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LOCUS XM_017140749 3761 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_017140749 VERSION XM_017140749.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140749.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3761 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3761 /gene="Actn" /note="alpha actinin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056774" CDS 199..2952 /gene="Actn" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_016996238.1" /db_xref="GeneID:108056774" /translation="MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWC NSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF IASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRK TAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKY LDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPN NYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGV QKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNS WKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQC KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQW DRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTM EEIQGLIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTAND MTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIG MGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRV GWEQLLTSINRNINEVENQILTRDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKS CLVSLGYSIGKDRQGDLDFQRILAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVID SFRILAADKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGE TDL" misc_feature 289..603 /gene="Actn" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(304..306,316..318,448..450,460..468,475..480, 523..549,571..573,577..582,589..594,598..603) /gene="Actn" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(349..351,355..357,427..435) /gene="Actn" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 613..954 /gene="Actn" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(643..645,655..657,796..804,811..816,859..885, 916..918,922..927,934..939,943..948) /gene="Actn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1102..1773 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1456..2139 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1456..1473 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1771..1788 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1810..2478 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2134..2151 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2521..2724 /gene="Actn" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(2548..2550,2554..2556,2560..2562,2581..2583, 2671..2673,2677..2679,2683..2685,2704..2706) /gene="Actn" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 2737..2937 /gene="Actn" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3761 /gene="Actn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctggcgcgac atcagttttg agttggctat caacgcgagc gggtctttct cttcgcaagc 61 gacacaccag caactggatc accagcaaca acagcagcac caccaccaga agcagcgaga 121 gcgagagaga gtgcagcggg acagggaacg agctagatat atacaacgag cgagcgggac 181 ttctgagagc gccacaagat gatgatggag aacggactct ccatggagta cggagatggg 241 tacatggagc aggaggagga gtgggagcgc gagggccttc tcgaccctgc gtgggagaag 301 caacagaaga agacatttac cgcctggtgt aacagtcatc tgcgcaaagc cggcaccgcc 361 atcgacaaca tcgaggagga cttccgcaac ggcctcaagc tgatgctgct gctggaggtg 421 atctccggcg agacgctgcc caagcccgat cgcggcaaga tgcgcttcca caagatcgcc 481 aacgtgaaca aggctctcga cttcatcgcc tccaagggcg tccacctggt gtccattggc 541 gccgaggaga tcgtcgatgg caacctgaag atgaccctgg gcatgatctg gacgatcatc 601 ctgcgcttcg ccatccagga catctccgtg gaggagatga ccgccaagga gggtctgctg 661 ctgtggtgcc agcgcaagac ggctccttac aagaacgtca acgtacagaa cttccatctg 721 tcgttcaagg atggtctggc cttctgcgcc ctcatccatc gccatcgtcc agatcttatc 781 gactacgcca agctgtccaa agacaatcct ctggagaatc ttaacactgc cttcgatgtg 841 gccgagaagt atctggatat tccgcgcatg ttggatccag atgatttgat caacactccg 901 aaaccggatg aacgtgccat catgacgtac gtctcctgct actaccacgc cttccaggga 961 gcccaacagg ttggaaatgt gacgcatgta cccgaaccca caagacaata cacctacgtc 1021 ccgaataatt acaatgcgga aaccgctgcc aaccgcatct gcaaggtgct caaggtcaac 1081 caggagaacg agcgcctcat ggaggagtac gagcgtctgg ccagtgattt gctggagtgg 1141 atccgccgca ccatgccgtg gctgaactcc cgccaggcgg acaactcgct ggcgggcgtg 1201 cagaagaagc tggaggagta ccgcacctac cggcgcaagc acaagccgcc acgcgtcgag 1261 cagaaggcca agctggagac gaacttcaac acgctgcaga ccaagctgcg cctgtccaac 1321 cggcccgcct acctgcccac cgagggcaag accgtctcgg acatctccaa ctcgtggaag 1381 ggcctcgagc tggccgagaa ggccttcgag gagtggctgc tcgccgagac catgcgcctg 1441 gagcgcctcg agcatctggc ccagaagttc aagcacaagg ccgatgccca cgaggactgg 1501 acgcgcggca aggaggagat gctgcagtcg caggacttcc gccagtgcaa gctcaacgag 1561 ctgaaggccc tcaagaagaa gcacgaagcc tttgagtctg acctggccgc ccaccaggat 1621 cgcgtcgagc agatcgccgc catcgcccag gagctgaaca ccctggagta ccatgactgc 1681 gtgtcggtga acgccaggtg ccagcgcatc tgcgaccagt gggaccgcct gggcgccctc 1741 acccagcgca ggcgcaccgc tttggacgag gccgagcgca ttctggagaa gatcgacatc 1801 ttgcatttgg agttcgcgaa gcgggcggcg ccgttcaaca actggctgga cgggacgcgc 1861 gaggatctgg tcgacatgtt catcgtgcac accatggagg agatccaggg cctgatccag 1921 gcgcacgacc agttcaaggc gacgctgggc gaggccgaca aggagttcaa cctgatcgtg 1981 aacctggtcc gcgaggtgga gtcgattgtg aagcagcacc agatccccgg cggcctggag 2041 aacccctaca ccacgctgac cgccaacgat atgacgcgca agtggagcga cgtccgccag 2101 ctggtccctc agcgcgacca gacgctggcc aacgagctgc gcaagcagca gaacaacgag 2161 atgctgcgcc gccagttcgc cgagaaggcc aacattgtcg gcccctggat cgagcggcag 2221 atggacgcgg tgacggccat cggcatggga ctgcagggat cgctggagga ccagctgcac 2281 cggctcaagg agtacgagca ggccgtctat gcctacaagc cgaacatcga ggagctggag 2341 aagatccacc aggcggtgca ggagtcgatg atcttcgaga accgttacac caactacacg 2401 atggagacgc tgcgcgtcgg ctgggagcag ctgctcacct cgatcaaccg caacatcaac 2461 gaggtggaga accagatcct cacccgcgac tccaagggca ttagccagga gcagctgaac 2521 gagttccgca gcagcttcaa tcacttcgac aagaaccgca ccggccgcct gtcgcccgag 2581 gagttcaagt cgtgcctcgt ctcgctgggc tactcgatcg gcaaggatcg ccagggcgac 2641 ctcgacttcc agcgcatcct cgcggtcgtc gatccgaaca acactggcta cgtgcacttc 2701 gacgccttcc tcgacttcat gacccgcgag agcaccgata ccgacactgc cgaacaagtg 2761 atcgactcgt tccgaatcct ggcagccgat aagccataca ttttgcccga cgaactgcgc 2821 cgcgagttgc ccccagacca ggccgagtac tgcatccagc gcatgccgcc ctacaaggga 2881 cccaacggag tgcccggcgc cctggactac atgtccttca gcacagctct ctacggcgag 2941 accgacttgt aggagcacct gggcctgggc atcgaggcac cacccggatc cgagcagagc 3001 cagatcatat aataatgata acctttaata ataataatat taataaacat agatttatta 3061 tacctacact cgtaacggta gctgcagaag aacttcagag catcatgtga ggatgaatat 3121 atttattaat ttccgtctcg agccgatgta tgcgacccac acatacaaca tacaacaaaa 3181 aacaaaagtg aaaaacaaga aattatgaaa tgaaacacac acgtacatca aatacatttg 3241 taaaacagca aggcaaccat caagtgcata tcgaatattt aaatctaatt ctaaacacca 3301 agtccaaaac aaaacaaaca aacaaaaaca tcaacaaaac gctaaaaaca ttattttttg 3361 aaatttatgt taataaaaac aaaatccata cataaaaacc aaaaacaaat gaaatcgcca 3421 aatccgaaag agattacttt ctttgaaata aaaacataaa tactgagggg gagggagata 3481 gccaaacaaa gtggcgaaac ttgagactac ttccgcttcc gtttacgaac cttcaagaac 3541 cagatagaca gagacggcaa tactgctaga gacagagaga gatagagaga gaccactaca 3601 cgaaagaaag agttctgttc tatattcaca caattactat agctatttat tcatcgacaa 3661 tttcagaaca ttagctttcg cttatctcga atatattcac attttcagaa cattttacac 3721 aactcagata acgaatgatg aataaagcga tttcttggtg a