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LOCUS XM_017140760 7909 bp mRNA linear INV 09-DEC-2024 (east), mRNA. ACCESSION XM_017140760 VERSION XM_017140760.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140760.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3181 JARPSC010000001.1 15961594-15964774 3182-3317 JARPSC010000001.1 15964839-15964974 3318-3551 JARPSC010000001.1 15965716-15965949 3552-4024 JARPSC010000001.1 15966766-15967238 4025-4194 JARPSC010000001.1 15967303-15967472 4195-6760 JARPSC010000001.1 15967536-15970101 6761-7909 JARPSC010000001.1 15970103-15971251 FEATURES Location/Qualifiers source 1..7909 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7909 /gene="east" /note="enhanced adult sensory threshold; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056781" CDS 32..6892 /gene="east" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: uncharacterized protein east" /protein_id="XP_016996249.3" /db_xref="GeneID:108056781" /translation="MSSRKPPGGSGGADEATIITASSLDDNANASVEIPASSEEPSAG EGEGAGAGELAISIKASTPTPPVEAAEESPATEGEAEKELEAKDIQAKTPTSSTSDAV AAKSLRVTRLSSPLLLPSSPTTSRREAGDAALDIGEEQTSSSAGQRKSSVERSMAPVI RGRKSIKDLKEAKEVKSEEAPPAEAAEELVGEGNESLESPPATDKKDHKDTKDKEEDK QKDVQDAGIKSAEKEKSVEKEKEADKDKEKDKEKPKEAVTPVTPVTPTCNRVTRKSHA QEQLVVNTRVTRNRRQSATAAASLAATSLAATVAEQLPPARGRRKKPVAPPVEPAVKR KRSQDADADPEATSSAKFSKVEQLVKLEEVEAPADEDPVTIKQEPLDASEVGLSLSPS VTPAPISGSRRGRGRPQNRNSSSPAATTRATRLSKAGSPGILAQAPEPAPPKRRRVGS STRKTASASSLGGAAGDEDSKDSMASSMDDLLMAAADIKQEKLTPDFEDSQLLVAEGL PSTSGASNASANGHSCIEPLTVDTESVEKPAEPEAKPKESPAAAAVDESASAAAEKAP SLSPEMISEGVSAVSVRKFYKKPEFLENNLGIEKDPELGEIVQTVSSNDVESVTPQTE EHNEKEVDQKEEKEEEQPEKPEIVTEDVSEVLAEVPPEIPPEIPLEIPVEITREAAEE ETCSNSSLKAGELRLEESTEEPELLLDDGLVVNGDEIALEQQQQQQQPPAEEEVRIFH SEEYDDFEHEIMEELAKEGVLDASGNALSQQQAESKEAPSPADEMVAMEVEESYVDIK QPTDQLEEEPEDNKENLSAVSTAAEALDIQIELKENVDDEEEKPLAELMEVSKEADGV DEKPPNGKQEEEEEEPENQLQSLRQEQEIHLQNLGLLTHQAAEQRRKILLEAQARQAQ MQLQLQQHNQHKRQGARGGGGSGGGSATHVESSGTLKTVIKLNRSSNGGVGTVIHGGS GSSSASAASSTSSSSVGSATRKSSGVLSSAAVAGAGVRRQSLKMTFQKGRARGHGAAD RSADQYGAHAEDSYYTIQNENEGARKLYVSSGNPGRKTNNRFSSTNNQQSSVASNLHG SNSALQYYSSHSESQGQTEHGFYQTVKKDEKEKILIPEKASSFKFHPGRLCEDQCYYC SGKFGLYDTPCHVGQIKSVERQQKILANEEKLTVDNCLCDACFRHVDRRANAPSYKKR LSAPGHLETGVGSSAAAAALEKHFDSVIPEASGETAAVSAGEASASGSAGPHHRSCAV KECLEAAGHSLRRKCIRKSVKKFQLSLEIPAGSSIVWLCEAHYNTVIQFSGCVLCKRR LGKNHMYNITTQDTDRLEKALAEMGIPVQLGMGTAVCKLCRYFANLLMKPPDSTKSQK AEFVKNYRKRLLKVHNLQDGSHEMSEADEEEAPKATAEGQEEEDAEMPLVVDYDGPTD SNSSSSSSTKQMSKLQAILQQNLGAEGATAGSGAAPPTGASGSSATGADISNVLRGNP NISMRELFHGEEELGVHFKVPFGCSSSQRTPEGWTRVQTFLQYDEPTRRLWEELQKPY GNQSSFLRHLILLEKYYRNGDLVLAPHASSNATVYTETVSQRLNSFDHGHCGGLGNPS AAPSSSSSSKRSGIPQPAGASVLATALTTPSSSSSSGCLSAEQQASVVDPVIPLVELN DDDDGEEGATAGKAVDGEESSVDKLTKQLSSNAVTIIARPKDKSQLSSNSGSSTSLSS SSSAISSPEEVAAAAAPAPQSKEAPPLVPAAGGNSRSILKTNLLGIGKAVEIVPLTPA AAASAPSASSAPVNVESMLTSIISKTSKSTACHIPEILEAANLASDFAKLQGLQAAIR LQSKLKPPMGAGTSAPQKPPNLAQLQSSPPELISLHRRRTSGAAAAPPANSLLGNPPG KRLQLARTGAGPSAGTGTGTSAAGGRAPPPNVVILPDTLTPQERHESKSWKPTLIPLE DQHKVPNKSHALYQTADGRRLPALVQVQSGGKPYLISIFDYNRMCILRREKLLRDQML KANAKQKPQQQQQAAQGSGSGSGSHHSAASAAAFSNMVKLAQQHTARQQLQQLQQKQQ HQQQQMPTLQPGGGGGGGAAGGAAGVRLARLAPKPMPPLTNPQIGSQAPSFQPLLPSP LDNSNSSWLWKNFPDPNQYLLNGNGGGGGGGGTSAASKLPHLTAKPATATSSSSGGGG GSKSAGSLFALKQQQHQQKLIENAIMSKIPKSLTVIPQQMGSNAGGEMGGGGSPPART DDGGGGRGQEEQRWPPGGAAGSTRGDMDITNSTIPWLH" misc_feature 968..>1462 /gene="east" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" polyA_site 7909 /gene="east" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcggcagca gctgcccagg gcccctcgag gatgtctagc cggaagccgc caggaggctc 61 tggaggagct gatgaggcca caataataac agcctcctcc ctggacgaca atgccaatgc 121 cagcgtggag attccggcca gcagcgagga gccatcagcg ggcgaaggcg aaggagcagg 181 agcaggagag ctggccatca gtatcaaggc gagcactcca acgccgccag tggaggcggc 241 tgaggagtcg ccagcaacag agggggaagc tgaaaaggag ctggaagcca aggatatcca 301 agccaagacg cccacgtcca gcaccagtga tgcagtggcg gccaagagcc tgagggtcac 361 ccggctctcg tcgccgctgc tcctgcccag ctcgcccacg accagcaggc gtgaggccgg 421 cgacgcagca ctggacatag gcgaggagca aacatcatcg tcggccggcc aaaggaagag 481 ctctgtggag cgatccatgg cgccggtcat acgcggacgc aagtccatca aggatctaaa 541 agaagccaaa gaagtcaagt ccgaggaggc gccgccagca gaagcagcag aggagctagt 601 cggcgagggc aacgagtccc tggaatcccc gccagccacg gacaaaaaag accacaaaga 661 cacaaaagac aaggaggagg ataagcaaaa ggatgtccaa gatgcaggaa taaaatctgc 721 agagaaggag aaatctgtgg agaaggaaaa ggaggcagat aaagataagg agaaggacaa 781 agagaagccc aaggaggcag taactccagt aactccagtg actcccactt gcaaccgcgt 841 cacccgcaaa tcgcatgccc aggagcagct ggtggtcaac acgcgggtca cgcgcaaccg 901 tcgccaatcc gccacggcgg ccgcctcctt ggcagccaca tccttggcgg ccacagtcgc 961 cgagcaactg cctcccgccc gcggtcgccg gaagaagcca gtggctccgc cagtggagcc 1021 tgcggtgaaa cgaaagcgat cccaggacgc agacgccgat ccggaggcca ccagcagcgc 1081 caagttcagc aaggtggagc agctggtgaa gctggaggag gtggaggcgc cagccgacga 1141 ggatccagtg accatcaagc aggagcccct ggatgcgagc gaggtgggcc tatccctatc 1201 gccatcagtc acgcccgctc cgatttcggg cagccgacgg ggacgcgggc ggccgcagaa 1261 caggaactcc tcctcgccgg cggccaccac gcgagccacg cggctcagca aggcgggatc 1321 gccgggcatc ctggcccagg ctcccgaacc ggcgcctcca aagcgacgac gagtgggctc 1381 cagcacgcgg aaaaccgcct cggccagctc gctgggcggc gccgccgggg acgaggactc 1441 caaggacagc atggcctcgt ccatggacga cctgctgatg gccgccgcgg acattaagca 1501 ggagaagctg acgccggact ttgaagacag ccagctgctg gtggcagagg gcctgccctc 1561 cacttctggt gcctctaatg cctccgccaa tggtcattcc tgcatcgaac cgctcaccgt 1621 ggacacggag agcgtggaga agcccgctga gcccgaggcg aagcccaagg agtcgccggc 1681 ggcggccgca gttgatgaat ccgcatccgc agcggcggag aaggcgcctt ccctcagtcc 1741 cgagatgatc agcgagggcg tgagtgcggt gagtgtgcgc aagttctaca agaagcccga 1801 gttcctcgag aacaacctgg gcatcgagaa ggatccggag ctgggcgaga ttgtccagac 1861 ggtcagcagc aacgatgtgg aatcggtaac tccgcaaacc gaagagcaca atgaaaagga 1921 ggtggatcag aaggaagaaa aggaggagga gcagccagaa aagccagaaa ttgtaaccga 1981 agatgtctcc gaagttctgg ccgaagttcc acccgaaatt ccacccgaaa ttcccctcga 2041 aattccagtg gaaatcacaa gagaagccgc cgaggaagag acctgttcga attcctccct 2101 gaaggcaggg gaactccggc tggaggagag cacggaggag cccgagctgc tgctggacga 2161 tggcctcgtg gtcaatggcg atgagatcgc cttggagcag cagcagcagc agcagcagcc 2221 gccggcggag gaggaggtgc gcatcttcca ctcggaggag tacgatgact tcgagcacga 2281 gattatggag gagctggcca aggagggtgt gctggacgcc agtggcaatg cgctgagcca 2341 gcagcaggcc gaatccaagg aggctccctc gcccgccgac gaaatggtgg ccatggaggt 2401 ggaggaatcc tacgtggaca tcaagcagcc gacggatcaa ctggaggagg agcccgagga 2461 caacaaggag aacctgtcgg cggtcagcac ggcggccgag gctctggaca tccaaataga 2521 actcaaggag aacgtcgacg acgaggagga gaagccgctg gccgagctga tggaggtgtc 2581 caaggaggcg gatggcgtgg acgagaagcc gcccaatggc aagcaggagg aggaggagga 2641 ggagccggaa aaccagctgc agagtctgcg gcaggagcag gagattcacc tgcagaacct 2701 gggcctgctc acccaccagg cggccgagca gaggcgcaag attctgctgg aggcgcaggc 2761 tagacaggcg caaatgcaac tgcagctgca gcagcacaat cagcacaagc gacagggagc 2821 gaggggagga ggaggcagcg gaggaggcag tgccactcat gtcgagtcca gcggcactct 2881 gaagacggtc atcaagctga acaggagcag caacggcggc gtgggcacag tgatccacgg 2941 cggcagtggc tcctcctccg cctccgccgc ctcctcgacg tcctcctcct cggtgggcag 3001 tgccacgcgc aagtcgagcg gcgtcctaag ctcggcagcg gtagcgggag cgggagtgcg 3061 ccgccagtcg ctcaagatga cattccagaa gggtcgggct cgtggtcacg gagccgcaga 3121 ccgatccgcc gatcagtatg gcgcccacgc cgaggactcg tactacacga ttcagaacga 3181 gaacgaaggt gcgagaaagc tttatgtgag ctcgggtaat cccggccgca agaccaataa 3241 ccgtttcagc tcgactaaca accaacaatc ctcggtagca agcaacctgc acggtagcaa 3301 ctcggcgctc cagtactatt cctcgcattc ggagagccag ggacaaacgg agcacggctt 3361 ctaccagacg gtcaagaagg acgagaagga gaagatcctc attccggaga aggcctcctc 3421 gttcaagttc cacccggggc ggctgtgcga ggaccagtgc tactactgca gcggcaagtt 3481 cgggctctac gacacgccct gccatgtggg ccagatcaag tctgtggagc gccagcagaa 3541 gatcctagcc aacgaggaga agctgacggt ggacaactgc ctgtgcgacg cctgcttccg 3601 ccacgtggat cgccgggcga atgcgccctc ctacaagaag cgcctctccg cgccgggtca 3661 tttggagacg ggcgtgggca gctcggcggc ggcggctgct ttagagaagc actttgactc 3721 cgtaattccg gaggcaagcg gagagacagc ggcggtttca gcgggagagg catccgcttc 3781 cggatccgct ggcccgcatc atcgctcctg tgcggtcaag gaatgcttgg aggcggccgg 3841 acactcgctg cggcgcaagt gcatccgcaa gagcgtgaag aagttccagc tcagcctgga 3901 gattcccgcc ggctcctcga tcgtgtggct ctgcgaggcg cactacaaca cggtcatcca 3961 gttctccggc tgcgttctct gcaagcggcg gctgggcaag aaccacatgt acaacataac 4021 cacgcaggac accgatcggc tggagaaggc gctcgccgag atgggcatcc cggtgcagct 4081 gggcatgggc actgccgtct gcaagctgtg ccgctacttt gccaatctgc tgatgaagcc 4141 gccggacagc accaagtccc agaaggcgga gtttgtcaag aactacagga agaggcttct 4201 caaggtgcac aatctgcagg acggcagcca cgagatgtcc gaggcggacg aggaggaggc 4261 ccccaaggcg accgccgagg ggcaggagga agaggatgcc gagatgcccc tggtcgtgga 4321 ctatgacggg ccaaccgact ccaattcgag cagttcttct tccactaagc agatgtccaa 4381 gctgcaggcc atcctgcagc agaatctggg agcagaggga gcgacagcag gatcaggagc 4441 agctcctcca accggagcca gcggatcaag cgcaactgga gctgatatct cgaacgtgct 4501 gcgcggcaat ccaaacatct cgatgcgcga actcttccac ggcgaggagg agctgggcgt 4561 gcacttcaag gtgccgttcg gatgcagcag cagccagcgg acgccggagg gctggacgcg 4621 ggtgcagacc ttcctgcagt acgacgagcc gacgcgacgc ctctgggagg agctgcagaa 4681 gccgtacggc aaccagagct ccttcctgcg ccacctgatc ctgctggaga agtactaccg 4741 caacggggat ctcgtcctgg cgccgcacgc ctcctcgaat gccaccgttt acacggagac 4801 tgttagccag cgactgaatt ctttcgatca cggccactgc ggcggattgg gcaatccttc 4861 ggcggcccct tcttcctcct ccagcagcaa gcgcagcgga attccgcagc ccgcgggagc 4921 cagtgtgctg gccaccgccc tcacaacgcc ctcctcatcc tcatcctccg gatgcctttc 4981 agccgaacag caggcatcgg tggtggatcc cgtcattccg ctggtggagc taaacgatga 5041 cgatgatggc gaggagggag cgacagcagg aaaagcggtc gatggagagg agtcttcggt 5101 ggacaagctg accaagcagc tcagctcgaa tgcggtgacg attattgccc gcccgaagga 5161 taaatcgcag ctctcctcga acagcggatc ctcgacatcc ctttctagtt cctcctcggc 5221 catttcttcg cccgaggaag tggccgccgc cgctgcaccc gcaccacagt ccaaggaggc 5281 accgccactg gtgcccgctg ccggcggcaa cagtcgcagc atcctgaaga ccaatctcct 5341 gggcatcggc aaggccgtgg aaattgtgcc gctgaccccc gccgccgccg cctcagcccc 5401 ctcggcctcc tcagccccag tcaatgtgga gtccatgctc acatccatca tctcgaagac 5461 cagcaagtcg acggcctgcc atatacccga gattctcgag gcggccaact tggccagcga 5521 ctttgccaag ctgcagggcc tccaggcggc catcaggctg cagtccaagc tgaagcctcc 5581 catgggagcg ggaactagtg ccccacagaa gcctccgaat ctggcccaat tgcaaagctc 5641 gccgccggag ctaatcagcc tgcatcgacg gcggacgagc ggagcggcag cggcgccgcc 5701 ggcaaacagt ctgcttggaa atcctcccgg caagcgactg caactggcac gaactggagc 5761 agggccttca gcgggaacgg gaacgggaac gagcgccgca ggaggacgcg caccgccgcc 5821 caatgtggtc atactgccgg acacgctaac gccccaggag cggcacgaga gcaagagctg 5881 gaagcccacg ctgataccgc tggaggatca gcacaaggtg ccgaacaagt cgcacgccct 5941 ctaccagacc gccgacggcc gcaggctgcc cgccttggtg caggttcagt ccggcggcaa 6001 gccatacctc atctccatct tcgactacaa ccgcatgtgc attttgcggc gggagaagct 6061 gctgcgcgac cagatgctca aggccaacgc caagcagaag ccgcagcagc agcagcaggc 6121 ggctcaggga tcgggatcag gatcagggtc gcatcactcg gccgcatcgg cggctgcctt 6181 ctccaacatg gtgaagctcg cccagcagca cacggctcgc cagcagttac agcagctgca 6241 gcagaagcag cagcatcagc agcagcaaat gcccactttg cagccaggtg gcggaggagg 6301 aggaggagcc gccggaggag cagcgggcgt caggctggca cggctggcgc ccaagccaat 6361 gccgccgctg accaatccgc agattggcag ccaggcgccc agcttccagc cgctgctgcc 6421 cagtccgctg gacaacagca acagctcctg gctgtggaag aactttcccg atcccaatca 6481 gtacctgctc aatggaaacg gaggaggcgg aggaggagga gggacttccg ccgccagcaa 6541 gttgccacat ctcacggcca aaccggccac ggcgacgagc agcagcagcg gaggaggagg 6601 aggcagcaag tcggcaggca gcctgttcgc cctcaagcag cagcagcacc agcagaagct 6661 catcgagaat gccatcatgt cgaagatacc caagagtctg accgtgatac cacagcagat 6721 gggcagcaat gcaggtggcg agatgggcgg cggcggcagt cctccggcaa ggactgatga 6781 cggcggagga ggccgtggcc aggaggagca gcggtggcca cccggcggag cagcaggctc 6841 aacaagaggt gacatggata tcacaaactc cacaattcca tggctgcact agaataagtg 6901 atacactaaa aaaaacagaa cagaacagac ggacagagag atgagaaacc aagataattg 6961 taaggattac ataacgttgt ttgtgtataa acgagatacg gttacgaata cgactacact 7021 ataagtaaac cccactagtt aggcccgtga gccgaaacca cagatgcatg aaatgatgga 7081 acagatggag atgattaagt tcagatacag ataccgatgc cgatgcgaat gcgaataagg 7141 atacggatat ggatagttag agataccgat acaccctact ctaaactatg ctactctatt 7201 atcgtagact taaactatat ttttttaatt agatgtacgg gcatattaac ttgcgattcg 7261 tgtattatag ataccaaaat tgctagagct aaacggttta tagatttata agcgacccca 7321 aatcacacac acacaaacac tcctcctgct acaccaacac actcacacac actctacttt 7381 aagagagaat gcagcacaaa cagaaattgt ggccaggaag atataccaac ctcaggctgc 7441 tgctgatccc aggaccggaa actgaatccc ggatcccgaa gccccagttt ttttttgcat 7501 aagccccaca agtcaccagc ccaggagcat tttcagcaca cttcacaatc caatcccgca 7561 catagaatac gattcgtttg atgtagcctc ctaatttata accattttgt atttccattt 7621 atacatcaac tcgctacaga tacaaataga gaaacagaaa ccgaaacaga tatattaact 7681 cttaaactgt aaatatttcg atggaaagaa cagataaata caaaaactat aatacaaaaa 7741 atacaaacta aaatgctaat ttaaaaagtg gcctctgttc cattccaagg aattctaaaa 7801 cccagatcgt tggtagtgag gggcaattaa tttgcaaatt tcaaatgaca aattgaaaag 7861 ctttctccac aaaaatatac caataaaaat atacttaaca cccagcata