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LOCUS XM_017140765 2076 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017140765 VERSION XM_017140765.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140765.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2076 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2076 /gene="His3.3B" /note="Histone H3.3B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins" /db_xref="GeneID:108056784" CDS 151..561 /gene="His3.3B" /codon_start=1 /product="histone H3.3A" /protein_id="XP_016996254.1" /db_xref="GeneID:108056784" /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" misc_feature 151..558 /gene="His3.3B" /note="histone H3; Provisional; Region: PTZ00018" /db_xref="CDD:185400" misc_feature order(268..294,298..300,340..351,358..360,367..369, 400..411,499..507,511..513) /gene="His3.3B" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:467036" misc_feature order(283..285,292..294,301..306,313..318,322..324, 328..330,334..339,349..354,358..366,370..375,379..381, 385..387,394..408,412..417,424..429,436..444,448..456, 460..468,475..477,502..516,526..528,535..537) /gene="His3.3B" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:467036" misc_feature order(295..297,304..309,316..321,325..327,433..435, 445..447,454..456,475..477,487..489,502..504) /gene="His3.3B" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:467036" misc_feature order(469..471,478..483,490..495,499..501,517..522, 529..534,538..546) /gene="His3.3B" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:467036" polyA_site 2076 /gene="His3.3B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caatccgaac ggtattattt gtaaatagct cccttggtca tactatctca ttgtgaaatt 61 ttctcccgtc cgaaattgtt cgttctcgcg ttaaaataaa attatttgtg aaaatcattt 121 tctgtcgtgt tcaacgttta agaagttaat atggcccgta ctaagcagac cgctcgtaag 181 tcgaccggag gaaaggctcc ccgtaagcag ctggccacca aggcagcccg caaatcggcg 241 ccatccaccg gcggtgtgaa gaagccccat cgttatcgtc ccggaaccgt cgctcttcgt 301 gagatccgtc gctaccagaa gtcgaccgag ctgctcatcc gcaagctgcc cttccagcgg 361 ctggttcgtg aaattgccca ggatttcaag accgatttgc gtttccaatc ggcggccatc 421 ggcgcccttc aggaagcttc tgaggcgtac ctagtgggtc tcttcgagga caccaacttg 481 tgcgccatcc acgccaagcg cgtcaccatc atgcccaagg acatccagtt ggcgcgtcgc 541 atccgaggcg agcgtgctta agctggatgc tggccaggag cagaaggatc gatcgctgtc 601 gtccattccc gaacaacaga ccattctgat ttgctacgtc ttggtttcgt tgagggagcg 661 cagccagaag aagctgaaga agaacgacac tttgatccaa tccatcattc atatttacat 721 gtatacattt atcatccttt tgttgttcaa tcggatcgtc agatcgatgt cgatgcgatg 781 aagaagaaga acactaccac cacactacca caaaaaacaa cacacaacat tactgtaatg 841 ctaaaacaca tatttgtaat tcttattatt actattatat attagttgct aagttttttt 901 tctcgcccgc gtgtcgacgg ttgaattttc gttgacgatg taccgcgctg ccttccgccc 961 aatttcgagt ccacccactg gatactatgg gaaaggggat gcccccgagc ggccgtcgtc 1021 gcctgtccgt ctgcaacatc cgccaccaac aactccaaca actgtccggc cggcagaccc 1081 cgatttcgag agatccgtgg ttcttaaggc gcctgctcct ccgggagtcg aacatctggc 1141 tgccgggagc cgcggaactg gagatcgggg ccaacgtaac gccggcgggg cgtggcaagg 1201 cggacagacg gctgcggacg agcggcgggc aatcccggat cttcggaggg gcggcgaggg 1261 cgtggccatc gggcggtcaa cacggagaca cggggcattt aacatatgat gaagatgata 1321 tccgcatata acaccgaaga ccgaattgag tacacttaac tttacactta cgtatatgca 1381 tatatacata aatatatata taaatctata tctatatata tatatatata gagaagaaaa 1441 acaaaaacac tagacattaa tactctttat tttgttcacc ttccgttact gcaaatcgca 1501 tacagagcat gatatatata tatttctgga tatatatgta catttaacga agggatgggc 1561 gtgacagagt tagttgatta aataagattt tagatttaca tgcattttat acgtttaggc 1621 ggacgaagta gtagaggagc agaaaagatg gaaaagatat ataaagatga ttcagcaatc 1681 aaattaataa tacacgtcta tagatttgaa agagcatcga ataataataa ccgaaacaca 1741 aaacagcatt gaatatttct caatatttat atgtagttga aacacatgca aaataatcaa 1801 ttctaaacgc ccataaatat atacatatat atacatatac ttgtaaattg gtgtcgataa 1861 ctagtttcac attgaacatt taaacaaatc gggctaaata tgtgtctata tcgtatcgta 1921 gcttacaaga accgatgaaa acaagaaaca atcccccgaa aaacaaagat caactaaaaa 1981 cagtgacagc aacagcaaaa ataactggaa acatcagcaa aaaaaaataa caaaaaaata 2041 aacggttttt tctatagaag aaaccaaaaa acccaa