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LOCUS XM_017140741 5930 bp mRNA linear INV 09-DEC-2024 (if), transcript variant X2, mRNA. ACCESSION XM_017140741 VERSION XM_017140741.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140741.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5930 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5930 /gene="if" /note="integrin subunit alpha inflated; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056767" CDS 482..4606 /gene="if" /codon_start=1 /product="integrin alpha-PS2 isoform X1" /protein_id="XP_016996230.2" /db_xref="GeneID:108056767" /translation="MSGDQGHRRRMGGPPLIMILILLAIALTTDGYNIDLPSYIRFRQ SPNSMFGFSIAMHKSRNGFYSNQNNVSLIVGAPKFDTSRYQQGVSEAGGVFKCSLNDD DCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATSRDSDLVVACAPRYVFHTMTPSK AFRIDPVGTCFTSHNFEQFHEVSPCRTNNWGYHRQGSCQAGFSAAINGNGSRLFIGAP GSWYWQGQTYSIPPDAEFPFKPPLYQPFGTGGMASSHDVTRPENQVFSTSESASVNDD SYLGYSMVTGDFDGDRSEDVAIGMPRGGNLVGRIVVNRWNMANIFNITGRQIGEYFGY ALATSDVDGDGLDDLIIGAPMYTDPDNVEGKYDVGRVYILLQGGPSEEKRWTTEHIRD GWHSKGRFGLALTTLGDVNGDGYGDFAVGAPYDGPEGRGVVYIFHGSPLGPLAKPSQV IKAEQIVEGAPYPRTFGFALSGGLDMDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAE TSFASNSKLISLDDRSCQLVRDRKKVPCMLLATCWSYTGRYLPQQLDFDVSWLLDAKK LPNPRMFFLRDEGKNIRNQTIRLNYGQKYCLNETVYLLDKVQDKLTPLEVEARYNLRS SRPLDPLVRQRRSILEPVIDQNREIVLRDAINIQKNCGPDNICEPDLKLVVNTVDKYL FGSPEPLVIEVLISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPEN NHTLKCDIGNPLESGKIAHFKISLVPEEKYGSSSSYDFYWEANSTNLEKPGSDYDNKI RQSVGIWVDTDLDIKGTSLPDYQLYKADDYKMLGNASKEDEIGPQVVHIYEIRNNRPS IIEEAEVKIHLPYETINGDALMYLLNQPETGGKITCDEVAVNEYNLQLDEKLQRKSYL QAQGAISNSAEAAGQSSSSSSSSSSWTSESGGHVEKAQGNGYVQGVIVSNTTDAGNKL TPKQVQDRLAEDKLESIGDASIVHRDRASQALVQEPRMNQTSYASFSASSSSSGGSPL GHSTQGHIQMARPVVQQQGSSSSSSNYRTWPNQQQQQILLAGSGGLGSPVSFGDKSQF GGRQGNFHAAGFDLGTLNPSQSQSQGQFQTSSQGHYQGQNQAQFQAPRNPVQTSYQSQ TQYSGGAAPGGYQTTHHVTYSSGGKPYYGRENEDYYDEDNLQQAAPNGAQWSSSSSSS SSRRLRRSPQEDQEEQQPRQIDLNSPCKSAKCKTIRCVVTNLGTEDGDAAFVAIRARM VAKTMEKLASNVPLNVSTLAVANVILLPFIGAPKDAIVKTHEIFYKAEPEPLQVPDVV PLWVVVLAACAGALIFLLLVWLLYKCGFFNRNRPTDHSQERQPLRNGYHGDEHL" misc_feature 617..811 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1304..>1429 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1673..1834 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1877..>1972 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1979..3220 /gene="if" /note="Integrin alpha; Region: Integrin_alpha2; pfam08441" /db_xref="CDD:462478" misc_feature 4514..4558 /gene="if" /note="Integrin alpha cytoplasmic region; Region: Integrin_alpha; pfam00357" /db_xref="CDD:459778" polyA_site 5930 /gene="if" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tataagccaa ccaaaatgac acatcaaatg gtcgaaactt ttgctaacgg aaattacagt 61 cttcccacac gcaactcacc tttgaacata ttttttttcg agtgggatgc tcgcacatag 121 ataatgaaaa actaaacttt tgctatcatt ttggttgtta gagagctttg aggttgtttt 181 tgctgctctc ccgagactac agactacaga ctctatagag tctccaatga gtaggcgatc 241 gggcacgagc agttcaccta tgtatctatc gctgcgctgc gatgtatttt acagatattt 301 tgcgccatta gtagtggttt aaatcttgct gcgatcgctg tcgagctgtg aagatgcagg 361 cgtaaaagtg caaagttctt ggatgcaaac ccaacgaaat cgattagaaa gaaagtagaa 421 attcagaaaa agaaagaact cagcgaaaaa aaaagaaaag aaagaaagtc tcgatagaaa 481 gatgagtgga gaccaaggtc accgaagaag aatggggggt ccacccctga taatgatcct 541 gatcctgttg gcgatcgcac taaccaccga tggctataac atcgatctgc ccagctacat 601 tcgattccgg cagtcgccca actcgatgtt cggctttagc attgcgatgc acaagtctcg 661 aaatggattc tacagcaatc agaacaatgt cagtttgatc gttggagctc ccaaattcga 721 cacatcccgt tatcagcagg gcgtgtcgga ggccggcggt gttttcaaat gcagcctgaa 781 cgatgacgac tgcaaattgg tgccattcga ctccaaaggc aacaatcgga atgtcgacaa 841 ggaggtggtg gacaggaaat cctatcaatg gttgggcgcc acggtggcca cttcgcgaga 901 cagtgactta gttgtggcct gcgcaccgcg ctatgtgttc cacacgatga cgccatcgaa 961 ggcgttccgc attgatcccg tgggcacctg cttcacctcg cacaacttcg agcagttcca 1021 cgaggtctcc ccctgccgga ccaacaactg gggttatcat cgccagggct cgtgtcaggc 1081 tggatttagt gcagcgatca acgggaatgg atcgcgcttg ttcattggcg cacctggcag 1141 ttggtactgg caaggacaaa cctactcgat accgcccgat gccgagtttc catttaagcc 1201 gcctctttat cagcccttcg gcactggagg tatggccagt tcccacgacg tgacccggcc 1261 cgagaaccag gtcttctcca cctccgagag cgcctcggtg aatgacgact cctacttggg 1321 ctactcgatg gtcaccggtg actttgacgg cgatcgcagc gaggatgtgg ccattggcat 1381 gccgcgtggc ggcaatctcg tcggcaggat cgtggtgaat cgttggaaca tggcgaacat 1441 cttcaatatc accggtcgcc aaataggcga gtactttggc tacgcgctgg cgacgagcga 1501 cgtggatggc gacgggctgg acgatctgat catcggggcg ccgatgtaca cggatcccga 1561 caatgtggag ggcaagtacg acgtgggccg cgtctacatc ctgctgcagg gcggccccag 1621 cgaggagaag cgctggacga cggagcacat ccgggatggc tggcacagca agggaagatt 1681 cggcctggcc ctgaccaccc tgggcgacgt gaacggcgat ggctacgggg actttgcagt 1741 gggcgctccc tacgacggac ccgagggtcg cggcgtggtc tacatcttcc atggatcgcc 1801 actcggaccg ctggccaagc cgtcgcaggt gatcaaggcg gagcagattg tcgagggagc 1861 cccgtatccg cgcacctttg gcttcgccct gtccggtggc ctcgacatgg acggcaacac 1921 ctatccggat ctcgccgtgg gcgcctactc ctccgaccag gtcttcatct tcaagtcgcg 1981 gcccgtggcc gctgtgaatg cggagaccag cttcgcctcg aactccaagc tgatcagcct 2041 ggacgatcgc agttgccagc tggtgaggga caggaagaag gtgccctgca tgctgctggc 2101 cacctgctgg agctacacgg gccgctatct gccccagcag ctggacttcg atgtctcctg 2161 gctgctggac gccaagaagc tgcccaatcc gcgcatgttc ttcctgcgcg acgagggcaa 2221 gaatatcagg aaccagacca ttcgcctcaa ctatggccag aagtactgtc tgaacgagac 2281 cgtgtatctg ctggacaagg tgcaggacaa gctgacgccg ctggaggtgg aggcgcgcta 2341 caatctgcgc agcagtcgcc ccctggatcc tttggtccgc cagaggcgga gcatcctgga 2401 gccggtgatc gatcagaatc gcgagatcgt cctcagggat gccatcaaca ttcagaagaa 2461 ctgtggaccc gataacatct gcgagccgga tctcaagctg gtggtcaaca ccgtggacaa 2521 gtatctgttt ggctcgcccg agcccctggt catcgaggtg ctcatctcga acaccaacga 2581 ggatgccttt gaggccgcct tctatatggt caccccgccg gatctgcagt tcaggaagct 2641 gcagcagctg ggcgagaaga aggacacgcc catcacctgc tcgccgccca cgcccgaaaa 2701 taatcacacg ctgaagtgcg acatcggaaa tcccctggag tcgggcaaga ttgcccactt 2761 caagatcagc ttggtgcccg aggagaagta cggcagctcg tccagttacg acttctattg 2821 ggaggccaac tcgacgaatc tggagaagcc gggctccgat tacgacaaca agatccgcca 2881 gagcgtcggc atctgggtgg acaccgatct ggacatcaag ggcacctcgc tgcccgacta 2941 ccagctgtac aaggccgacg actacaagat gctggggaat gcctccaagg aggacgagat 3001 cgggccgcag gtggtgcaca tctacgagat ccgcaacaat cgcccctcga tcatcgagga 3061 ggcggaggtg aagatccatc tgccctacga gacgatcaac ggcgatgcgc tgatgtatct 3121 gctcaatcag ccggagaccg gtggcaagat cacctgcgac gaggtggccg tcaacgagta 3181 caatctgcag ctggacgaga agctgcagcg caagtcgtat ctgcaggcgc agggtgccat 3241 ttcgaattcc gccgaggccg caggccaatc atcctcctcc tcctcgagct cctccagctg 3301 gacctccgag tcgggtggcc atgtggagaa ggcccagggc aatggctacg tgcagggcgt 3361 tatagttagc aacacgacgg atgcgggcaa caagctgacg cccaaacagg tccaggatcg 3421 tttggccgag gataagctgg agtcgatcgg agatgcctcc atcgtgcacc gcgatcgcgc 3481 cagtcaggct ctcgtccagg agccccggat gaaccagacc agctatgcca gtttctccgc 3541 gagcagctcc tcgtctggtg gatctccctt gggtcacagc acccagggtc acatacaaat 3601 ggcccggcca gtggttcagc agcagggcag ctcctcctcc tcctccaact accgcacttg 3661 gccaaaccaa cagcagcagc agatccttct ggctggctcc ggaggattgg gttcccccgt 3721 tagcttcggc gacaagtcac agttcggcgg tcggcagggc aacttccacg ccgccggctt 3781 cgatctgggc accctgaatc ctagccagag ccagagccag ggtcagttcc agacgtccag 3841 ccagggccac taccagggcc agaatcaggc ccagttccag gcgcccagga atcccgtgca 3901 gacctcctac cagagccaaa cgcagtacag tggaggagcc gctcccggcg gctatcagac 3961 cacccaccat gtgacctact cgtcgggcgg caagccctac tatggccgag agaacgagga 4021 ctactacgac gaggacaacc tgcagcaggc agcgcccaat ggagctcaat ggagcagcag 4081 cagcagcagc agcagctcgc gtcgtttgcg gcgatccccg caggaggatc aggaggagca 4141 gcagccgcgc cagatcgatt tgaattcgcc ctgcaagtcg gccaaatgca agaccatccg 4201 gtgtgtggtc accaatctgg gcaccgagga cggcgatgcc gccttcgtgg ccatccgggc 4261 gcgcatggtg gccaaaacga tggagaagct ggcctcgaac gtaccgctca atgtgtccac 4321 gctggcggtg gccaatgtca tcctgctgcc cttcatcgga gcgcccaagg acgcgattgt 4381 gaagacgcac gagatcttct acaaggcgga gccggagccg ctccaggtgc ccgatgtggt 4441 gcccctgtgg gtcgtcgtcc tggccgcctg cgccggagcg ctcatcttcc tgctgctcgt 4501 ctggctgctc tacaagtgcg gcttctttaa tcgcaaccgg ccgacggatc actcgcagga 4561 gcggcagcca cttcggaacg gataccacgg cgacgagcat ctgtagggac atccgcgagg 4621 tcctccaaaa tagcaagaga attaacaaaa gccacgaaat acttctaaca tcgcactaaa 4681 ccaaaccaaa atgtactaaa aacaacgaac aacggctcta agacgtacta aaatcgagcg 4741 cttagttgag tttacaaaaa aatgcgatgt cgacgggatt ggaatcccga atagatcact 4801 tttgagggat aagcctgctg cttggaagat acgaaaaaaa acaaaaaaaa acaacattta 4861 aacttgccta gtcacgacat gaagaacttt ctaatgcgta aaggttttat aacttttaac 4921 agaacacttt atttttttta ttttttagac ttttgtgttt ttgtttcatt gcaaaaattt 4981 cgaggaaagt taaataagtg ctatattaat ctgtactaaa gaaagcaagg aaggaaagaa 5041 agaaagcaag tcgaagggag cctaggctaa gtgaatgaat gactgaaaat gaactatatg 5101 acgactgaat gaatgagctg gtgaatgagc gaatgtgagt gatagccaat atggaaatat 5161 cgaagttata agttcgagaa tcgataatcg agaaactggg gatagtgttg agcaaagtgc 5221 tgccctatat actgccacgc cccaaaaaaa aatttgggca gcagccgagg catggaaatt 5281 aatacagaga aaatccacac ttattaggtg ctactctaat cttttttttt tttaaatcta 5341 ttatcacgtc tcttcggaat acttggcgtt ttcccagcgc ggaaacccaa ttctttttct 5401 gtggactatt gtttggacaa actcaaagtt tgcctgttgg aggaaaagtt acaacgccaa 5461 aatgtgttga aaaatgcaaa agaaattatt aaaaacatat tgattaatct atgtaattct 5521 tgaatgtaaa ctctgtgtaa atactaaaaa tgaaaaacaa aaaaaaaaac aaaaaacgaa 5581 gaagcgaaag taggagaaca gttgatttgt tatatttaaa ttaatattgc atttatttcc 5641 taattacagt gggagaagcg ctgaccgact tcttgcagtg tactctcgaa ataaacgatc 5701 cctgtctgta tcacttaaaa ccccctacta aaatgtagtc tcgcccgctg ctcacagcta 5761 gtttagttga attatacgct actgattaat ttattaactg tacttattaa tgcgtgtcat 5821 gaataatgat tgattgcccc ccttatttgt ttgctaattt ctgtattaca tttaatgatt 5881 taccataaaa atacaaataa aaatgacggt cgagttgtaa aaataaaaaa