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LOCUS XM_017140766 2065 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017140766 VERSION XM_017140766.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140766.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2065 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2065 /gene="His3.3B" /note="Histone H3.3B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins" /db_xref="GeneID:108056784" CDS 140..550 /gene="His3.3B" /codon_start=1 /product="histone H3.3A" /protein_id="XP_016996255.1" /db_xref="GeneID:108056784" /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" misc_feature 140..547 /gene="His3.3B" /note="histone H3; Provisional; Region: PTZ00018" /db_xref="CDD:185400" misc_feature order(257..283,287..289,329..340,347..349,356..358, 389..400,488..496,500..502) /gene="His3.3B" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:467036" misc_feature order(272..274,281..283,290..295,302..307,311..313, 317..319,323..328,338..343,347..355,359..364,368..370, 374..376,383..397,401..406,413..418,425..433,437..445, 449..457,464..466,491..505,515..517,524..526) /gene="His3.3B" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:467036" misc_feature order(284..286,293..298,305..310,314..316,422..424, 434..436,443..445,464..466,476..478,491..493) /gene="His3.3B" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:467036" misc_feature order(458..460,467..472,479..484,488..490,506..511, 518..523,527..535) /gene="His3.3B" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:467036" polyA_site 2065 /gene="His3.3B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttcctgc aggctgctgc tgctgcacta ctgcgcctgt gccggccgaa aagttcagag 61 ttcgtggcaa gttcctggca gtcgagtttt atttctcacc tggaaaggat cgccgagttc 121 tttggtttaa gaagttaata tggcccgtac taagcagacc gctcgtaagt cgaccggagg 181 aaaggctccc cgtaagcagc tggccaccaa ggcagcccgc aaatcggcgc catccaccgg 241 cggtgtgaag aagccccatc gttatcgtcc cggaaccgtc gctcttcgtg agatccgtcg 301 ctaccagaag tcgaccgagc tgctcatccg caagctgccc ttccagcggc tggttcgtga 361 aattgcccag gatttcaaga ccgatttgcg tttccaatcg gcggccatcg gcgcccttca 421 ggaagcttct gaggcgtacc tagtgggtct cttcgaggac accaacttgt gcgccatcca 481 cgccaagcgc gtcaccatca tgcccaagga catccagttg gcgcgtcgca tccgaggcga 541 gcgtgcttaa gctggatgct ggccaggagc agaaggatcg atcgctgtcg tccattcccg 601 aacaacagac cattctgatt tgctacgtct tggtttcgtt gagggagcgc agccagaaga 661 agctgaagaa gaacgacact ttgatccaat ccatcattca tatttacatg tatacattta 721 tcatcctttt gttgttcaat cggatcgtca gatcgatgtc gatgcgatga agaagaagaa 781 cactaccacc acactaccac aaaaaacaac acacaacatt actgtaatgc taaaacacat 841 atttgtaatt cttattatta ctattatata ttagttgcta agtttttttt ctcgcccgcg 901 tgtcgacggt tgaattttcg ttgacgatgt accgcgctgc cttccgccca atttcgagtc 961 cacccactgg atactatggg aaaggggatg cccccgagcg gccgtcgtcg cctgtccgtc 1021 tgcaacatcc gccaccaaca actccaacaa ctgtccggcc ggcagacccc gatttcgaga 1081 gatccgtggt tcttaaggcg cctgctcctc cgggagtcga acatctggct gccgggagcc 1141 gcggaactgg agatcggggc caacgtaacg ccggcggggc gtggcaaggc ggacagacgg 1201 ctgcggacga gcggcgggca atcccggatc ttcggagggg cggcgagggc gtggccatcg 1261 ggcggtcaac acggagacac ggggcattta acatatgatg aagatgatat ccgcatataa 1321 caccgaagac cgaattgagt acacttaact ttacacttac gtatatgcat atatacataa 1381 atatatatat aaatctatat ctatatatat atatatatag agaagaaaaa caaaaacact 1441 agacattaat actctttatt ttgttcacct tccgttactg caaatcgcat acagagcatg 1501 atatatatat atttctggat atatatgtac atttaacgaa gggatgggcg tgacagagtt 1561 agttgattaa ataagatttt agatttacat gcattttata cgtttaggcg gacgaagtag 1621 tagaggagca gaaaagatgg aaaagatata taaagatgat tcagcaatca aattaataat 1681 acacgtctat agatttgaaa gagcatcgaa taataataac cgaaacacaa aacagcattg 1741 aatatttctc aatatttata tgtagttgaa acacatgcaa aataatcaat tctaaacgcc 1801 cataaatata tacatatata tacatatact tgtaaattgg tgtcgataac tagtttcaca 1861 ttgaacattt aaacaaatcg ggctaaatat gtgtctatat cgtatcgtag cttacaagaa 1921 ccgatgaaaa caagaaacaa tcccccgaaa aacaaagatc aactaaaaac agtgacagca 1981 acagcaaaaa taactggaaa catcagcaaa aaaaaataac aaaaaaataa acggtttttt 2041 ctatagaaga aaccaaaaaa cccaa