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LOCUS XM_017140663 4374 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X2, mRNA. ACCESSION XM_017140663 VERSION XM_017140663.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140663.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4374 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4374 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056726" CDS 197..3118 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X2" /protein_id="XP_016996152.2" /db_xref="GeneID:108056726" /translation="MYPYYEQDWSVLPPENNRRFNPAFNMATIRQAFTEAVERVRMPT PTRLRDLIRQIRAARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGY PAHFGQLECLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVV GLALCTLGAIASPEMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLP ATRSLLSEKNHGILITGVTLITEMCENSSDTLMHFKKIVPNLVRILKNLILGGYSPEH DVSGVSDPFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETV LSIMDIRSEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTIL ECLKDPDVSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAE RYSPTTRWHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVA NHCEDKQPLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTS KQYALVSLAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPL LEKMPAMQISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNI LLDLLGSTDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDL TTPSSTTTTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGS ASIATNGNDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQG PRLTALDRDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTP SGSVLPPGGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAE E" misc_feature 398..2050 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2777..3088 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4374 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcaggagtt tccaccgctc gggctggaaa tgatcgccta gctacagcta gagagtcgga 61 aaagcagagc gttacctgct aactattagt gtacattaga taaggcctat gtggagcact 121 cggcgcttat cgtatcgctg acattcccct tccagtcggt ttagttccga gctccagtga 181 gaagtgagag gcgaccatgt atccgtatta cgagcaggac tggagtgttc tgccgccgga 241 gaacaatcgc agattcaatc cagccttcaa tatggccacc atacggcagg cgttcacaga 301 ggcggtggag agagtcagaa tgcctacgcc cacacgcctg cgcgacctca tccgacagat 361 tcgcgccgcc agaaccgccg ccgaggagcg ggcggtggtc aacaaagagt gcgcctacat 421 acggagcact ttccgcgagg aggactccgt ctggcgctgt cgcaacattg ccaagctgct 481 gtacatacac atgctcggct atccggctca ctttggccaa ctggagtgcc ttaagctgac 541 ggccagcacg cggttcacag acaagcggat cggatacctg ggcgccatgc tgctgctgga 601 tgagcggcag gatgtccacc tgctcatcac caactgcttg aagaacgact tgaacagctc 661 gacgcagttc gtcgtgggcc tggccctgtg cactctgggc gcgatcgcct caccggaaat 721 ggcccgggat ctggccagcg aggtggagcg tctgatgaag tccccgaaca cgtacatccg 781 caagaaggcg acgctgtgcg cctttcgcgt catccgccgt gtgcccgagc tgatggagat 841 cttcttgccg gccacgcgtt ccctgctcag cgagaagaat catggcattt tgatcactgg 901 cgttacgctc atcacggaga tgtgcgagaa cagctcggac acgctgatgc atttcaagaa 961 gattgtgccg aatctggtgc gcatcctgaa gaacctgatc ctgggcggct attcgccgga 1021 gcacgacgtc agcggggtga gcgatccctt cctgcaggtg aagatcctgc ggctgctgcg 1081 cattctgggc cacaacgatc cggacgcctc ggaagcgatg aacgacatcc tggcccaggt 1141 ggccaccaac acggagacga gcaagaatgt gggcaacacg attctctacg agacggtgct 1201 ttctattatg gatatacgct cggagggtgg actgcgcgtg ctggccgtca atatcctggg 1261 acgattcctg ctcaactcgg acaagaacat acggtatgtg gcgctgaaca cgctgctgcg 1321 aaccgtccac gcggacacgt cggcggtgca gcggcatcgc accaccattc tggagtgcct 1381 caaggatccc gatgtctcca tacgccggcg tgccatggag ctctcgttcg cgctgatcaa 1441 tgcacaaaac atacgtacaa tgaccaagga gctgctgctc ttcctcgaga aggccgacgc 1501 ggagttcaag gcgcagtgca gctcgggcat gatcctggcc gccgaacgct attcgcccac 1561 cactcgctgg catttggata cgcagttgag cgtccttatt gcggccggga attatgtgcg 1621 cgacgacgtc gtctcctcca ccatccagct ggtgtccagc agtcccctcc cggagcagac 1681 gtacatcacg aaccgtttct gggagtcgct gcaggtggcc aatcattgcg aggacaagca 1741 gccgctcctc caggtcgccg tctgggccat aggcgagtac ggcgatctct ttatgtacgg 1801 cgccaacgag gatgagtttg aacggcccac tgagagcgat ctgatcgctg tgtatcataa 1861 gtttttaacc tctgctcaag tctcgaccac aagcaagcaa tatgctctgg tctccctagc 1921 caagctaagc acacgtctgc agcagtgcgt agaggaaatc caggcgctga tcacctcctt 1981 tggcagccat ctgaatgtcg atctgcagca gcggggcgtg gagttcacgc agctattcgg 2041 tcactacaag catctgcgtc cgccgcttct cgagaagatg ccggccatgc agatcagcag 2101 gataagctcg cagaacggcg agagcggcgg cggctccttc gacgacaaca gtccggatgt 2161 cattgaaaat ggtgaaagtg gcggtggcgg acactcacta atcgaaagca atatgaacac 2221 tctgggcgac aatacgaaca ttctgctgga tctgctgggc agcacggatc tgtcggcggg 2281 cggcgctggc gatttggtgg cagccacgga tctctcgaat gccgtgcata aaaagaactc 2341 gcgcaatgcc aacgatgtgg tggtggcgcc cgtttccaac aatcaggatc tgttggatct 2401 gctcgacttg gatctgacca cgccctcgtc cacgacgacg acgacggctg gtgcgccaac 2461 gggcgtggga ggaggaggag gcggcattct ggccttggcc ggtgataata atcagagcag 2521 tgcagcgaac atgaataaca tgctgggtgg cctggacctg ggtggctttg gatccggtct 2581 ggatggctcg gcgagcatag ccacgaacgg caacgatttg gccagcatgc tgggcggatt 2641 gggcggagct gctccaccct tggcggctcc agctgctccc gtgggcaacc tcatcgtcga 2701 tggccatggc ggcagcttgc tgggcgattt gaatcccaac aatgtagaag tgcctccaca 2761 gggtcccagg ctgactgcgc tggacaggga tggattgctg gtgcaactag tttcggtcag 2821 gggcagcgac tgcatgcgca tctatatgac gaccacgaat agctcagaca atacgctgga 2881 gcagtacttg ctaaaggcgg cggttcagaa gagtttccag ctgcaaatgc tgacgccctc 2941 cggttcggtg ctgcctcctg gaggagtgat cacgcaggag atgcgggtgg tggccacgtc 3001 gaatgcgaca ctgaggatgc ggctgcgcat ccagtacgtg ctcgatggcc agcagcaggt 3061 agagcagacg gaggtcagcg gattccccga gcaacagccg gcggtggccg aggagtagag 3121 ccacggcaac tgtattaaag caaaccagat tagcctaata tcggaaataa atcaacacgg 3181 gcaacttgcg cagcagcagc aacactaaaa aacacacaca cacactgtgg ttgtcacaca 3241 tttattgtaa aataagttat cacacacagt aaaacagaac acacgcaatc gcaatcgcag 3301 tcgcagtcgc attcgcatct agatcagagc attttctcgg tggcagagaa atcaagggat 3361 atacccaagc agttaactta tatattttgt ctaatttata tctctatact tatatttaca 3421 aaaacacact acttgtcaaa tcaaaactct ttacgtttat cttgttttat tataaataat 3481 tttctcattc taaatggtgt gtaaactttt gtgtgtaaaa gacaactttc agttttaatt 3541 taagacaata aaagtcaaat ccccagatat cccccccatt aaagaatggc aactaacaaa 3601 gaaagaacag aaatgtatta aaaccgattg tgaaattatg tagcaaaagc atttaaaaaa 3661 gcttagcatt ttaaaggaat cgaaacgatg gagcgagttg aatgtttgag gccatttcgc 3721 gcagtttatt tgttatttct atatgtaatg agtgtttgtt ttctgttttc cctgagtcct 3781 gagtcctatt gagtcttact gatcctgatc ctgatattcc ttcttattta ccccgccaaa 3841 cacattcata ttatatataa atatatacag aacagacaca cacacgacca cgcggatata 3901 tattatatta tgtattgtta tttcctgtgc gcacgtactt aaagcggaga tcagcagcaa 3961 ccagagaaag tctaaagaat aaagagaaaa acacaaacca gatagcactg tggaaaacta 4021 gataatatct atgataaatg ataaatataa ttgtaacgga ggaggacgca gcttagaact 4081 atataaactg attagttgcc gtcgccgatg atgatcagga tgatcagatg atgatgataa 4141 ggggcatcga gaagcaaaga aaatccatta actattatta ttattattat gattataaat 4201 gaattacgca gctgtatgag aatgaaagag agagagataa gaaaataata acattaacat 4261 attgtacaat atattattat ttttgtatta ctatcatttc cttttatatc tacttatatt 4321 ccacaaacct tttgagccga aataaacaaa cgatttcgtt ttatcgaagg acaa