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LOCUS XM_017140730 2390 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017140730 VERSION XM_017140730.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140730.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2390 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2390 /gene="run" /note="segmentation protein runt; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056758" CDS 210..1742 /gene="run" /codon_start=1 /product="segmentation protein Runt isoform X2" /protein_id="XP_016996219.2" /db_xref="GeneID:108056758" /translation="MHLPAGPTMVANNTQVLAAAAAAAAAAAAVAQAQVPQSGSSSGS QNNLANTSTHSASSTGSSTPDLSTNNNNTSTSSSNPPNSAKMPSSMTDMFASLHEMLQ EYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGNDENYC GELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQIASYSKAIKVTVDG PREPRSYGYPHPGAFNPFMLNPAWLDAAYMTYGYADYFRHQAAAQAQAQVHHPALAKS SASSVSPNPSNPSVVVPTSSSSSSAAAVQSADYPHPGAPAVGQPGAMMPSPPGPGALP HAMPQFPFNHVAAAAAAKAVGGTPHAFHPYNFASAAVGLRARNAALHHQQQQHLQQDG APIVHVSPASSRPSSSSPQQQQQHVLLKLNTSIETSSIHEQSASDGDSDDEQIDVVKS EFDLDKSLDVTPLRMRCDLKAPSALKPLYHETSSGLQSSPETTTKIKSAAVQQKTVWR PY" misc_feature 498..881 /gene="run" /note="Runt domain; Region: Runt; pfam00853" /db_xref="CDD:459963" ORIGIN 1 ttagcgtgtc gagaacgcac atagcaatcg aaaaaccgta tatcgaaaat tcgagttcga 61 aaatttgaaa aaagcattcg acatcgaaaa tcgcgaaatc aattttttct aagtgattac 121 cagaaaaaca aaaaaaaaca gagaaaaaag tgaagtgaaa aatacacaga gaaaaaccaa 181 aggattactc tctctttcgg atacgaaaca tgcatctgcc agcgggtcca acgatggtgg 241 ccaataacac acaggtcctg gcagccgccg ccgccgctgc cgccgccgca gccgccgtgg 301 cccaagcaca ggtgccccaa agtggcagca gctcgggatc ccagaacaac ctggccaaca 361 ccagcaccca ttcggccagc agcacgggca gctcgacgcc cgatctcagc acgaacaaca 421 ataacactag caccagtagc agcaatcccc cgaactccgc caagatgccc tcctcgatga 481 ccgacatgtt cgcctcgctg cacgaaatgc tccaggaata ccacggcgaa ctggcccaga 541 cgggctcccc ctcgatcctg tgcagcgccc tgcccaatca ctggcgatcg aacaaatccc 601 tgcccggcgc cttcaaggtg atcgccttgg acgatgtccc cgatggcact ttggtctcga 661 tcaagtgcgg caacgatgag aactactgcg gggagctgag gaactgcacc accacgatga 721 agaaccaggt ggccaagttc aacgatctgc gcttcgtggg aaggagcggt cgcggaaagt 781 ccttcacgct gaccatcacc atcgccacat atccggtgca gatcgccagc tacagcaagg 841 ccatcaaggt gaccgtcgac gggccgcggg agccaagaag ctatggctat ccccatcccg 901 gcgccttcaa ccccttcatg ctgaaccccg cctggttgga cgcggcgtac atgacctacg 961 gctatgcgga ctacttccgc caccaggcgg cggcccaggc tcaggcccag gttcatcatc 1021 ctgccctggc caagtcctca gcctcctcgg tgtccccgaa tccttcgaat ccctcggtgg 1081 tggtgcccac cagcagctcc tcctcctccg cggcggcagt tcagtccgcg gactatccac 1141 atcccggagc gccggcagtg ggtcaaccgg gcgccatgat gccctcgcca ccgggaccgg 1201 gtgccctgcc ccatgcgatg ccccagttcc cgttcaacca tgtggcagcc gccgctgccg 1261 cgaaggcggt gggcggcacc ccgcacgcct tccatccgta caactttgcc agcgcagccg 1321 tcggcttgag ggcgcgaaat gcggcactgc atcaccagca gcagcagcac ctccagcagg 1381 acggcgcccc cattgtccac gtcagtcccg cctcctcgcg gccctcgagc tcctcgccgc 1441 agcagcagca gcagcacgtc ctcctcaagc tgaacacctc cattgagacc agctcgatac 1501 acgagcagtc cgccagcgac ggcgactcgg atgacgagca gatcgatgtg gtcaagtccg 1561 agttcgattt ggacaagagc ctggatgtga cgccgctgag aatgcgctgc gacttgaagg 1621 cgccctcggc gctgaagccc ctgtatcacg aaaccagctc gggactccaa tcctcgccgg 1681 agaccacgac caaaatcaag agcgccgccg tccagcagaa gaccgtgtgg cggccctatt 1741 aaaaccaggg ttcgatctca aggtttttgg gagcaggaga aaaaattata caaagtgata 1801 aaacagcggc ggcgcagagc ggcaagcggg caaaaaatta taattgtgat atagtgttat 1861 aagttgatga ggaagatgaa gacgcctccg gccggcaaac ggagcagcaa aaaaaaaaat 1921 cagaccagga ctcgaactcg aacccaaccc tggaaactca gactccggcg aagttttatg 1981 ctcggttaac ataaaatcgt gcgacgagtt tcgagtttcg acaggccctc gtttttcacc 2041 aggattttct acaaatccca gcggaaaaaa gaaaaatccc aactcaatcc aaaaacccta 2101 aaaaacttta gttaaattta atttcacaca cattttgtac atagctaaaa actagttgta 2161 acactcatta ctattttttt ttgaagaaac tccttttttt tcgatggata atatgcgaat 2221 ttagctattt ttaatcttta tgtttaaact agtcgtctaa gtgagaaatc aatttttttg 2281 tctagcccgt aagttttagc gcgaaaagaa aaatctaaca caaaaaatcg aatttgaaac 2341 aaaaccaaat aaaaaacaaa aatcacacac gaaaagtatt tacaaaaaaa