PREDICTED: Drosophila takahashii suppression of retinal

LOCUS       XM_017140708            1370 bp    mRNA    linear   INV 09-DEC-2024
            degeneration disease 1 upon overexpression 1 (LOC108056742),
            transcript variant X1, mRNA.
ACCESSION   XM_017140708
VERSION     XM_017140708.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017140708.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1370
                     /gene="LOC108056742"
                     /note="suppression of retinal degeneration disease 1 upon
                     overexpression 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 Proteins"
                     /db_xref="GeneID:108056742"
     CDS             190..1002
                     /gene="LOC108056742"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF185"
                     /protein_id="XP_016996197.1"
                     /db_xref="GeneID:108056742"
                     /translation="MEEPKMELPTTSSGASSSSIQPTENVSYDKIAWSSRDITEPLAE
                     ESATSQLRPLGTSISADSTAEASASNTSYSFTGDYLSGGNKADLKSTSSEAESGPKAA
                     EKDKEKEQNDESLYECNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKA
                     AVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGHRTEPDPAPGFPGFGFGDGFHMSFGIG
                     AFPFGFITSSLNFGEPRPAAANRGTTQYEDEQTLSKLFLYLAFMCIAWLFFT"
     misc_feature    535..705
                     /gene="LOC108056742"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 185 (RNF185) and similar proteins; Region:
                     RING-HC_RNF185; cd16744"
                     /db_xref="CDD:438402"
     polyA_site      1370
                     /gene="LOC108056742"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 caggtatcgt ccgagcaatt gttttgaggt gttaagacgt caattgataa attaccaatt
       61 ttaccacaat tcacctgatt tttccactca cccctttgat aacggtcctc gatttggtgc
      121 atttacattg agcacggcaa gctgaacgtc gaaaactaac tcggttatca gcatcctggg
      181 cgaacaacca tggaagagcc gaaaatggag ctgcccacca catcgtcggg ggcatcctca
      241 tcctccatcc aacccactga aaacgtgagc tacgacaaga tcgcctggtc atcgcgggac
      301 atcacagaac cgctggcgga ggagtccgcc accagtcaat tgcgacccct gggcacctcg
      361 atctcagccg attcgacggc tgaggccagt gcatccaaca catcgtactc cttcacaggc
      421 gactaccttt ccgggggcaa caaggcggat ttgaagtcca cctcctcgga ggcggaaagt
      481 gggccaaagg ccgccgagaa ggacaaggag aaggagcaga acgacgagtc gctctacgag
      541 tgcaacattt gcctggacac ggccaaggat gcggtggtca gcatgtgtgg gcacctcttc
      601 tgctggccct gcctgcacca gtggctcctg acgcgaccca atcgcaagct atgtcccgtc
      661 tgcaaggcgg ccgtcgacaa ggacaaggtc ataccgctct acggcaggaa tagtacacac
      721 caggaagatc ctcgaaacaa agttccacca cgccccgctg gccatcgtac agaaccagat
      781 cctgctcccg gttttcctgg cttcggattc ggcgacggct ttcacatgtc cttcggcatc
      841 ggcgcctttc cctttggctt cataacatct tcactaaatt tcggcgagcc tcgtcctgct
      901 gctgccaatc gtggcacaac gcaatacgag gacgagcaga ccctttccaa gctctttttg
      961 tatctggcct tcatgtgcat cgcctggctg ttcttcacat agccagctga gggcccctaa
     1021 gatcataact tgtattgaaa tgcgcatgga cggcgtccga agtaatcata ttgcagtatc
     1081 ctccagttaa agcaacaaca atattcttaa acacgttggg taaaaaagta aaagtcgttg
     1141 gtgtaattaa ctaaagaata aatctactac tttttcggtt caaattgtga aagagaaaaa
     1201 tggataatgg atgggaatgt gcaatcccca tgctatttca aatagttcaa catataaaat
     1261 catttcttct gtatgttctc ggatcgcatt gatttaataa aaaaaagtag ttgtcaaaaa
     1321 atgtaaaaat atatatatat ataataataa agtcaataat acaaaatgaa