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LOCUS XM_017140712 5092 bp mRNA linear INV 09-DEC-2024 ABCA3 (LOC108056743), transcript variant X1, mRNA. ACCESSION XM_017140712 VERSION XM_017140712.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140712.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5092 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5092 /gene="LOC108056743" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056743" CDS 44..5044 /gene="LOC108056743" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_016996201.2" /db_xref="GeneID:108056743" /translation="MSCKIWYIFWLLAWKNFQKQKHNKLVLFLSLVLPVISALLLLIF CASNDRNLRDYSNRKEAKVLELNWSALVEKINARRKNMVKKQKDFEKNVFIPEIRVAF APNSNPSLRKLIDAALGKLSIGRDKIVDFQNCNDLRTHAAGEHYLASVCFRNADESRS GLPAVMHFAIIMPSELRNYERTWIGDSWKESSFLVDHDHEHDLWEAEDGHTDYLQEGF VALQYFISLEYLQTASKAEKLPTIQMRRFDENPNVLLSDGLEPSAILLILLGFMFPVA VLIKLIVEEREAGQRFVLEANNASATLQVAAWFFNAFFQLLLVSFLMALLLKIQWNGT SAALNKCPWSVLLLFLISYGFSVTSFVIFTAAVVRKPRTAVVVVPILWILLPLPFLSD EDLISEESHGFYAVATALICNVSFSRGLKKLIYLENYPVKVPSRKYLMYKVMDCDYGL WMPIACFYLQAITFVLTALMLENNTCIWMARTFGKMWKCKCARNRNLNLMGSEISGEP EKESSSARIEFRNVSKRFSKKFVVRNFTLSMHPGEVVVLLGHNSSGKRTIIKMAYGLM KPSAGEIYLSGFNVVTHKRLALRSCGISLTCSALFSEFSVFDHLVFFCRLRGLRRSEA KEEVRAYSHHLKIEKWQEAPVKRLSIGQKRLLVSLCAFVGRTQIVILDKPLDGVDEPK ANLFFDFVQDQKKNRSIFLTTNSPKVASGIADRIAILSRGKLLSFGTEKGLCQNLNEA YRLTLYGNEHCDFKEVQIFLENFVPDIEMAFTLGDSAVFLIKNKNQTELINLLENLSR FKEDLEVYSYQLEECSLDDILYKLFTRDQSSFEFGDLESHIFPIISRPRRRYIALIQH LWEVLRQRFLGDIRNRSLPLMKFTLPALMVIWTLSMPYFWDNCHQPEVIAFPTSDRPS GIILMQQNGGNKQLLKASKEYGKTGVTEVKPRLDIAKYIYGYERENSLLSDVDILEAA VFSEDEIEVLFNQRWHFTAPDSLARVMNSLAIALIGSDSGIKVELDPLPFSTVHTLQL HLNSDGIDLIFASCLSFAFCFVWSIPLLFMTLSPEGRYNYIELIAGMRMSILILAFLI YDMVAVLLALFPVNLAVICLQWDLLMDTDVILLSTYVLVAIALCVLSVNILISIGISD IHNGYLKLLVFYSLGIVAFIAVNELQITADRYVILLLILDFHPYYALLHNLMRIASIS ERIWLCRDGQIFETSVYSEQCLKTPNCCDASAREFPHFGYLWCIYLLTILVWISIFVF LRSQLVKRRPRQSKYFWDSDPDGQYDQNVLHISQPNELEDTWIAEKIRVSTLERNYIE SKVLHVEHLSVFFNMRAAIKHIDFMINRYQVLSIFGANGSGKTVLLKTILGIHSPSSG RIISSTGVPYKSHQLEGCHLMGYSGQEAQIFQTLTVGETIQLVLRIRRSSGESLREDA RKLCKIFGLHKYRFQLLSLCSRGILKRLSIGLALMSDAELILLDDPFTHLDVIAQRTV LRVIHELSRLGHSVIYTCSDTEFSPSALRMAALSQQGIAAIGERREIQQNYYSSYYVV ETRIHMPELNEEQHQQEGGLKPFRVVQPDNEDRWRYLKLCGLIEKVFPHAIIKTVGPP KACFWLSSHMYFMPQIVKTLQMNKLNFYSFSISQPSVNSIFLTISPQKIYRKGFPY" misc_feature <680..4723 /gene="LOC108056743" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" misc_feature 1592..2245 /gene="LOC108056743" /note="ATP-binding cassette domain of the lipid transporters, subfamily A; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:213230" misc_feature 1688..1711 /gene="LOC108056743" /note="Walker A/P-loop; other site" /db_xref="CDD:213230" misc_feature order(1697..1702,1706..1714,2057..2062,2153..2155) /gene="LOC108056743" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213230" misc_feature 1985..2014 /gene="LOC108056743" /note="ABC transporter signature motif; other site" /db_xref="CDD:213230" misc_feature 2045..2062 /gene="LOC108056743" /note="Walker B; other site" /db_xref="CDD:213230" misc_feature 2069..2080 /gene="LOC108056743" /note="D-loop; other site" /db_xref="CDD:213230" misc_feature 2141..2161 /gene="LOC108056743" /note="H-loop/switch region; other site" /db_xref="CDD:213230" misc_feature 4013..4576 /gene="LOC108056743" /note="ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230" /db_xref="CDD:213197" misc_feature 4109..4132 /gene="LOC108056743" /note="Walker A/P-loop; other site" /db_xref="CDD:213197" misc_feature order(4118..4123,4127..4135,4253..4255,4481..4486) /gene="LOC108056743" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213197" misc_feature 4244..4255 /gene="LOC108056743" /note="Q-loop/lid; other site" /db_xref="CDD:213197" misc_feature order(4301..4303,4412..4438) /gene="LOC108056743" /note="ABC transporter signature motif; other site" /db_xref="CDD:213197" misc_feature 4469..4486 /gene="LOC108056743" /note="Walker B; other site" /db_xref="CDD:213197" misc_feature 4493..4504 /gene="LOC108056743" /note="D-loop; other site" /db_xref="CDD:213197" polyA_site 5092 /gene="LOC108056743" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaaaagttt ccctcgtctt gttgttaaaa ataataactg ataatgtctt gcaaaatttg 61 gtatatattt tggctgttgg cttggaagaa tttccaaaag caaaaacaca acaaattagt 121 gctatttcta tcacttgttt tgcctgtgat ttcggcacta ttgcttttaa ttttctgtgc 181 ctcgaatgat cgaaatctga gagactactc gaaccggaag gaagcgaagg tattggagtt 241 gaattggagt gcgcttgtcg agaagataaa tgcgagacgc aagaacatgg tgaagaaaca 301 gaaagatttt gagaaaaacg ttttcatacc ggaaattcgg gtggccttcg cccccaattc 361 gaatccctcg ctgcgaaaac tcatcgatgc tgcgctgggg aaactttcca tcggccgcga 421 taagattgtt gactttcaaa attgcaacga tctgcggacg cacgccgccg gcgaacacta 481 tttggcaagt gtctgcttcc gcaatgcgga tgagtcaaga agtggcctgc ccgcggtgat 541 gcatttcgcg ataattatgc cctcggagct gcggaactac gagcgcactt ggatcggcga 601 cagctggaag gagagcagct tcctggtcga tcacgaccat gaacatgatc tctgggaggc 661 ggaggacggc cacacggatt atttgcaaga gggattcgtg gcgctgcaat acttcattag 721 cctggaatat ctacaaactg cctccaaggc ggaaaaattg ccgacaatcc agatgcgtcg 781 attcgacgag aatcccaatg tcctactctc cgacggactg gaaccctcgg ccatactgct 841 catccttctc ggcttcatgt tcccagtggc tgtactcatt aagttgattg tggaggaacg 901 cgaggctgga cagcgattcg tgctggaggc gaataacgcc agtgccacgt tgcaggtggc 961 ggcctggttc ttcaatgcct tcttccagtt gctcctggtc tcgtttctca tggctctctt 1021 actgaagatc cagtggaacg gaacgtcggc agcattgaat aagtgcccct ggtcggtgct 1081 gctgctcttt ctcatctcct atggcttctc ggtgaccagt tttgtgatct tcacagcggc 1141 ggtggtgcgc aaaccgagga cagcagtggt cgtggttccg atcctatgga ttctactgcc 1201 ccttcccttt ctatcggatg aggacctgat ctccgaggag tcacacggtt tctatgccgt 1261 ggccaccgct ttaatctgca atgtatcttt tagtcggggc ctcaagaagt tgatttacct 1321 ggaaaactat cccgtcaaag tgccgtctag aaaatatctg atgtacaaag taatggactg 1381 tgattatgga ttgtggatgc ccatcgcatg cttctacttg caggccataa ccttcgttct 1441 aaccgccttg atgctggaaa ataatacctg tatttggatg gctcgtactt ttgggaaaat 1501 gtggaaatgt aaatgtgcta ggaacagaaa cctaaacctg atgggatctg aaatctcagg 1561 tgaaccggag aaggaatctt cctctgcgcg cattgaattt cgtaacgtat cgaaaaggtt 1621 ttccaaaaag tttgtggttc ggaatttcac cttgagtatg catcccggcg aggtggtggt 1681 cctactgggt cacaattcat cgggcaagag aacgatcatc aagatggcct atggattgat 1741 gaaaccctct gcgggagaga tctacctatc cggattcaac gtagtcactc acaaaaggct 1801 cgcacttcgc agctgcggaa tttccctgac ttgcagcgct ctcttctccg agttcagcgt 1861 gtttgaccat ctggtattct tctgccggct gcgaggactg cgaagatcgg aagccaagga 1921 ggaggtgcgg gcctatagtc accatttgaa gatcgaaaag tggcaggagg caccggtgaa 1981 gcgattgagc atcggccaga agaggctcct cgtatcgctt tgtgccttcg tgggccgcac 2041 acagatcgta atactcgaca aacccctcga tggcgtcgat gagcccaagg ccaatctgtt 2101 cttcgacttt gttcaggatc aaaagaagaa tcgctccatt ttcctgacca ccaatagtcc 2161 caaggtggcc agcggaattg ccgatcgcat tgccattctt tcgcggggca aactcttgtc 2221 atttggaact gaaaaagggc tgtgccagaa cttgaatgag gcctacagat tgactctcta 2281 tggcaacgag cactgcgatt tcaaggaggt gcagatattt ttggaaaact ttgttcccga 2341 catcgagatg gccttcacct tgggtgattc ggctgtgttc ctaatcaaga ataaaaacca 2401 aacggaattg attaatttgc tggagaattt gtcgcgattc aaggaggatc tggaggtgta 2461 tagctatcaa ctggaggaat gcagcctgga tgacatcctc tacaaactat ttacccgtga 2521 ccaatcgagt tttgagtttg gagacttgga atcccacata tttcccataa tcagccggcc 2581 cagaaggaga tatattgcgc tgatccagca tctttgggag gttcttcgcc aacgtttctt 2641 gggagatatt cgaaaccgct ctctgcccct gatgaaattc actctgccgg cattgatggt 2701 catctggacc cttagcatgc cgtatttctg ggacaactgc catcaaccgg aggtgattgc 2761 ttttcccacc tccgatcgtc catcgggcat cattctgatg caacaaaatg gaggtaacaa 2821 gcagctatta aaagcctcca aggagtacgg caaaacagga gtcaccgaag ttaaacctcg 2881 gctagacatt gccaagtaca tctatggtta tgaaagggaa aacagtctgt tgtcggacgt 2941 ggacattctg gaggcggccg tattttccga ggacgagatc gaggtgctct tcaaccagcg 3001 atggcatttc acagcacccg atagcttggc acgggtcatg aactccctgg caattgccct 3061 catcggttcc gattcgggga tcaaggtgga actggatccg ctgcccttct ccacggtcca 3121 cacgctgcaa ttgcatctga acagcgatgg catcgacctg atcttcgcca gctgcctgag 3181 cttcgccttc tgctttgttt ggagcatccc gctgctcttc atgaccctga gtcccgaggg 3241 tcgttacaac tacattgaac tgattgccgg aatgcggatg agcatcttga ttctggcctt 3301 cctcatctac gacatggttg ccgtgttgct cgcccttttt ccggtaaact tggctgtcat 3361 ttgcctgcag tgggaccttc taatggacac cgatgtcatc ttgctttcca cctacgtcct 3421 ggtggccatt gccctctgcg tgctcagcgt gaatatcctg atatccatcg gcatctcgga 3481 catccacaat ggctatctga agctactcgt tttctattca ctcggcattg tggcctttat 3541 tgcggtgaac gaactacaaa tcaccgccga tcgttatgtg attctcctgc tcatcctgga 3601 cttccatccg tattatgcgc tactccataa tctgatgagg attgccagca tttcggaaag 3661 gatatggttg tgcagggatg ggcagatctt tgagaccagt gtttactcgg agcagtgcct 3721 caaaacgccc aactgctgtg atgccagtgc tcgggagttc ccccatttcg ggtacctttg 3781 gtgtatttac ctattgacca tcctggtgtg gatctctata ttcgttttcc tccgatcgca 3841 attggtgaag cgcaggccac gacaaagcaa atacttttgg gacagtgatc cagatggcca 3901 atatgaccag aatgttttgc acatttcgca accgaatgag ctggaggata cttggatagc 3961 cgaaaagata cgtgttagca cactggaacg taattatata gagagcaagg tgctgcatgt 4021 ggagcatttg agcgtgtttt tcaacatgag ggcggccata aagcacatag acttcatgat 4081 caatcgctat caagttttga gcattttcgg ggccaatgga agtggaaaga ctgttctgct 4141 gaagaccatc ttgggcattc actcgcccag ctcgggaagg ataataagct cgactggggt 4201 gccgtacaag tcgcaccagc tggagggctg ccatctgatg ggctacagtg gccaggaggc 4261 gcagatcttt cagacgctga ccgtagggga gaccatccag ttggtgctcc gcatccggag 4321 gtcgagtggc gaatctttga gggaggatgc caggaaattg tgcaagatat tcggcctgca 4381 caagtatcgc tttcaattgc tatcgctctg cagtcgcggc atcctgaagc gactgagcat 4441 tggcctcgcc ctgatgagcg atgccgagct catcctgctg gacgatccct tcacccacct 4501 ggacgtcatc gcccagcgca ccgtgctccg cgtcattcat gagctgtccc gcctcggcca 4561 ctcggtgatc tacacctgct ccgacaccga gttctcgccc tcggccctgc gaatggctgc 4621 ccttagccag caggggatcg ccgccatcgg ggagcgtcgc gagatccagc agaactacta 4681 ctcatcgtac tatgtcgtcg agacccgcat ccatatgccc gaactgaatg aggagcagca 4741 ccagcaggaa ggtggcttga aaccatttcg agtcgtccag ccggacaacg aggatcggtg 4801 gaggtacctc aagctgtgcg ggctcatcga aaaagtattt ccccatgcaa ttatcaagac 4861 tgtcggaccg ccgaaggcct gtttctggtt gtccagccat atgtacttca tgccccaaat 4921 tgtcaaaacg ctccagatga acaagctcaa cttctactca ttttcaattt cccagccctc 4981 ggtgaattcc atttttctaa ccattagtcc ccagaaaatt tatagaaagg gatttcccta 5041 ctaataataa ggctttctaa ttctataata tattgtgata aaaaaacaag aa