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LOCUS XM_017140742 5744 bp mRNA linear INV 09-DEC-2024 (if), transcript variant X1, mRNA. ACCESSION XM_017140742 VERSION XM_017140742.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140742.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5744 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5744 /gene="if" /note="integrin subunit alpha inflated; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056767" CDS 296..4420 /gene="if" /codon_start=1 /product="integrin alpha-PS2 isoform X1" /protein_id="XP_016996231.2" /db_xref="GeneID:108056767" /translation="MSGDQGHRRRMGGPPLIMILILLAIALTTDGYNIDLPSYIRFRQ SPNSMFGFSIAMHKSRNGFYSNQNNVSLIVGAPKFDTSRYQQGVSEAGGVFKCSLNDD DCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATSRDSDLVVACAPRYVFHTMTPSK AFRIDPVGTCFTSHNFEQFHEVSPCRTNNWGYHRQGSCQAGFSAAINGNGSRLFIGAP GSWYWQGQTYSIPPDAEFPFKPPLYQPFGTGGMASSHDVTRPENQVFSTSESASVNDD SYLGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRIVVNRWNMANIFNITGRQIGEYFGY ALATSDVDGDGLDDLIIGAPMYTDPDNVEGKYDVGRVYILLQGGPSEEKRWTTEHIRD GWHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPLGPLAKPSQV IKAEQIVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAE TSFASNSKLISLDDRSCQLVRDRKKVPCMLLATCWSYTGRYLPQQLDFDVSWLLDAKK LPNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNLRS SRPLDPLVRQRRSILEPVIDQNREIVLRDAINIQKNCGPDNICEPDLKLVVNTVDKYL FGSPEPLVIEVLISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPEN NHTLKCDIGNPLESGKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEKPGSDYDNKI RQSVGIWVDTDLDIKGTSLPDYQLYKADDYKMLGNASKEDEIGPQVVHIYEIRNNRPS IIEEAEVKIHLPYETINGDALMYLLNQPETGGKITCDEVAVNEYNLQLDEKLQRKSYL QAQGAISNSAEAAGQSSSSSSSSSSWTSESGGHVEKAQGNGYVQGVIVSNTTDAGNKL TPKQVQDRLAEDKLESIGDASIVHRDRASQALVQEPRMNQTSYASFSASSSSSGGSPL GHSTQGHIQMARPVVQQQGSSSSSSNYRTWPNQQQQQILLAGSGGLGSPVSFGDKSQF GGRQGNFHAAGFDLGTLNPSQSQSQGQFQTSSQGHYQGQNQAQFQAPRNPVQTSYQSQ TQYSGGAAPGGYQTTHHVTYSSGGKPYYGRENEDYYDEDNLQQAAPNGAQWSSSSSSS SSRRLRRSPQEDQEEQQPRQIDLNSPCKSAKCKTIRCVVTNLGTEDGDAAFVAIRARM VAKTMEKLASNVPLNVSTLAVANVILLPFIGAPKDAIVKTHEIFYKAEPEPLQVPDVV PLWVVVLAACAGALIFLLLVWLLYKCGFFNRNRPTDHSQERQPLRNGYHGDEHL" misc_feature 431..625 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1118..>1243 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1487..1648 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1691..>1786 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1793..3034 /gene="if" /note="Integrin alpha; Region: Integrin_alpha2; pfam08441" /db_xref="CDD:462478" misc_feature 4328..4372 /gene="if" /note="Integrin alpha cytoplasmic region; Region: Integrin_alpha; pfam00357" /db_xref="CDD:459778" polyA_site 5744 /gene="if" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cactcactgc attcggtcgc gtgaagcggt tcttggctga tgtgaagtgc ggagcgctcg 61 cgatcgaaac ggaaattcga agggcgccag attcgattca aaactataga tagaaaattt 121 cgaaaaaatt caaattcgcg tatgcaaatc caatcgatgc tgtgaagatg caggcgtaaa 181 agtgcaaagt tcttggatgc aaacccaacg aaatcgatta gaaagaaagt agaaattcag 241 aaaaagaaag aactcagcga aaaaaaaaga aaagaaagaa agtctcgata gaaagatgag 301 tggagaccaa ggtcaccgaa gaagaatggg gggtccaccc ctgataatga tcctgatcct 361 gttggcgatc gcactaacca ccgatggcta taacatcgat ctgcccagct acattcgatt 421 ccggcagtcg cccaactcga tgttcggctt tagcattgcg atgcacaagt ctcgaaatgg 481 attctacagc aatcagaaca atgtcagttt gatcgttgga gctcccaaat tcgacacatc 541 ccgttatcag cagggcgtgt cggaggccgg cggtgttttc aaatgcagcc tgaacgatga 601 cgactgcaaa ttggtgccat tcgactccaa aggcaacaat cggaatgtcg acaaggaggt 661 ggtggacagg aaatcctatc aatggttggg cgccacggtg gccacttcgc gagacagtga 721 cttagttgtg gcctgcgcac cgcgctatgt gttccacacg atgacgccat cgaaggcgtt 781 ccgcattgat cccgtgggca cctgcttcac ctcgcacaac ttcgagcagt tccacgaggt 841 ctccccctgc cggaccaaca actggggtta tcatcgccag ggctcgtgtc aggctggatt 901 tagtgcagcg atcaacggga atggatcgcg cttgttcatt ggcgcacctg gcagttggta 961 ctggcaagga caaacctact cgataccgcc cgatgccgag tttccattta agccgcctct 1021 ttatcagccc ttcggcactg gaggtatggc cagttcccac gacgtgaccc ggcccgagaa 1081 ccaggtcttc tccacctccg agagcgcctc ggtgaatgac gactcctact tgggctactc 1141 gatggtcacc ggtgactttg acggcgatcg cagcgaggat gtggccattg gcatgccgcg 1201 tggcggcaat ctcgtcggca ggatcgtggt gaatcgttgg aacatggcga acatcttcaa 1261 tatcaccggt cgccaaatag gcgagtactt tggctacgcg ctggcgacga gcgacgtgga 1321 tggcgacggg ctggacgatc tgatcatcgg ggcgccgatg tacacggatc ccgacaatgt 1381 ggagggcaag tacgacgtgg gccgcgtcta catcctgctg cagggcggcc ccagcgagga 1441 gaagcgctgg acgacggagc acatccggga tggctggcac agcaagggaa gattcggcct 1501 ggccctgacc accctgggcg acgtgaacgg cgatggctac ggggactttg cagtgggcgc 1561 tccctacgac ggacccgagg gtcgcggcgt ggtctacatc ttccatggat cgccactcgg 1621 accgctggcc aagccgtcgc aggtgatcaa ggcggagcag attgtcgagg gagccccgta 1681 tccgcgcacc tttggcttcg ccctgtccgg tggcctcgac atggacggca acacctatcc 1741 ggatctcgcc gtgggcgcct actcctccga ccaggtcttc atcttcaagt cgcggcccgt 1801 ggccgctgtg aatgcggaga ccagcttcgc ctcgaactcc aagctgatca gcctggacga 1861 tcgcagttgc cagctggtga gggacaggaa gaaggtgccc tgcatgctgc tggccacctg 1921 ctggagctac acgggccgct atctgcccca gcagctggac ttcgatgtct cctggctgct 1981 ggacgccaag aagctgccca atccgcgcat gttcttcctg cgcgacgagg gcaagaatat 2041 caggaaccag accattcgcc tcaactatgg ccagaagtac tgtctgaacg agaccgtgta 2101 tctgctggac aaggtgcagg acaagctgac gccgctggag gtggaggcgc gctacaatct 2161 gcgcagcagt cgccccctgg atcctttggt ccgccagagg cggagcatcc tggagccggt 2221 gatcgatcag aatcgcgaga tcgtcctcag ggatgccatc aacattcaga agaactgtgg 2281 acccgataac atctgcgagc cggatctcaa gctggtggtc aacaccgtgg acaagtatct 2341 gtttggctcg cccgagcccc tggtcatcga ggtgctcatc tcgaacacca acgaggatgc 2401 ctttgaggcc gccttctata tggtcacccc gccggatctg cagttcagga agctgcagca 2461 gctgggcgag aagaaggaca cgcccatcac ctgctcgccg cccacgcccg aaaataatca 2521 cacgctgaag tgcgacatcg gaaatcccct ggagtcgggc aagattgccc acttcaagat 2581 cagcttggtg cccgaggaga agtacggcag ctcgtccagt tacgacttct attgggaggc 2641 caactcgacg aatctggaga agccgggctc cgattacgac aacaagatcc gccagagcgt 2701 cggcatctgg gtggacaccg atctggacat caagggcacc tcgctgcccg actaccagct 2761 gtacaaggcc gacgactaca agatgctggg gaatgcctcc aaggaggacg agatcgggcc 2821 gcaggtggtg cacatctacg agatccgcaa caatcgcccc tcgatcatcg aggaggcgga 2881 ggtgaagatc catctgccct acgagacgat caacggcgat gcgctgatgt atctgctcaa 2941 tcagccggag accggtggca agatcacctg cgacgaggtg gccgtcaacg agtacaatct 3001 gcagctggac gagaagctgc agcgcaagtc gtatctgcag gcgcagggtg ccatttcgaa 3061 ttccgccgag gccgcaggcc aatcatcctc ctcctcctcg agctcctcca gctggacctc 3121 cgagtcgggt ggccatgtgg agaaggccca gggcaatggc tacgtgcagg gcgttatagt 3181 tagcaacacg acggatgcgg gcaacaagct gacgcccaaa caggtccagg atcgtttggc 3241 cgaggataag ctggagtcga tcggagatgc ctccatcgtg caccgcgatc gcgccagtca 3301 ggctctcgtc caggagcccc ggatgaacca gaccagctat gccagtttct ccgcgagcag 3361 ctcctcgtct ggtggatctc ccttgggtca cagcacccag ggtcacatac aaatggcccg 3421 gccagtggtt cagcagcagg gcagctcctc ctcctcctcc aactaccgca cttggccaaa 3481 ccaacagcag cagcagatcc ttctggctgg ctccggagga ttgggttccc ccgttagctt 3541 cggcgacaag tcacagttcg gcggtcggca gggcaacttc cacgccgccg gcttcgatct 3601 gggcaccctg aatcctagcc agagccagag ccagggtcag ttccagacgt ccagccaggg 3661 ccactaccag ggccagaatc aggcccagtt ccaggcgccc aggaatcccg tgcagacctc 3721 ctaccagagc caaacgcagt acagtggagg agccgctccc ggcggctatc agaccaccca 3781 ccatgtgacc tactcgtcgg gcggcaagcc ctactatggc cgagagaacg aggactacta 3841 cgacgaggac aacctgcagc aggcagcgcc caatggagct caatggagca gcagcagcag 3901 cagcagcagc tcgcgtcgtt tgcggcgatc cccgcaggag gatcaggagg agcagcagcc 3961 gcgccagatc gatttgaatt cgccctgcaa gtcggccaaa tgcaagacca tccggtgtgt 4021 ggtcaccaat ctgggcaccg aggacggcga tgccgccttc gtggccatcc gggcgcgcat 4081 ggtggccaaa acgatggaga agctggcctc gaacgtaccg ctcaatgtgt ccacgctggc 4141 ggtggccaat gtcatcctgc tgcccttcat cggagcgccc aaggacgcga ttgtgaagac 4201 gcacgagatc ttctacaagg cggagccgga gccgctccag gtgcccgatg tggtgcccct 4261 gtgggtcgtc gtcctggccg cctgcgccgg agcgctcatc ttcctgctgc tcgtctggct 4321 gctctacaag tgcggcttct ttaatcgcaa ccggccgacg gatcactcgc aggagcggca 4381 gccacttcgg aacggatacc acggcgacga gcatctgtag ggacatccgc gaggtcctcc 4441 aaaatagcaa gagaattaac aaaagccacg aaatacttct aacatcgcac taaaccaaac 4501 caaaatgtac taaaaacaac gaacaacggc tctaagacgt actaaaatcg agcgcttagt 4561 tgagtttaca aaaaaatgcg atgtcgacgg gattggaatc ccgaatagat cacttttgag 4621 ggataagcct gctgcttgga agatacgaaa aaaaacaaaa aaaaacaaca tttaaacttg 4681 cctagtcacg acatgaagaa ctttctaatg cgtaaaggtt ttataacttt taacagaaca 4741 ctttattttt tttatttttt agacttttgt gtttttgttt cattgcaaaa atttcgagga 4801 aagttaaata agtgctatat taatctgtac taaagaaagc aaggaaggaa agaaagaaag 4861 caagtcgaag ggagcctagg ctaagtgaat gaatgactga aaatgaacta tatgacgact 4921 gaatgaatga gctggtgaat gagcgaatgt gagtgatagc caatatggaa atatcgaagt 4981 tataagttcg agaatcgata atcgagaaac tggggatagt gttgagcaaa gtgctgccct 5041 atatactgcc acgccccaaa aaaaaatttg ggcagcagcc gaggcatgga aattaataca 5101 gagaaaatcc acacttatta ggtgctactc taatcttttt tttttttaaa tctattatca 5161 cgtctcttcg gaatacttgg cgttttccca gcgcggaaac ccaattcttt ttctgtggac 5221 tattgtttgg acaaactcaa agtttgcctg ttggaggaaa agttacaacg ccaaaatgtg 5281 ttgaaaaatg caaaagaaat tattaaaaac atattgatta atctatgtaa ttcttgaatg 5341 taaactctgt gtaaatacta aaaatgaaaa acaaaaaaaa aaacaaaaaa cgaagaagcg 5401 aaagtaggag aacagttgat ttgttatatt taaattaata ttgcatttat ttcctaatta 5461 cagtgggaga agcgctgacc gacttcttgc agtgtactct cgaaataaac gatccctgtc 5521 tgtatcactt aaaaccccct actaaaatgt agtctcgccc gctgctcaca gctagtttag 5581 ttgaattata cgctactgat taatttatta actgtactta ttaatgcgtg tcatgaataa 5641 tgattgattg ccccccttat ttgtttgcta atttctgtat tacatttaat gatttaccat 5701 aaaaatacaa ataaaaatga cggtcgagtt gtaaaaataa aaaa