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LOCUS XM_017140652 4089 bp mRNA linear INV 09-DEC-2024 FAK (Graf), transcript variant X2, mRNA. ACCESSION XM_017140652 VERSION XM_017140652.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140652.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4089 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4089 /gene="Graf" /note="GTPase regulator associated with FAK; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056722" CDS 539..3598 /gene="Graf" /codon_start=1 /product="rho GTPase-activating protein Graf isoform X1" /protein_id="XP_016996141.2" /db_xref="GeneID:108056722" /translation="MGGGKNIRRGLEPLEFEECIVDSPDFRENLNRHEKELDHTSHQI KRIIKEVKDLMSAAKMLSTRMKQLAILLTDFNFECIGTAQTDDENVICESLKRFGAII GNIEDEREKMLTLADKHIIESLEDFRKKQIGGVKENKKKFDKKTEKFCQSQERFLNMS TKKPENTIQEADASLGMHEREYIQESLSYVLRIQEVQERIKFEFVEILLAFISGWLVF YHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTELKTKYMEKRTKPEEIFTKRG YLFLMEKSSILKISLLEPFKATWTKYYCTFKKQKREFTMLQFNQMNHNFTRPEARDDE KLTLFSCQRRASEFEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWISAMDGTEPTYLA PGKIKVSEAYHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLSLGLNQK ETDDVFVDDKYRDLMESNTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVN EVHKLVYKLPQPNFQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLRPREESVA AILDIKFNNIVINILIDNYERIFKNKPSADVKLPVEAAKAPSIMYPARSSPPTRMPRA SQIGKAASTGAMGSTSSTAAAAAAAGNPMFLNQQKIYRVVSKSNCTEPTMSSSLQNIP NGDNYASGGAGCISLSPPMHMLNGILSPTIGSINNLHTISKNETTVGTTTAAGTRRYV PNDTAEVATDYGIIGANNGGVTLQSHHAIPVSSTTNFRHPEYLVTQSGSTNHLYTNSS SSVAGAAATSGNRISLNNVSPPNTAMRKERFLGSTGSGPQQHPPVQRGLHSYGQTKQQ QQQHYSPLMPTSTSSSNDSVCDSLSSNNGQHLGARNSNDYAMLTSQNSSLSPHLGHGS ACDEVVTATTVSCGGSANESSEYPPSKMHRNRDINQIKRDLSTGTARVRTLYACMGES EGELSFEPNQIITNVRYSHEPGWLQGTLNGKTGLIPENYVEHLKPHH" misc_feature 617..1237 /gene="Graf" /note="The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins; Region: BAR_RhoGAP_OPHN1-like; cd07602" /db_xref="CDD:153286" misc_feature order(644..646,653..658,668..670,674..679,686..691, 695..700,707..712,716..721,728..733,737..742,749..751, 830..832,839..844,1118..1120,1127..1132,1136..1138, 1151..1153,1160..1165,1169..1174,1184..1189,1196..1201, 1205..1210,1214..1219,1223..1228) /gene="Graf" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153286" misc_feature 1355..1708 /gene="Graf" /note="GTPase Regulator Associated with Focal adhesion and related proteins Pleckstrin homology (PH) domain; Region: BAR-PH_GRAF_family; cd01249" /db_xref="CDD:269953" misc_feature 1685..2290 /gene="Graf" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(1829..1831,1961..1963,1973..1975,2180..2182, 2189..2194,2261..2263) /gene="Graf" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 1829..1831 /gene="Graf" /note="catalytic residue [active]" /db_xref="CDD:238090" misc_feature 3419..3580 /gene="Graf" /note="Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins; Region: SH3_GRAF-like; cd11882" /db_xref="CDD:212815" misc_feature order(3434..3436,3440..3442,3449..3451,3461..3463, 3518..3523,3560..3562,3566..3571) /gene="Graf" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212815" polyA_site 4089 /gene="Graf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtgcgcgt ttgcgtttgc ggtacgcgaa aaagcgaaaa actaccgacg ggacggtctc 61 gtaactaaga gcatttattt ttgttttgcc caagtgaatt cggatttgga atcgcaatcg 121 gaatcggaat aggaattcgg aattccgatg ggctaaagtc attttccccc cgtgcagagt 181 gtttttgcga ggatgtcgac ccgatgaacg gtgcatttga ggatttgatt tgatttattt 241 atttgtgatt ttgtgattcc actgcatatg tatatatata tgcacatgca tatgtgcgtg 301 tgctggaata tttcaatatg catcgtccac ctactgaaaa acagtattta cattgaaacg 361 taaatattta aaaggagcca gagccactct tcctgtaaat gtttcaaaca ccacagcttc 421 aacgcctgaa tacaaatata caccatacat tagccaccgc ggaagaacgc agcctgaaat 481 aacctaaagc agctgggccc gaaaatcttc aatatttttg aaaccaaaag caaacacaat 541 gggcggcggc aaaaatatac gccgcggctt ggagccactg gagttcgagg aatgcatcgt 601 cgacagtccg gactttcgcg aaaatctaaa ccgacatgaa aaggagctgg accacactag 661 tcatcaaata aaacgaataa tcaaagaggt caaggatcta atgagtgcgg caaagatgct 721 gtccactaga atgaaacaat tggccatttt acttaccgac tttaactttg agtgcatagg 781 cactgctcag accgacgacg agaatgtcat ttgcgaaagc ctaaaacgct ttggtgctat 841 cattggcaat atcgaagatg agcgcgagaa aatgctaacg ctcgctgaca aacatattat 901 tgagtcgctg gaggattttc gaaaaaagca aattggcggc gtcaaagaaa acaaaaagaa 961 attcgataag aaaacggaga aattctgtca gtcgcaggag cgttttctca atatgtcaac 1021 taaaaagccc gagaacacaa tacaggaggc tgatgctagc ttgggcatgc acgaacgcga 1081 gtatatccag gagtcgctga gctatgtcct gcggatacag gaagtgcagg aacgaatcaa 1141 attcgagttc gtcgagatac tgctcgcatt tatttctggc tggttggtgt tctatcacac 1201 agcccacgaa caggcggaag atcatcgcga ctacctgcag gatttgaggc acaaggtgca 1261 gaagactcgc gaaaatttcg aagaggctcg cgaaaaggtt actgagttga aaacaaagta 1321 catggaaaaa cgcacaaagc ccgaggagat tttcacaaag cggggctacc tatttttaat 1381 ggaaaaaagt tccattctga aaatctccct tttagagcca ttcaaagcga cgtggacgaa 1441 atactattgt acattcaaga agcaaaagcg cgagttcacg atgctgcagt tcaatcaaat 1501 gaatcacaat ttcaccaggc cggaggcacg cgatgacgag aagctgacgc tcttctcgtg 1561 ccagcgaaga gcctcggagt tcgagaagcg cttctgcttc gatttgacct tcaaggagaa 1621 gccgggcgtc gtctatacct ttcaggcgct aagcgaaaag gatcatcgct actggattag 1681 cgctatggat ggcacggagc cgacttatct ggcgcctggt aaaatcaaag tcagcgaggc 1741 ataccatctg gatgaggccg gcttcatgtt catccgccgc tgcattcaag tattagagat 1801 ccgtggtctg gaggacgagg ggatttaccg gaagagcggt gtgggtacca aaatcagcaa 1861 gctgctctcg ctgggcctga atcaaaagga aaccgacgac gtcttcgtgg acgacaagta 1921 ccgggattta atggagagca acaccattgc cagtgccctg aaaatgtatc tgcgaaatct 1981 aaatgagccc ttgatgacct atcaatacca cagtgatttt attgaggcag ccaagcaaga 2041 aaccctgaat caacgcgtga acgaggtgca caagctggtc tacaaattgc cacagcctaa 2101 ttttcagatg ctggacatgg ttatttgcca tttgacagac gtttcacgaa agtacgagaa 2161 gaacaagatg tccgtattca atctgggcgt ggttttcgga cccactttgc tgcgacctcg 2221 cgaggaatcg gtggccgcca tactggatat taaattcaac aatatcgtca ttaacattct 2281 gattgataac tacgagcgga tcttcaagaa caagcccagc gccgatgtaa agctgcctgt 2341 ggaggccgcc aaggcgccga gcattatgta tcccgcacgc agcagtccac ccacgcgaat 2401 gccgcgtgcc tctcaaatag gaaaggccgc ttcgactggt gccatgggca gtacgagcag 2461 cactgcggcg gcggcggcag cggcggggaa tccgatgttc ctcaatcagc agaagatcta 2521 ccgcgtggtc agcaaatcca attgtacaga gcccaccatg tcgtccagcc tgcagaatat 2581 tccgaatggc gataactatg cttcgggcgg tgccggctgc atttccctgt cgccgcccat 2641 gcatatgctg aatggcatac tctcgccgac catcggcagc atcaacaatc tgcacacaat 2701 atcgaagaac gagacgacgg taggaacgac aacggcggcg ggcacacggc gatacgttcc 2761 caacgacacg gctgaggtcg cgaccgatta tggtattata ggtgccaaca atggcggcgt 2821 gacgctgcag tcgcatcatg ccatacccgt cagcagcacg accaatttcc ggcatcccga 2881 gtacctagtg acccagtcgg ggtcgactaa tcacctatat acgaacagta gctctagtgt 2941 cgctggtgcc gccgctacct caggcaatcg gattagtctg aacaacgttt ccccgccaaa 3001 tacagcgatg cgaaaggaga gatttctcgg tagcaccggc agcgggccgc agcagcatcc 3061 gcccgtccaa cggggcctcc actcgtacgg ccaaacgaag cagcagcagc agcagcacta 3121 ctcacccctg atgcccacgt caacgtcgag ctccaacgac agcgtatgtg attcactttc 3181 ttccaataac ggccagcatt tgggcgcacg caactctaat gattatgcca tgctaacgtc 3241 acagaactca tcgctgtcgc cgcatcttgg acacggatcc gcctgcgatg aggtcgtcac 3301 ggccaccacc gtcagctgcg gcggctccgc caacgagagt tccgagtatc cgcccagcaa 3361 aatgcatcgt aatcgtgaca ttaaccaaat aaaacgtgat ttgtcaacgg gcacagctcg 3421 agtgcgcaca ctctatgctt gcatgggcga gagcgagggg gagctttcgt ttgagcccaa 3481 tcaaataata accaatgttc ggtattccca cgagcccggc tggttgcagg gcacactaaa 3541 tggaaaaaca ggactcattc cggagaacta tgtggaacac ttgaagcccc accattagat 3601 tacgctttgg ttcggcttgg gagttcgaat gttccctcgt attttttgca ttcgtcgtta 3661 gataaaatta aaaaaaaaac aaaaacaaaa caaaaaaatg aaatattagg aaatcgaaaa 3721 atgatcgttg tgtaaaaaaa actaaaacta atttttgagt atgtgccctt ggggttgttt 3781 tacatgaaat gcattttatt ttatgctgga aaccaggaaa ccacaatctt accttataac 3841 tatgttaacc tttataatac catgaccata caatgtactt atttttaatt atttaataag 3901 gagtataaac tcagtgcaac tgcaaagatt tatttactaa ttgttacgct cttcatttgt 3961 tgcttattta tacataattc acgtaatttg tgcaaaaatg aattacatcg tatctaatat 4021 ctactacata tacaattgta taaaaataaa tagcagtgct tcgaacactt ttaaaatgta 4081 aactttaaa