PREDICTED: Drosophila takahashii leucine-rich repeat

LOCUS       XM_017140690            1789 bp    mRNA    linear   INV 09-DEC-2024
            flightless-interacting protein 2 (LOC108056736), transcript variant
            X1, mRNA.
ACCESSION   XM_017140690
VERSION     XM_017140690.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017140690.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1789
                     /gene="LOC108056736"
                     /note="leucine-rich repeat flightless-interacting protein
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:108056736"
     CDS             144..1334
                     /gene="LOC108056736"
                     /codon_start=1
                     /product="leucine-rich repeat flightless-interacting
                     protein 2"
                     /protein_id="XP_016996179.1"
                     /db_xref="GeneID:108056736"
                     /translation="MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEA
                     REIRMKELERQQKEQEITADRVFDMQNSTAVGPEPLSVHPVRLVYGGLLNVTRASASR
                     RSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYEVKLLKDKCEI
                     MEESFAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQLNERDSLIAEQGLLIVAVE
                     NADGSDAKRALVSVENAKVLASVQGSLDVRLKKFSDEKQRLLSEVQKLHEQLDEYKSD
                     GMTGRRSLSQGSFGDENDYEAQRESNKIISDHKYKLQKAEQEIANLQSSLARSETQVI
                     RYKSTAEAAEKAEAELKVERRKLQREHREILEKLEEAETSNNHLLKRLDKLKNAKSAI
                     LKDL"
     misc_feature    282..1106
                     /gene="LOC108056736"
                     /note="LRRFIP family; Region: LRRFIP; pfam09738"
                     /db_xref="CDD:462869"
     polyA_site      1789
                     /gene="LOC108056736"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tctatcgatc catcgatttt tcgcccatct ctaatgtgat taattgtgat tttgttcgct
       61 aaaaaggtgc cccaaaactt tttatgtcgt gcgaccgcat acgctaatta taaaacgtaa
      121 agttaaaatt gagctcagat tcaatggaaa gtatcagcac cacaggtcgg cgacggaaca
      181 acatgcgaat caatgccgag gataatgccc tggatcaaat tacaaaagag gcggaagcgc
      241 gactggccgc gcgtcgacag gcgcgtgccg aggcccggga gatccgcatg aaggagctgg
      301 agcggcagca gaaggagcag gagataaccg ccgaccgggt gttcgacatg cagaactcca
      361 ctgcagtggg cccagagccc ctctccgtgc atcccgtgcg cctcgtctac ggcggcctgc
      421 taaacgtaac ccgtgcctca gcctcccgcc gcagcagcga ggactccgtg gaggaggagg
      481 gccgaagttt tcgcgacttc aagcacgagc ttaaggatgt cgaagaacgg tttcggaagg
      541 ccatgataac aaacgcccaa ctggacaacg atcgcgcctc gcaggcctac gaggttaagc
      601 tgcttaaaga caagtgcgag atcatggagg agtcattcgc acagctgcag cgcgagttca
      661 aggagaagat gcgcgactgc aatgccctca agcggaacct ggaccgcgcc aatctggagc
      721 ttaaactagt acaaggacag ctgaacgagc gcgactcgtt gatagccgag cagggcctgc
      781 tgattgtggc ggtggagaat gccgatggca gcgatgccaa gcgggctcta gtgagtgtgg
      841 agaatgccaa ggttctggcc tccgttcagg gttctctaga cgtaagactt aagaagttca
      901 gtgacgagaa acagcgactg ctgtccgagg tgcaaaagct gcacgagcag ctggatgagt
      961 ataagagcga tgggatgact ggacgtcgca gtctttcgca aggttccttt ggtgatgaga
     1021 atgactacga ggcccaacgg gaatcaaaca aaatcatttc agaccataaa tataagctgc
     1081 agaaggcgga gcaggagatc gccaacctgc agtcgagctt agcccgttca gagactcagg
     1141 tgattcggta caagagcact gcggaagccg ccgaaaaggc ggaggcagag ctgaaggtcg
     1201 agcgccgcaa gcttcagcgc gagcatcggg aaattttgga aaaactggaa gaggccgaaa
     1261 cgtcaaacaa ccacttgctg aagcggctcg acaagcttaa aaacgctaag agtgccattc
     1321 taaaggactt atgatcgaag atgggaggag ctgcaatctc gccaaccatt gaaaggtcgc
     1381 atccgatgac atagaagaca gaaaacagta cgacatcatc aacatacaaa tgctgcaatt
     1441 aaaatagcac ttcggtagca acttaatcgg tcttagtggt agcaaaacga tcatttttga
     1501 aggataatcc aaaatactct accttaaaaa catatattta aattaaaata taaactaaca
     1561 ggataataat taacataaat aatgtctata tgtatatgta aagcgcaaaa tataagtaac
     1621 aattcaattg gttcggcagt gtgtgtgtgt gaaatcattt tttttacaaa aacgcgtaga
     1681 aaatcccatt attgatcgaa ttatttgtat tctattgcta gaaatccgtt tcatcggccg
     1741 cgatctccca acggaacgcc caataaatgc catttttaag aaaagttaa