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LOCUS XM_017140721 1207 bp mRNA linear INV 09-DEC-2024 acetylhydrolase alpha (Paf-AHalpha), mRNA. ACCESSION XM_017140721 VERSION XM_017140721.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140721.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1207 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1207 /gene="Paf-AHalpha" /note="Platelet-activating factor acetylhydrolase alpha; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108056752" CDS 273..950 /gene="Paf-AHalpha" /codon_start=1 /product="platelet-activating factor acetylhydrolase IB subunit beta homolog" /protein_id="XP_016996210.1" /db_xref="GeneID:108056752" /translation="MNPCVLPTPLPDLDGDKRWHSIHRRFLSDCREKDPDVIFLGDCI FETVQDSEAWNQYFAPLHCLNFSIRDDCTEHVLWRIENGALDNVNPKIVVLHVGTNNV RNTADEVAEGVLANVSKIRQKLPNAYILLPSLLPRGQQPNKLREKNAQINELVNGLTR GQYRVQTVAIDKGLVQSDGSISHHDMFDYKNLTNAGAKKILEPLYDLLSQILNENEPE NDLTPSE" misc_feature 279..908 /gene="Paf-AHalpha" /note="PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate...; Region: PAF_acetylesterase_like; cd01820" /db_xref="CDD:238858" misc_feature order(399..401,480..482,570..572,834..836,843..845) /gene="Paf-AHalpha" /note="active site" /db_xref="CDD:238858" misc_feature order(399..401,834..836,843..845) /gene="Paf-AHalpha" /note="catalytic triad [active]" /db_xref="CDD:238858" misc_feature order(399..401,480..482,570..572) /gene="Paf-AHalpha" /note="oxyanion hole [active]" /db_xref="CDD:238858" misc_feature order(402..404,567..569,840..842) /gene="Paf-AHalpha" /note="specificity pocket [active]" /db_xref="CDD:238858" polyA_site 1207 /gene="Paf-AHalpha" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcacatttg cgaaaatatg ccaaaaaaaa gaggagtcaa ttgcaataaa ttcgcaataa 61 aaccgattta ttgaagtaaa caatattatt tggctgcttg aaaggaactg ctacagattg 121 actatagcat taaccgtgaa ctgagaggag aagaagatag ttagacatcc accgggacgc 181 agaagaagcc aatgccgcat tcgaaactaa actctgaata ggaaatctga atctaaatct 241 gaatctgaat ccttaaatcc ttaaaaccca ctatgaatcc ctgcgtgctg cccaccccgt 301 tgcccgactt ggacggcgac aagcgctggc acagcataca ccggcgcttc ctctccgact 361 gccgcgaaaa ggatcccgac gtgatcttcc tgggcgactg catcttcgag acggtccagg 421 acagcgaggc gtggaaccag tacttcgccc cgctgcactg cctcaacttc agcatccggg 481 acgactgcac cgagcacgta ctgtggcgca tcgagaacgg ggcgctggac aatgtgaatc 541 ccaagatcgt cgttctccat gtgggcacga ataatgtgag gaatacggcg gacgaggtgg 601 ccgaaggagt gctggcgaat gtctcgaaga tccgccagaa gctgcccaac gcctacatcc 661 tgctgccctc tttgctgccg cgcggacaac aaccgaataa gttgcgggag aagaatgcgc 721 aaatcaatga gctggtcaat ggactcaccc gcggtcagta tcgcgtccaa acggtggcca 781 tcgacaaggg actcgtccag agcgatggga gcatcagcca tcacgacatg ttcgactaca 841 agaacctcac caatgccggg gcgaaaaaga tccttgaacc gctgtacgat ttgctgtctc 901 aaattctcaa cgaaaacgaa cctgaaaacg atctcactcc ctccgaatga aaaggaatga 961 tcaggaagag cagcagctat cattattata tacattatat acatacgatt cccagaatat 1021 aaccccaaaa acaaatgtat ttttcgaact ctcaaaagca aaagctgcga gaccatctca 1081 caattaggca taagttttct tatcgattag taaacaacaa tcgcatatac cattgcagaa 1141 taacactatt ttacacgcat ctatttataa gaattgggta aaatacaagt tatcttaaag 1201 catctca