PREDICTED: Drosophila takahashii brachyurin (LOC108056725), mRNA.

LOCUS       XM_017140661            1158 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017140661
VERSION     XM_017140661.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017140661.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1158
                     /gene="LOC108056725"
                     /note="brachyurin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins"
                     /db_xref="GeneID:108056725"
     CDS             289..1116
                     /gene="LOC108056725"
                     /codon_start=1
                     /product="brachyurin"
                     /protein_id="XP_016996150.2"
                     /db_xref="GeneID:108056725"
                     /translation="MALNGEKSLVAFLLGGITVIALLIQTSEAAAIEGRIISGSQAKL
                     GQFPWQVILKRDEYDDLLCGGSIISATCVLTAAHCTVGQSSIFLIFGSVQLDNASAQS
                     MTSTNIIVHPNYNENLNNDVSLIKLPEALVFSTNIQPIQLVSESQKSNSFVGNTAIIA
                     GFGLMDDEYLDYSQDLLYAKVEVINNQECLPIYGSIVVLDSTLCARGHGGSNMSICSG
                     DSGGPLIEYNATNGQWQQIGINSFVAEDQCTASYPSGYVRLTSFLSFIAQNTEDVVV"
     misc_feature    391..1086
                     /gene="LOC108056725"
                     /note="Trypsin-like serine protease; Region: Tryp_SPc;
                     smart00020"
                     /db_xref="CDD:214473"
     misc_feature    394..396
                     /gene="LOC108056725"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     misc_feature    order(520..522,649..651,946..948)
                     /gene="LOC108056725"
                     /note="active site"
                     /db_xref="CDD:238113"
     misc_feature    order(928..930,1009..1011,1015..1017)
                     /gene="LOC108056725"
                     /note="substrate binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238113"
     polyA_site      1158
                     /gene="LOC108056725"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aacaaaaaca ttggtgttcg cggaaaacaa taaacacaaa tcacttctaa aaccgttcac
       61 gttcgtagaa gcaattaaaa gtcggcgtta ataacagggg aattagtgag agataccatt
      121 cggtattgaa agagcaagac ctacgtcgaa tttaccaagt taagtcgcca gttaatctta
      181 tcagaaagtc acaatgttaa aaaaaaattt cgtgcaaaat acagagataa aagatagtcg
      241 ttgtgagtca agaaattaat taagttaact tccgacagag cacaagacat ggcgctaaac
      301 ggcgagaaat ccttggtggc ttttctttta gggggtatta cagttattgc cctgctaatc
      361 caaacctccg aggcggccgc aatagaagga cgaattatat cgggatcgca ggcgaaactg
      421 ggccaattcc cgtggcaggt gatcctgaag agggacgaat acgatgatct actctgcgga
      481 ggatctatta tctcggctac ttgtgtgctg actgccgcac attgcaccgt tggtcaatcc
      541 tcgatcttcc taatcttcgg cagcgtgcag ctggataatg cgagtgccca gagcatgacc
      601 tccacgaaca tcattgtgca tccgaactac aatgagaatc tgaacaatga tgtgtcgctt
      661 ataaaactcc ccgaggcact agtattctct accaacatcc aacccattca gctggtttcg
      721 gagtcgcaga aatcgaacag tttcgtgggc aatacagcaa ttatcgccgg ttttggactg
      781 atggacgatg agtatctgga ctattcgcag gatctgctgt acgccaaggt ggaggttatt
      841 aataaccaag aatgcctgcc catctacggc tccattgtcg tgctggactc cactttgtgt
      901 gcccgcggtc atggcggcag caacatgtcc atttgcagcg gcgactccgg cggcccgttg
      961 atcgaataca atgccaccaa tggccagtgg cagcagatcg gcatcaattc gtttgtagcc
     1021 gaggatcaat gcaccgccag ctatccatcg ggctatgtgc ggctcacctc tttcttgagc
     1081 ttcattgccc agaatacaga ggatgttgtg gtgtagaatg tgatgaaatg gttgaaataa
     1141 ataatgaata tgaagcaa