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LOCUS XM_017140703 2620 bp mRNA linear INV 09-DEC-2024 (Rhp), transcript variant X1, mRNA. ACCESSION XM_017140703 VERSION XM_017140703.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140703.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2620 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2620 /gene="Rhp" /note="GTP-Rho-binding protein rhophilin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056740" CDS 217..2394 /gene="Rhp" /codon_start=1 /product="rhophilin-2-A isoform X1" /protein_id="XP_016996192.2" /db_xref="GeneID:108056740" /translation="MFNLGAMDGKTDELAQRAGKNEENEDDEKLNELSFCFVRGSDPR AATCRSKLQNRRCKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQL LKEQLAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEEPSMY IDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDRNLGVYFEWYDSL TGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTERGLDLAVDSFLRAAGIFRHIY DTFTNAPSMDLKPQVLDVLVSLMLSQARECLFEKLQLQIEAIGLSEFSCSDSQSFRDL AGEAAQISHEYNEMHKNIQANDTHTYLPECWAGLVPVKAELYKAFAHFYKARSIDATD EIKVSRNQDKLSTESFIGNSQEVESNFGTSEEAATSNANKLAHLKEALASIEEAQRLQ RMCRYLKNKSSLTEVMKEVHSKSQEELDRFRLQASANNIEEGDLLERVVEASSKFTLS LTGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSSYHNVPANNRCPLDN DDEEHDGGFNLYKEEFENFGFHVRGDAPVIIAHVEINSLADLGGIKEGDFIVEIAGMD VKWYSHQQVVQLIQSCGSALELRVITPMDRNYLKPLSSKGSLSTLSAASSSGISSGFP SPTSIAAKPKLHLKTSSSSRAAGSVSSSSWNPFRRTPSLAKIF" misc_feature 334..588 /gene="Rhp" /note="Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1; Region: HR1_Rhophilin-1; cd11633" /db_xref="CDD:212023" misc_feature order(385..387,394..396,403..408,415..420,424..429, 436..441,445..450,493..498,505..507,514..519,526..528) /gene="Rhp" /note="putative Rho binding site 1 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature order(409..414,418..423,430..435,439..444,451..456, 478..483,487..489) /gene="Rhp" /note="putative Rho binding site 2 [polypeptide binding]; other site" /db_xref="CDD:212023" misc_feature 598..1785 /gene="Rhp" /note="Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains; Region: BRO1_Rhophilin; cd09244" /db_xref="CDD:185767" misc_feature order(943..945,952..954,991..993,1000..1005,1135..1137, 1144..1149,1204..1206,1213..1218,1735..1737,1741..1743, 1747..1749,1753..1755) /gene="Rhp" /note="putative ESCRT-III binding site; other site" /db_xref="CDD:185767" misc_feature 1969..2163 /gene="Rhp" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature order(1969..1986,2008..2010,2017..2019,2104..2106, 2116..2118,2125..2130) /gene="Rhp" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467153" polyA_site 2620 /gene="Rhp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagacttt acggtggttc ggaaactcgt acctggcgct atagttgtcg aaaggtaaca 61 gtaacctgtt gctttttttt tggtaatagt ggaaagtgta gtgaagacaa gtcaacatag 121 ctgatattaa gctgaaatgc tgtccagcca gtgctaaaaa tattacgttt accaaaatag 181 tataaacact taagaggact cccatcggat ctccgaatgt ttaatcttgg agccatggat 241 gggaaaaccg atgaactggc ccagagagct gggaaaaatg aggagaacga ggatgacgag 301 aagctgaatg agttatcctt ctgttttgtt cggggttccg atcccagagc ggcaacatgt 361 cgtagcaaac tgcaaaacag gcggtgcaag ttgaacaaag agattaacaa ggaactccgc 421 ttaagagctg gtgctgagaa tctatataag gccacatcca accgaaagtt acgagacaca 481 gttgccttgg aactgagctt tgtcaattca aatttgcaat tgctgaagga gcagctggct 541 gagttgaatt cctcggtgga aatctatcag agtgaaagtc acaatggcat tatgcccatg 601 ataccactgg gcttgaagga aaccaaggag attaacttta tggaaccgtt ttccgacttc 661 attttggaac actacagcga agagccctcg atgtacatag atgccatagc ggatatgaca 721 gatacgagac aggcctccaa aacgccatca cgtgacgccc tcggggtggc gctacttttc 781 cgctactaca acacactgta ctacgtggag cgtcgcttct ttccgcccga tcgcaatttg 841 ggtgtctact tcgagtggta cgactccctg acgggcgttc cctcgtgcca gcgcaccatt 901 gccttcgaga aggcctgcac cctgttcaat ctggggggga tatacaccca gatcggggcc 961 cggcatgatc gcaccaccga aaggggtctc gatttggccg tggatagctt tctccgggca 1021 gcagggatct tccgtcacat ctacgataca ttcacgaatg ccccttcgat ggatctgaag 1081 ccgcaggtcc tcgatgtcct tgtctcgctg atgctctccc aggcacgcga gtgtctcttc 1141 gagaagttgc agctgcagat cgaggcgata ggtctctccg aattcagttg ctccgattcg 1201 cagtcgtttc gggatttggc cggagaggct gcccagatat cgcacgagta caatgagatg 1261 cacaagaata tccaggcgaa cgatacgcac acatatctgc cggaatgttg ggctggtctg 1321 gtgccagtca aggcggaact ctacaaagct tttgcccatt tctacaaggc acgcagcata 1381 gatgcgacgg acgagatcaa ggtgtccagg aaccaggaca aattatccac ggaatccttt 1441 atcggcaact cccaggaggt ggagtccaat tttggcacca gcgaggaggc cgccacttcc 1501 aacgccaaca agctggctca tctgaaggag gcactggcca gcatcgagga ggcccagcga 1561 ttgcagcgaa tgtgtcggta cctaaagaac aagtcatcgc tcactgaggt catgaaggag 1621 gtgcattcca agtcgcagga ggagttggat aggttcagac ttcaggcttc ggcgaataat 1681 atcgaagagg gcgaccttct ggagcgagtc gttgaagctt cctcaaagtt cacgttatcc 1741 ctgacgggac ccgatttcac ctcgcacaag gtgaaggatc ccttcaagcg cctcgggccc 1801 attgcaatct tctcggcgcg acgccactgg actgcgccgc gatgtgtgcg cctgcagaag 1861 ggttcatcct cgtaccacaa cgtgcccgcc aataacagat gtccgctgga caacgacgac 1921 gaggagcacg acggcggctt caatctgtac aaggaggagt tcgagaactt tggcttccat 1981 gtgcgcggcg atgcgccggt cataattgcc cacgttgaga tcaattcgct ggcagacctg 2041 ggcggcatca aggaggggga cttcatagtc gagatagctg gcatggatgt caagtggtat 2101 tcgcatcagc aggtcgtcca gctcatccag tcgtgcggct ccgcactcga gctgcgggtc 2161 ataacgccca tggatcgcaa ctatctgaag cctctgtcgt cgaagggctc gctgtccacg 2221 ctctcggcgg ccagctcatc gggcatctcc tccggctttc ccagtcccac gagcattgcg 2281 gccaagccca agcttcatct gaaaacgtcg tccagttcgc gagccgccgg cagcgtttcg 2341 tccagttcgt ggaatccctt tcggcgaact ccgagcttag ctaaaatatt ttaggtagcg 2401 accagtttta ctttgtgttt tcttggccat ttcagtttag agctaatgtt aggcaataaa 2461 cttaattatt ttttacaaac ttaatcatgc atcacgttcg ttaaattata aacttattta 2521 attttcctcc tcctcttctc ccaccaagaa ataatctgct aaataaaaat taactctaat 2581 cattttattt tttgtaaata aatcaaaata attaccttca