagtgtctg taaaacaaaa atataaaatc 7981 aaactcgaaa actgttatag aaaaaacaac aaaaattacc attttaaatt tgtttatagt 8041 ttttatggaa agccttcaaa tgaaattgta attccacacg cttttatttt ataaactaaa 8101 accgaaacat aaagaggtaa acatttatta tcttaatttt gtgtttaatt tttatttctc 8161 tctctttgtt gaaccaaaaa atggcaaaaa gtcaattgtt gctttaaaga aaattgcaaa 8221 tttttaatta aatttaagtt tactatgaaa atgatattaa gtgaaaccgt atatgatttt 8281 tatgcgatgc gatgcgttta agtagaaaaa aaaaacaaaa acaacaac